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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013164 ID=TCONS_00013164|Name=TCONS_00013164|organism=Clytia hemisphaerica|type=transcript|length=1564bp
NNGAGGAATTAAGTTcaagtaacgaagaaatcagagaagaaagttacgga
ggaataaagttcgaagtaacgaagaaatcagagaagaaagttacggagga
attaagttcgaagtaacgaagaaatcagagaaGAAAGTTACGGAGGAATT
AAGTTcaaGTAACGaagaaattagagaagaaaattacggaggaataaagt
tcgaagtaacgaagaaattagagaagaaaATTACGGAGGAATAAAGTTCA
AGTAAAGaagaaattagagaagaaaATTACTACTAAGGAACTAGTAATAA
AGTAGATAGTCCATGAATAACCAAACATCATAATTAGTTAGTTTTAACCA
ATAACCGATCGCTATTTCGATCACTGACTGATCTCTGTCggttatttctt
tcttttggaATTGATTGTCTAAAGCAGTGTTTTTAGGATACCCTTTGAAG
TCGGAAGTTTGCTGATGTCACCGTGCGGGGAGGGCACGTAGATATTAGTG
GAAAATTTTGAGCCATTCAAAGAATTCAAAAGCATCCCAACTTCCATTGA
GCCAATATTTCAGCATTTCTAATTAAATTTTAAGTAGATTTCATATTTGA
AAAATCATccgtttttaatttgttcaCGCTCATTGAGccaaagtaatttt
tcaaaattgcgCTGGGAATTGAGTCATGTATATTTCTATTATTATAAatc
acaaaatcacaaaatcactGCCATTCTGATTTGAGCTTTCAAACAGATGA
TAACAAGAGAAAAACAGGAAGAATGAGAACACAGACAGCCTTGTTACTGA
TCGCTGTTATCACGCTTGCAGTTTTTGCAGGGAAAAGCGAGCACGAGAAC
GGAGACCAACCAGAGCGACCTCTTTCAGACGAGAAATATCAGCGCGTGTA
TAATGGTATTGCTGAGCAAATTTTCGATGAAATGACAAATGGAGAAGTCA
ATGAAGATTTAAGTGAAGaatatttgaataattttgaGATAGAAGGACTT
AAGAATGATGGTAGTGCCAGTAGCCGACGAAGACGAAGACGACGAAGACG
AAGGAGACGACTTTAATTCAACAATTTACGATATTTGTAGTTTAAAATAC
TTTAGTTTGTGACTTTCTTTTTTCTGTAATCTCTACACCAAtataatttt
ctacttttttcaccATAAACTTGATTTTAACCGGAAGAGAAAAATTTATt
gctgaaaagaaaaaatacacCTGAAAACACCATTAATTAATTTCACTTTT
CTCTCCTAGCATCAACACCTTCTATGGTTTTCGATTTCTGAACTTTTGAT
TATCTAGTACTTTTAATTAAGGttattcttttaattatttatttcataca
aacttaaaattttttacTTCGCTCTGACTTCTTCCTTGGTTTGTGGAAAT
GAACTTTCtggataaaaaaattaatttattttttattcttttaatttcta
ttAATTTGTTTTTATCCTTTAATTTGTAGACAGAAGAACCCTATTTTATT
TTAGGGATCTTGTAGgatgaaaaagaataaaaaaataattaatccTCTAA
ACTGTCAATATTGT Run BLAST on NCBI transcript from alignment at sc0000162:306657..308741- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013164 ID=TCONS_00013164|Name=TCONS_00013164|organism=Clytia hemisphaerica|type=transcript|length=2085bp|location=Sequence derived from alignment at sc0000162:306657..308741- (Clytia hemisphaerica)
NNGAGGAATTAAGTTCAAGTAACGAAGAAATCAGAGAAGAAAGTTACGGA
GGAATAAAGTTCGAAGTAACGAAGAAATCAGAGAAGAAAGTTACGGAGGA
ATTAAGTTCGAAGTAACGAAGAAATCAGAGAAGAAAGTTACGGAGGAATT
AAGTTCAAGTAACGAAGAAATTAGAGAAGAAAATTACGGAGGAATAAAGT
TCGAAGTAACGAAGAAATTAGAGAAGAAAATTACGGAGGAATAAAGTTCA
AGTAAAGAAGAAATTAGAGAAGAAAATTACTACTAAGGAACTAGTAATAA
AGTAGATAGTCCATGAATAACCAAACATCATAATTAGTTAGTTTTAACCA
ATAACCGATCGCTATTTCGATCACTGACTGATCTCTGTCGGTTATTTCTT
TCTTTTGGAATTGATTGTCTAAAGCAGTGTTTTTAGGATACCCTTTGAAG
TCGGAAGTTTGCTGATGTCACCGTGCGGGGAGGGCACGTAGATATTAGTG
GAAAATTTTGAGCCATTCAAAGAATTCAAAAGCATCCCAACTTCCATTGA
GCCAATATTTCAGCATTTCTAATTAAATTTTAAGTAGATTTCATATTTGA
AAAATCATCCGTTTTTAATTTGTTCACGCTCATTGAGCCAAAGTAATTTT
TCAAAATTGCGCTGGGAATTGAGTCATGTATATTTCTATTATTATAAATC
ACAAAATCACAAAATCACTGCCATTCTGATTTGAGCTTTCAAACAGATGA
