TCONS_00013136 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013136
Unique NameTCONS_00013136
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length664

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013136 ID=TCONS_00013136|Name=TCONS_00013136|organism=Clytia hemisphaerica|type=transcript|length=664bp
tttctgaaaaaattatcCTTCGTTGACCCACCTTCGAGAATAGACGCTCG
AAGGATTATTCTTGTTATTTTGTGAGAATAGTATTGTTGGAATCTGTTTA
TATCGATATATTGCATATATAATTATGGCTGTTGAAGCACACGAGTGTTT
ACAACATGGTTTTGTTCTGGGACGGAGCCTGGGCGAAGGAGCATTCGGAA
TGGTTAAGCAAGCAGCGTATGCAAACTTTAACCACGTAAATGACTCTCTT
GCCAAAAGGCTCCGTCGCCTGGGGCACAATGATCAAgtGGCAATTAAAAT
TATGCCCAAAAGTCTTGGCATCGAAACTGTCAAGACGGAACTGAACTGCA
TGCTTGCCCTGACTGGAACAAAAAGCACTGTTCAGCTATTGAAATTCTTT
CAGGGCAGCATGCACGTATACTTCGTCCTTGAATTCTGTAGTGGTGgaga
tttggcaaattttgttCTTAACAAAAAACCCCAAAACAAAACCCAGATTT
TCAAGGACATTTTTCTTGGTGTGCAGCAATTCCACCAAGAAAACATTGCA
CATCGCGATTTGAAGTTATCCAATATTCTCATCGATCAAAATGGCGTCAT
CAAGATTGCTGATTTTGGTCTTGGATTTATCAAATCGACCCCAGAAGAAC
TCTGCGAGGATTAT
Run BLAST on NCBI

protein sequence of TCONS_00013136-protein

>TCONS_00013136-protein ID=TCONS_00013136-protein|Name=TCONS_00013136-protein|organism=Clytia hemisphaerica|type=polypeptide|length=180bp
MAVEAHECLQHGFVLGRSLGEGAFGMVKQAAYANFNHVNDSLAKRLRRLG
HNDQVAIKIMPKSLGIETVKTELNCMLALTGTKSTVQLLKFFQGSMHVYF
VLEFCSGGDLANFVLNKKPQNKTQIFKDIFLGVQQFHQENIAHRDLKLSN
ILIDQNGVIKIADFGLGFIKSTPEELCEDY
Run BLAST on NCBI

transcript from alignment at sc0000162:103004..104691-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013136 ID=TCONS_00013136|Name=TCONS_00013136|organism=Clytia hemisphaerica|type=transcript|length=1688bp|location=Sequence derived from alignment at sc0000162:103004..104691- (Clytia hemisphaerica)
TTTCTGAAAAAATTATCCTTCGTTGACCCACCTTCGAGAATAGACGCTCG
AAGGATTATTCTTGTTATTTTGTGAGAATAGTATTGTTGGAATCTGTTTA
TATCGATATATTGCATATATAATTATGGCTGTTGAAGCACACGAGTGTTT
ACAACATGGTTTTGTTCTGGGACGGAGCCTGGGCGAAGGAGCATTCGGAA
TGGTTAAGCAAGCAGCGTATGCAAACTTTAACCACGTAAATGACTCTCTT
GCCAAAAGGCTCCGTCGCCTGGGGCACAATGATCAAGTAAGCCTTTTCAA
ATATGCGTTTTTTTTCTGTCTGCTATCTATTTTTAGATACCTCTGTGTCA
CAGACCCAGTGGGACCACTTACAAGATTTTCGTCCCCGATAGAAAAAATA
CCCTACAATTTCAGCCCCACCAGGAAATTGCCTTTGATTTCACCTCGTAT
CGAGATTTGATGTAAAAATTGCATCCGAAAACCATCTCCGTTAGATATTT
TGAGCTTAGAACATAAAATAACAGAATATAACATGTAGTTTTTCACTGTG
CTCTGTTGTTCTTAATGTCTTAGTATTTTCAGAGTTAGTTTTCTCAACTA
GATGAATCGCATCGTTTTAATTTGTTAGTGTTAATTGGCTCGTTCTCTCC
ACATCTGATTAAAAAACATTCCTTATGTTAGCGTCTTATTTGGAACAGTT
CATTTCTGTTTCTGTTGTAACTCCGGACCATCATCAAATCTGCACTCGGG
AGATATTGTGGCAAAATCATGTAACGACTATTTTCTTATTTTCAGGTGGC
AATTACAATCNTGCACTCGGAAGAGATTGTGGCAAAATCATGTAACGATT
TTTTCTTATTTTCAGGTGGCAATTAAAATTATGCCCAAAAGTCTTGGCAT
CGAAACTGTCAAGACGGAACTGAACTGCATGCTTGCCCTGACTGGAACAA
AAAGCACTGTTCAGCTATTGAAATTCTTTCAGGGCAGCATGCACGTATAC
TTCGTCCTTGAATTCTGTAGTGGTGGAGATTTGGCAAATTTTGTTCTTAA
CAAAAAACCCCAAAACAAAACCCAGATTTTCAAGGACATTTTTCTTGGTG
TGCAGCAATTCCACCAAGAAAACATTGCACATCGGTAAGATCTTTTTGTT
TCATATTTCTCTATTTTTTTTATTTACACCAGACTAAGATGGTAATTAAG
ATTCTGATTAACTAATTTGAATAGGGGTAGCAAGATATCTTGAAAATTGA
GCTCAATTATTTATTAAGGTCAAGCCTTTTTTCTTGTTTTCTAGCGATTT
GAAGTTATCCAATATTCTCATCGATCAAAATGGCGTCATCAAGATTGCTG
GTAAGCATATATAATAAAGCCCGATATAAAGTTCAAACTAATATGAGCAG
TGGCTCATTCGAAGGCTCAAGAACGACCGATACGCTTCTTTTAGAGCTTT
TAATAGGAAAATACATTGAACATTCACAATTAGTTAGACACAGTGTATTC
ATATACATACAACAACCAATCAAGCTAGAACGTAAAGATTTAGTAAAACT
CCACGTACTGAAGACTACCGATCAACTTAAACTTTTCCATTTATTATATC
AAACAAGCATAACTTATATTGAAATTTCAATTCAGATTTTGGTCTTGGAT
TTATCAAATCGACCCCAGAAGAACTCTGCGAGGATTAT

