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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013167 ID=TCONS_00013167|Name=TCONS_00013167|organism=Clytia hemisphaerica|type=transcript|length=1968bp
TGTAAAGTGAAATGTGAAATTTGATATTAGAAAAAGAAAACCTAAAATTG
TTAGCTAAGCAGCTtgctttttttaatgaaatatgGATCACTTACAATGG
CTGAAGAAGTATTGCAGGCTGTgcaaaacaaagataaaatTTGACAAAGC
ATACACACAGGCAAAAGAATGTAGAGGTTTTCAAGAGagCATCGTTTCAG
TGTATGGAATCACATGCcacaatgaagatgaaaatgtttaCCCTAAATTG
CTTTGTAAAAACTGTTGCAGAAACGTTGTAAGAGATGCTAATAATGGGAA
GAAGAAAGAACCTGCTATTTTCTCTACACACAATGAACACTGTGAAATTT
GTGCTGTTGAAAATAAGCTGTCTGCTCCAAAGAACACAACTCTCAATAAA
CATAATCTTGATAAACTTTTCCAATCAAATGGCTTTTTTGTTTGCTCTAA
GTCCCCATCTCGTACATACAGTAAACTCAATGTTACAAATGGAAAAGTGA
TACCAGTTATAACAATTAATATAAACGAGGATTGTACATGGAGTGTTGTA
GTCCTTGGCAAAAGTCTACCATGTGATGAAATATTTCCAGCATATCAGTT
TCTGAATGACAATAATGCAGTAAGTCTCATCAGTGATTTGACAGAATGCA
AAATTTGTTTTGGAAATAATAAGTATCCTGATGTTGTGCAGAGTCGTATT
GTTGTTGATCAACCATTCCCATCAAACTCTGGTGGCATATCAGCAATAGT
TGAATCCGATGAGTGTTGCATTGAGTTCCGAAAACACAATTTTAATTCTG
TTAGACATCCAAACTGTTCACTCTTATACAATTCCGAAAAGGAGATGTGT
GATAATTGTTGTTCATTagacaaaacttttaaagtttttcaaaagcgAAT
TCAAGAGCCAATCGATTTTGAGAGAAGGACTTGTGACATTTCAACAACTA
ATTTACGGCATTTGTCCAAAGATGAGTTAATTGCTAGACTTCAGAACACA
CAAATTGCCAAACGAGAGGCTATTCGAAAAATAGTCAATTTGCAGTCGAA
AATCAACCAGATGATTGAAGATGAAAGCGTTGAATTAAATGAAACAAATC
ATGAAATCGTCAAAGTAGTGCTGGATAAAGAAAAGCCAGAGTTTCCAGAA
GGGACTCCTCAATGGCTTCTGTGGCAGGAGCAGCAGAAGATGTCCAAGTT
GAAAAACAGTCGTTCGATGCGTTGGCACCCTTTGATTGTACGGTGGTGCT
TGAGCATTTACCACAAATCACCTGCAGCATACAAGCAGATTGCTAACtca
aagaacaattttttgaaattaccaCACGTTAATACCATAAAACGCTATAC
AAATTTTACAAAGCCAACATCTGGATTCAATCCAGATATTATCAAGCGTT
TGGTAATAGATTCTAATCTGGAAAAACTTGATGACTTAAAGAGAAATGTT
GTCATTCTATTCGACGAGATGAAAATCAAGGCTGACTTAATTTACAGTCG
TTCAACAGGAAAATTGGTAGGATTTACTGACATGGGTAATGTGAATGAGG
AGATCAGGAAACTGCAAGATAAGTGTAACGAAAAAGAACCCCACCAAAGA
GAACTCACTCGATATGTAAATGTTTATATGGCTAGAGGAATCTTTACAAA
GCTTAAATATCCCTTTGGATTTTTTGGCTCACAAGGATTTACAAGTGATC
AGTTATACCCATGTACTCTGGAAGTGACTCGAGTTCTCGAAAGTATTGGT
TTTAAAGTACGTGCCTGGATCTGTGATGGAGCATCACCAAACAGAAAATT
CTTTACAATCAGCCAAAGCTTTTCAAAAGATGGTGataccttctattgga
cagaaaatccttttgaCCAGACAAGGAAACTTTACTTCTCTAGTGACTAT
CCACATCTTCTAAAAACAACAAGGAACTGCCTGGAGAATTCCCATGGCAA