TAACAAGAGAAAAACAGGAAGAATGAGAACACAGACAGCCTTGTTACTGA
TCGCTGTTATCACGCTTGCAGTTTTTGGTGAGTGCTCTTTTTGAACATTA
TGTACACTACAGACTGATTCTTCTTCCTGATACTAAGCTGTCTTAAAAGT
AGAGCAATTATTTGGAGCTGAAAAAATTCGATTGTACGTAGATCTGACCA
AAGCCTAAAATATTTTAGCGTTTAGGTTTTGTAGAGATTAAACTCGAGTT
CCGATTTTTTTCAGCAGGGAAAAGCGAGCACGAGAACGGAGACCAACCAG
AGCGACCTCTTTCAGACGAGAAATATCAGCGCGTGTATAATGGTATTGCT
GAGCAAATTTTCGATGGTATGAATTTTGATATCTTTAATTTACTCAAGTG
AGAAGGCAGACATCAGCCCTAATAAAATACGCATTGGTTCAAAATGTTAT
CACGGCTGTTGCAATTAAAGTTCTTTAGTTTTTTAGACTGGAAAAGTTTT
ATCAAGGCATTGTTTTACTGAGATCCGAACAGAGCCGTGTTAACAAGCTT
TTACTGACAAAGCAGAATTTGTTTTCTTACTTTTAAATGGCTTAATAAGC
TAATTATGGAACATACAGGATAATATGTCGAATGGCGAATTCTTTTCGCG
GTTGAAACAAAAAATTTAAGGACTGAGTTTGGATCTGTATTTTCTTTTAG
AAATGACAAATGGAGAAGTCAATGAAGATTTAAGTGAAGAATATTTGAAT
AATTTTGAGATAGAAGGACTTAAGAATGATGGTAGTGCCAGTAGCCGACG
AAGACGAAGACGACGAAGACGAAGGAGACGACTTTAATTCAACAATTTAC
GATATTTGTAGTTTAAAATACTTTAGTTTGTGACTTTCTTTTTTCTGTAA
TCTCTACACCAATATAATTTTCTACTTTTTTCACCATAAACTTGATTTTA
ACCGGAAGAGAAAAATTTATTGCTGAAAAGAAAAAATACACCTGAAAACA
CCATTAATTAATTTCACTTTTCTCTCCTAGCATCAACACCTTCTATGGTT
TTCGATTTCTGAACTTTTGATTATCTAGTACTTTTAATTAAGGTTATTCT
TTTAATTATTTATTTCATACAAACTTAAAATTTTTTACTTCGCTCTGACT
TCTTCCTTGGTTTGTGGAAATGAACTTTCTGGATAAAAAAATTAATTTAT
TTTTTATTCTTTTAATTTCTATTAATTTGTTTTTATCCTTTAATTTGTAG
ACAGAAGAACCCTATTTTATTTTAGGGATCTTGTAGGATGAAAAAGAATA
AAAAAATAATTAATCCTCTAAACTGTCAATATTGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013164-exon-sc0000162-1575043694:307915..308741 | TCONS_00013164-exon-sc0000162-1575043694:307915..308741 | Clytia hemisphaerica | exon |
| TCONS_00013164-exon-sc0000162-1575043694:307626..307727 | TCONS_00013164-exon-sc0000162-1575043694:307626..307727 | Clytia hemisphaerica | exon |
| TCONS_00013164-exon-sc0000162-1575043694:306657..307291 | TCONS_00013164-exon-sc0000162-1575043694:306657..307291 | Clytia hemisphaerica | exon |
| TCONS_00013164-exon-sc0000162-1510915933:307915..308741 | TCONS_00013164-exon-sc0000162-1510915933:307915..308741 | Clytia hemisphaerica | exon |
| TCONS_00013164-exon-sc0000162-1510915933:307626..307727 | TCONS_00013164-exon-sc0000162-1510915933:307626..307727 | Clytia hemisphaerica | exon |
| TCONS_00013164-exon-sc0000162-1510915933:306657..307291 | TCONS_00013164-exon-sc0000162-1510915933:306657..307291 | Clytia hemisphaerica | exon |
| TCONS_00013164-exon-sc0000162-1491911889:307915..308741 | TCONS_00013164-exon-sc0000162-1491911889:307915..308741 | Clytia hemisphaerica | exon |
| TCONS_00013164-exon-sc0000162-1491911889:307626..307727 | TCONS_00013164-exon-sc0000162-1491911889:307626..307727 | Clytia hemisphaerica | exon |
| TCONS_00013164-exon-sc0000162-1491911889:306657..307291 | TCONS_00013164-exon-sc0000162-1491911889:306657..307291 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000162 | supercontig | sc0000162:306657..308741 - |
Blast
The following BLAST results are available for this feature:
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