Coding sequence (CDS) from alignment at sc0000162:103004..104691-

>TCONS_00013136 ID=TCONS_00013136|Name=TCONS_00013136|organism=Clytia hemisphaerica|type=CDS|length=2160bp|location=Sequence derived from alignment at sc0000162:103004..104691- (Clytia hemisphaerica)
ATTTTGGTCTTGGATTTATCAAATCGACCCCAGAAGAACTCTGCGAGGAT
TATCGATTTGAAGTTATCCAATATTCTCATCGATCAAAATGGCGTCATCA
AGATTGCTGGTGGCAATTAAAATTATGCCCAAAAGTCTTGGCATCGAAAC
TGTCAAGACGGAACTGAACTGCATGCTTGCCCTGACTGGAACAAAAAGCA
CTGTTCAGCTATTGAAATTCTTTCAGGGCAGCATGCACGTATACTTCGTC
CTTGAATTCTGTAGTGGTGGAGATTTGGCAAATTTTGTTCTTAACAAAAA
ACCCCAAAACAAAACCCAGATTTTCAAGGACATTTTTCTTGGTGTGCAGC
AATTCCACCAAGAAAACATTGCACATCGATGGCTGTTGAAGCACACGAGT
GTTTACAACATGGTTTTGTTCTGGGACGGAGCCTGGGCGAAGGAGCATTC
GGAATGGTTAAGCAAGCAGCGTATGCAAACTTTAACCACGTAAATGACTC
TCTTGCCAAAAGGCTCCGTCGCCTGGGGCACAATGATCAAATTTTGGTCT
TGGATTTATCAAATCGACCCCAGAAGAACTCTGCGAGGATTATCGATTTG
AAGTTATCCAATATTCTCATCGATCAAAATGGCGTCATCAAGATTGCTGG
TGGCAATTAAAATTATGCCCAAAAGTCTTGGCATCGAAACTGTCAAGACG
GAACTGAACTGCATGCTTGCCCTGACTGGAACAAAAAGCACTGTTCAGCT
ATTGAAATTCTTTCAGGGCAGCATGCACGTATACTTCGTCCTTGAATTCT
GTAGTGGTGGAGATTTGGCAAATTTTGTTCTTAACAAAAAACCCCAAAAC
AAAACCCAGATTTTCAAGGACATTTTTCTTGGTGTGCAGCAATTCCACCA
AGAAAACATTGCACATCGATGGCTGTTGAAGCACACGAGTGTTTACAACA
TGGTTTTGTTCTGGGACGGAGCCTGGGCGAAGGAGCATTCGGAATGGTTA
AGCAAGCAGCGTATGCAAACTTTAACCACGTAAATGACTCTCTTGCCAAA
AGGCTCCGTCGCCTGGGGCACAATGATCAAATTTTGGTCTTGGATTTATC
AAATCGACCCCAGAAGAACTCTGCGAGGATTATCGATTTGAAGTTATCCA
ATATTCTCATCGATCAAAATGGCGTCATCAAGATTGCTGGTGGCAATTAA
AATTATGCCCAAAAGTCTTGGCATCGAAACTGTCAAGACGGAACTGAACT
GCATGCTTGCCCTGACTGGAACAAAAAGCACTGTTCAGCTATTGAAATTC
TTTCAGGGCAGCATGCACGTATACTTCGTCCTTGAATTCTGTAGTGGTGG
AGATTTGGCAAATTTTGTTCTTAACAAAAAACCCCAAAACAAAACCCAGA
TTTTCAAGGACATTTTTCTTGGTGTGCAGCAATTCCACCAAGAAAACATT
GCACATCGATGGCTGTTGAAGCACACGAGTGTTTACAACATGGTTTTGTT
CTGGGACGGAGCCTGGGCGAAGGAGCATTCGGAATGGTTAAGCAAGCAGC
GTATGCAAACTTTAACCACGTAAATGACTCTCTTGCCAAAAGGCTCCGTC
GCCTGGGGCACAATGATCAAATTTTGGTCTTGGATTTATCAAATCGACCC
CAGAAGAACTCTGCGAGGATTATCGATTTGAAGTTATCCAATATTCTCAT
CGATCAAAATGGCGTCATCAAGATTGCTGGTGGCAATTAAAATTATGCCC
AAAAGTCTTGGCATCGAAACTGTCAAGACGGAACTGAACTGCATGCTTGC
CCTGACTGGAACAAAAAGCACTGTTCAGCTATTGAAATTCTTTCAGGGCA
GCATGCACGTATACTTCGTCCTTGAATTCTGTAGTGGTGGAGATTTGGCA
AATTTTGTTCTTAACAAAAAACCCCAAAACAAAACCCAGATTTTCAAGGA
CATTTTTCTTGGTGTGCAGCAATTCCACCAAGAAAACATTGCACATCGAT
GGCTGTTGAAGCACACGAGTGTTTACAACATGGTTTTGTTCTGGGACGGA
GCCTGGGCGAAGGAGCATTCGGAATGGTTAAGCAAGCAGCGTATGCAAAC
TTTAACCACGTAAATGACTCTCTTGCCAAAAGGCTCCGTCGCCTGGGGCA
CAATGATCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007340XLOC_007340Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013136-exon-sc0000162-1575043694:104406..104691TCONS_00013136-exon-sc0000162-1575043694:104406..104691Clytia hemisphaericaexon