CAGCAATACTAGAAATCT Run BLAST on NCBI protein sequence of TCONS_00013167-protein >TCONS_00013167-protein ID=TCONS_00013167-protein|Name=TCONS_00013167-protein|organism=Clytia hemisphaerica|type=polypeptide|length=628bp
MDHLQWLKKYCRLCKTKIKFDKAYTQAKECRGFQESIVSVYGITCHNEDE
NVYPKLLCKNCCRNVVRDANNGKKKEPAIFSTHNEHCEICAVENKLSAPK
NTTLNKHNLDKLFQSNGFFVCSKSPSRTYSKLNVTNGKVIPVITININED
CTWSVVVLGKSLPCDEIFPAYQFLNDNNAVSLISDLTECKICFGNNKYPD
VVQSRIVVDQPFPSNSGGISAIVESDECCIEFRKHNFNSVRHPNCSLLYN
SEKEMCDNCCSLDKTFKVFQKRIQEPIDFERRTCDISTTNLRHLSKDELI
ARLQNTQIAKREAIRKIVNLQSKINQMIEDESVELNETNHEIVKVVLDKE
KPEFPEGTPQWLLWQEQQKMSKLKNSRSMRWHPLIVRWCLSIYHKSPAAY
KQIANSKNNFLKLPHVNTIKRYTNFTKPTSGFNPDIIKRLVIDSNLEKLD
DLKRNVVILFDEMKIKADLIYSRSTGKLVGFTDMGNVNEEIRKLQDKCNE
KEPHQRELTRYVNVYMARGIFTKLKYPFGFFGSQGFTSDQLYPCTLEVTR
VLESIGFKVRAWICDGASPNRKFFTISQSFSKDGDTFYWTENPFDQTRKL
YFSSDYPHLLKTTRNCLENSHGNSNTRN Run BLAST on NCBI transcript from alignment at sc0000162:394260..396533- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013167 ID=TCONS_00013167|Name=TCONS_00013167|organism=Clytia hemisphaerica|type=transcript|length=2274bp|location=Sequence derived from alignment at sc0000162:394260..396533- (Clytia hemisphaerica)
TGTAAAGTGAAATGTGAAATTTGATATTAGAAAAAGAAAACCTAAAATTG
TTAGCTAAGCAGCTTGCTTTTTTTAATGAAATATGGATCACTTACAATGG
CTGAAGAAGTATTGCAGGCTGTGCAAAACAAAGATAAAATTTGACAAAGC
ATACACACAGGCAAAAGAATGTAGAGGTTTTCAAGAGGTAAGATCTGAAC
TTATTATATTCCAGACCTTTTCCCACTCAATACAATTTATAATTTTTTTA
AATCAATTTATCGATGATTTAACTTAATGATTGATTGATTATCAAATTGA
TATAGTCTATGATTGATTAAAAGTTTGTATATATAGCAACAGAAACTTAA
CTTGCTACTTGACTTGATTGCAATTAGGAAAGAAATTATGAAAATATGAT
TCGTTATTAATTCAGTTTGTTTCTGTATTTTTTAGCATTATTGTGAAAAA
AGTATAAACAGCTTCTTTATGAATTATTTTTTTTCCATTTTAGAGCATCG
TTTCAGTGTATGGAATCACATGCCACAATGAAGATGAAAATGTTTACCCT
AAATTGCTTTGTAAAAACTGTTGCAGAAACGTTGTAAGAGATGCTAATAA
TGGGAAGAAGAAAGAACCTGCTATTTTCTCTACACACAATGAACACTGTG
AAATTTGTGCTGTTGAAAATAAGCTGTCTGCTCCAAAGAACACAACTCTC
AATAAACATAATCTTGATAAACTTTTCCAATCAAATGGCTTTTTTGTTTG
CTCTAAGTCCCCATCTCGTACATACAGTAAACTCAATGTTACAAATGGAA
AAGTGATACCAGTTATAACAATTAATATAAACGAGGATTGTACATGGAGT
GTTGTAGTCCTTGGCAAAAGTCTACCATGTGATGAAATATTTCCAGCATA
TCAGTTTCTGAATGACAATAATGCAGTAAGTCTCATCAGTGATTTGACAG
AATGCAAAATTTGTTTTGGAAATAATAAGTATCCTGATGTTGTGCAGAGT
CGTATTGTTGTTGATCAACCATTCCCATCAAACTCTGGTGGCATATCAGC
AATAGTTGAATCCGATGAGTGTTGCATTGAGTTCCGAAAACACAATTTTA