TCONS_00013136-exon-sc0000162-1575043694:103558..103826TCONS_00013136-exon-sc0000162-1575043694:103558..103826Clytia hemisphaericaexon
TCONS_00013136-exon-sc0000162-1575043694:103342..103397TCONS_00013136-exon-sc0000162-1575043694:103342..103397Clytia hemisphaericaexon
TCONS_00013136-exon-sc0000162-1575043694:103004..103056TCONS_00013136-exon-sc0000162-1575043694:103004..103056Clytia hemisphaericaexon
TCONS_00013136-exon-sc0000162-1510915933:104406..104691TCONS_00013136-exon-sc0000162-1510915933:104406..104691Clytia hemisphaericaexon
TCONS_00013136-exon-sc0000162-1510915933:103558..103826TCONS_00013136-exon-sc0000162-1510915933:103558..103826Clytia hemisphaericaexon
TCONS_00013136-exon-sc0000162-1510915933:103342..103397TCONS_00013136-exon-sc0000162-1510915933:103342..103397Clytia hemisphaericaexon
TCONS_00013136-exon-sc0000162-1510915933:103004..103056TCONS_00013136-exon-sc0000162-1510915933:103004..103056Clytia hemisphaericaexon
TCONS_00013136-exon-sc0000162-1491911889:104406..104691TCONS_00013136-exon-sc0000162-1491911889:104406..104691Clytia hemisphaericaexon
TCONS_00013136-exon-sc0000162-1491911889:103558..103826TCONS_00013136-exon-sc0000162-1491911889:103558..103826Clytia hemisphaericaexon
TCONS_00013136-exon-sc0000162-1491911889:103342..103397TCONS_00013136-exon-sc0000162-1491911889:103342..103397Clytia hemisphaericaexon
TCONS_00013136-exon-sc0000162-1491911889:103004..103056TCONS_00013136-exon-sc0000162-1491911889:103004..103056Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013136-proteinTCONS_00013136-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000162supercontigsc0000162:103004..104691 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0779731	0	0.264855	0.863732	0.210302	0.166184	0.90222	0.656948	0.459945	0.488328	0	0.519296	0.20743	0.323127	0	0.142544	0.117068	0.119991	0.165774	0.0867354	0.226166	0.441264	0	0.0812797	0.66973	0.896577	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000719Prot_kinase_dom
IPR008271Ser/Thr_kinase_AS
IPR011009Kinase-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004672protein kinase activity
GO:0005524ATP binding
Vocabulary: Biological Process
TermDefinition
GO:0006468protein phosphorylation
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006468 protein phosphorylation
molecular_function GO:0005524 ATP binding
molecular_function GO:0004672 protein kinase activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013136 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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