ATTCTGTTAGACATCCAAACTGTTCACTCTTATACAATTCCGAAAAGGAG
ATGTGTGATAATTGTTGTTCATTAGACAAAACTTTTAAAGTTTTTCAAAA
GCGAATTCAAGAGCCAATCGATTTTGAGAGAAGGACTTGTGACATTTCAA
CAACTAATTTACGGCATTTGTCCAAAGATGAGTTAATTGCTAGACTTCAG
AACACACAAATTGCCAAACGAGAGGCTATTCGAAAAATAGTCAATTTGCA
GTCGAAAATCAACCAGATGATTGAAGATGAAAGCGTTGAATTAAATGAAA
CAAATCATGAAATCGTCAAAGTAGTGCTGGATAAAGAAAAGCCAGAGTTT
CCAGAAGGGACTCCTCAATGGCTTCTGTGGCAGGAGCAGCAGAAGATGTC
CAAGTTGAAAAACAGTCGTTCGATGCGTTGGCACCCTTTGATTGTACGGT
GGTGCTTGAGCATTTACCACAAATCACCTGCAGCATACAAGCAGATTGCT
AACTCAAAGAACAATTTTTTGAAATTACCACACGTTAATACCATAAAACG
CTATACAAATTTTACAAAGCCAACATCTGGATTCAATCCAGATATTATCA
AGCGTTTGGTAATAGATTCTAATCTGGAAAAACTTGATGACTTAAAGAGA
AATGTTGTCATTCTATTCGACGAGATGAAAATCAAGGCTGACTTAATTTA
CAGTCGTTCAACAGGAAAATTGGTAGGATTTACTGACATGGGTAATGTGA
ATGAGGAGATCAGGAAACTGCAAGATAAGTGTAACGAAAAAGAACCCCAC
CAAAGAGAACTCACTCGATATGTAAATGTTTATATGGCTAGAGGAATCTT
TACAAAGCTTAAATATCCCTTTGGATTTTTTGGCTCACAAGGATTTACAA
GTGATCAGTTATACCCATGTACTCTGGAAGTGACTCGAGTTCTCGAAAGT
ATTGGTTTTAAAGTACGTGCCTGGATCTGTGATGGAGCATCACCAAACAG
AAAATTCTTTACAATCAGCCAAAGCTTTTCAAAAGATGGTGATACCTTCT
ATTGGACAGAAAATCCTTTTGACCAGACAAGGAAACTTTACTTCTCTAGT
GACTATCCACATCTTCTAAAAACAACAAGGAACTGCCTGGAGAATTCCCA
TGGCAACAGCAATACTAGAAATCT Coding sequence (CDS) from alignment at sc0000162:394260..396533- >TCONS_00013167 ID=TCONS_00013167|Name=TCONS_00013167|organism=Clytia hemisphaerica|type=CDS|length=3768bp|location=Sequence derived from alignment at sc0000162:394260..396533- (Clytia hemisphaerica)
AGCATCGTTTCAGTGTATGGAATCACATGCCACAATGAAGATGAAAATGT
TTACCCTAAATTGCTTTGTAAAAACTGTTGCAGAAACGTTGTAAGAGATG
CTAATAATGGGAAGAAGAAAGAACCTGCTATTTTCTCTACACACAATGAA
CACTGTGAAATTTGTGCTGTTGAAAATAAGCTGTCTGCTCCAAAGAACAC
AACTCTCAATAAACATAATCTTGATAAACTTTTCCAATCAAATGGCTTTT
TTGTTTGCTCTAAGTCCCCATCTCGTACATACAGTAAACTCAATGTTACA
AATGGAAAAGTGATACCAGTTATAACAATTAATATAAACGAGGATTGTAC
ATGGAGTGTTGTAGTCCTTGGCAAAAGTCTACCATGTGATGAAATATTTC
CAGCATATCAGTTTCTGAATGACAATAATGCAGTAAGTCTCATCAGTGAT
TTGACAGAATGCAAAATTTGTTTTGGAAATAATAAGTATCCTGATGTTGT
GCAGAGTCGTATTGTTGTTGATCAACCATTCCCATCAAACTCTGGTGGCA
TATCAGCAATAGTTGAATCCGATGAGTGTTGCATTGAGTTCCGAAAACAC
AATTTTAATTCTGTTAGACATCCAAACTGTTCACTCTTATACAATTCCGA
AAAGGAGATGTGTGATAATTGTTGTTCATTAGACAAAACTTTTAAAGTTT
TTCAAAAGCGAATTCAAGAGCCAATCGATTTTGAGAGAAGGACTTGTGAC
ATTTCAACAACTAATTTACGGCATTTGTCCAAAGATGAGTTAATTGCTAG
ACTTCAGAACACACAAATTGCCAAACGAGAGGCTATTCGAAAAATAGTCA
ATTTGCAGTCGAAAATCAACCAGATGATTGAAGATGAAAGCGTTGAATTA
AATGAAACAAATCATGAAATCGTCAAAGTAGTGCTGGATAAAGAAAAGCC
AGAGTTTCCAGAAGGGACTCCTCAATGGCTTCTGTGGCAGGAGCAGCAGA
AGATGTCCAAGTTGAAAAACAGTCGTTCGATGCGTTGGCACCCTTTGATT
GTACGGTGGTGCTTGAGCATTTACCACAAATCACCTGCAGCATACAAGCA
GATTGCTAACTCAAAGAACAATTTTTTGAAATTACCACACGTTAATACCA
TAAAACGCTATACAAATTTTACAAAGCCAACATCTGGATTCAATCCAGAT
ATTATCAAGCGTTTGGTAATAGATTCTAATCTGGAAAAACTTGATGACTT
AAAGAGAAATGTTGTCATTCTATTCGACGAGATGAAAATCAAGGCTGACT
TAATTTACAGTCGTTCAACAGGAAAATTGGTAGGATTTACTGACATGGGT
AATGTGAATGAGGAGATCAGGAAACTGCAAGATAAGTGTAACGAAAAAGA
ACCCCACCAAAGAGAACTCACTCGATATGTAAATGTTTATATGGCTAGAG
GAATCTTTACAAAGCTTAAATATCCCTTTGGATTTTTTGGCTCACAAGGA
TTTACAAGTGATCAGTTATACCCATGTACTCTGGAAGTGACTCGAGTTCT
CGAAAGTATTGGTTTTAAAGTACGTGCCTGGATCTGTGATGGAGCATCAC
CAAACAGAAAATTCTTTACAATCAGCCAAAGCTTTTCAAAAGATGGTGAT
ACCTTCTATTGGACAGAAAATCCTTTTGACCAGACAAGGAAACTTTACTT
CTCTAGTGACTATCCACATCTTCTAAAAACAACAAGGAACTGCCTGGAGA
ATTCCCATGGCAACAGCAATACTAGAAATATGGATCACTTACAATGGCTG
AAGAAGTATTGCAGGCTGTGCAAAACAAAGATAAAATTTGACAAAGCATA
CACACAGGCAAAAGAATGTAGAGGTTTTCAAGAGAGCATCGTTTCAGTGT
ATGGAATCACATGCCACAATGAAGATGAAAATGTTTACCCTAAATTGCTT
TGTAAAAACTGTTGCAGAAACGTTGTAAGAGATGCTAATAATGGGAAGAA
GAAAGAACCTGCTATTTTCTCTACACACAATGAACACTGTGAAATTTGTG
CTGTTGAAAATAAGCTGTCTGCTCCAAAGAACACAACTCTCAATAAACAT
AATCTTGATAAACTTTTCCAATCAAATGGCTTTTTTGTTTGCTCTAAGTC
CCCATCTCGTACATACAGTAAACTCAATGTTACAAATGGAAAAGTGATAC
CAGTTATAACAATTAATATAAACGAGGATTGTACATGGAGTGTTGTAGTC
CTTGGCAAAAGTCTACCATGTGATGAAATATTTCCAGCATATCAGTTTCT
GAATGACAATAATGCAGTAAGTCTCATCAGTGATTTGACAGAATGCAAAA
TTTGTTTTGGAAATAATAAGTATCCTGATGTTGTGCAGAGTCGTATTGTT
GTTGATCAACCATTCCCATCAAACTCTGGTGGCATATCAGCAATAGTTGA
ATCCGATGAGTGTTGCATTGAGTTCCGAAAACACAATTTTAATTCTGTTA
GACATCCAAACTGTTCACTCTTATACAATTCCGAAAAGGAGATGTGTGAT
AATTGTTGTTCATTAGACAAAACTTTTAAAGTTTTTCAAAAGCGAATTCA
AGAGCCAATCGATTTTGAGAGAAGGACTTGTGACATTTCAACAACTAATT
TACGGCATTTGTCCAAAGATGAGTTAATTGCTAGACTTCAGAACACACAA
ATTGCCAAACGAGAGGCTATTCGAAAAATAGTCAATTTGCAGTCGAAAAT
CAACCAGATGATTGAAGATGAAAGCGTTGAATTAAATGAAACAAATCATG
AAATCGTCAAAGTAGTGCTGGATAAAGAAAAGCCAGAGTTTCCAGAAGGG
ACTCCTCAATGGCTTCTGTGGCAGGAGCAGCAGAAGATGTCCAAGTTGAA
AAACAGTCGTTCGATGCGTTGGCACCCTTTGATTGTACGGTGGTGCTTGA
GCATTTACCACAAATCACCTGCAGCATACAAGCAGATTGCTAACTCAAAG
AACAATTTTTTGAAATTACCACACGTTAATACCATAAAACGCTATACAAA
TTTTACAAAGCCAACATCTGGATTCAATCCAGATATTATCAAGCGTTTGG
TAATAGATTCTAATCTGGAAAAACTTGATGACTTAAAGAGAAATGTTGTC
ATTCTATTCGACGAGATGAAAATCAAGGCTGACTTAATTTACAGTCGTTC
AACAGGAAAATTGGTAGGATTTACTGACATGGGTAATGTGAATGAGGAGA
TCAGGAAACTGCAAGATAAGTGTAACGAAAAAGAACCCCACCAAAGAGAA
CTCACTCGATATGTAAATGTTTATATGGCTAGAGGAATCTTTACAAAGCT
TAAATATCCCTTTGGATTTTTTGGCTCACAAGGATTTACAAGTGATCAGT
TATACCCATGTACTCTGGAAGTGACTCGAGTTCTCGAAAGTATTGGTTTT
AAAGTACGTGCCTGGATCTGTGATGGAGCATCACCAAACAGAAAATTCTT
TACAATCAGCCAAAGCTTTTCAAAAGATGGTGATACCTTCTATTGGACAG
AAAATCCTTTTGACCAGACAAGGAAACTTTACTTCTCTAGTGACTATCCA
CATCTTCTAAAAACAACAAGGAACTGCCTGGAGAATTCCCATGGCAACAG
CAATACTAGAAATATGGATCACTTACAATGGCTGAAGAAGTATTGCAGGC
TGTGCAAAACAAAGATAAAATTTGACAAAGCATACACACAGGCAAAAGAA
TGTAGAGGTTTTCAAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013167-exon-sc0000162-1575043694:396347..396533 | TCONS_00013167-exon-sc0000162-1575043694:396347..396533 | Clytia hemisphaerica | exon |
| TCONS_00013167-exon-sc0000162-1575043694:394260..396040 | TCONS_00013167-exon-sc0000162-1575043694:394260..396040 | Clytia hemisphaerica | exon |
| TCONS_00013167-exon-sc0000162-1510915933:396347..396533 | TCONS_00013167-exon-sc0000162-1510915933:396347..396533 | Clytia hemisphaerica | exon |
| TCONS_00013167-exon-sc0000162-1510915933:394260..396040 | TCONS_00013167-exon-sc0000162-1510915933:394260..396040 | Clytia hemisphaerica | exon |
| TCONS_00013167-exon-sc0000162-1491911889:396347..396533 | TCONS_00013167-exon-sc0000162-1491911889:396347..396533 | Clytia hemisphaerica | exon |
| TCONS_00013167-exon-sc0000162-1491911889:394260..396040 | TCONS_00013167-exon-sc0000162-1491911889:394260..396040 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000162 | supercontig | sc0000162:394260..396533 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR021896 | Transposase_37 |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004803 | transposase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006313 | transposition, DNA-mediated |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006313 |
transposition, DNA-mediated |
| molecular_function |
GO:0004803 |
transposase activity |
Blast
The following BLAST results are available for this feature:
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