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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013127 ID=TCONS_00013127|Name=TCONS_00013127|organism=Clytia hemisphaerica|type=transcript|length=4954bpRun BLAST on NCBI protein sequence of TCONS_00013127-protein >TCONS_00013127-protein ID=TCONS_00013127-protein|Name=TCONS_00013127-protein|organism=Clytia hemisphaerica|type=polypeptide|length=736bp MFKKMLGSKKDNWNSYKKECIERMDELSEVFSGTKPLTRVEKNENLMAWFRun BLAST on NCBI transcript from alignment at sc0000162:378818..402669+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00013127 ID=TCONS_00013127|Name=TCONS_00013127|organism=Clytia hemisphaerica|type=transcript|length=23852bp|location=Sequence derived from alignment at sc0000162:378818..402669+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000162:378818..402669+ >TCONS_00013127 ID=TCONS_00013127|Name=TCONS_00013127|organism=Clytia hemisphaerica|type=CDS|length=46431bp|location=Sequence derived from alignment at sc0000162:378818..402669+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00013127 vs. Swiss-Prot (Human)
Match: WASC5 (WASH complex subunit 5 OS=Homo sapiens GN=WASHC5 PE=1 SV=1) HSP 1 Score: 989.949 bits (2558), Expect = 0.000e+0 Identity = 480/751 (63.91%), Postives = 605/751 (80.56%), Query Frame = 2
Query: 86 KXLFQLLLNTAQFEFLLKEMFKKMLGSKKDNWNSYKKECIERMDELSEVFSGTKPLTRVEKNENLMAWFKEMSKQIDSLDYEDATSAGRKMIQLIQALEEVQEFHQLETNLQVKQFLSDTRRFLHQMIRTINIKEEVLITIELVGDTSYAWQIMDSYTSLMQEGIKRQPTLVIKLRAAFLKMASALDLPLVRISEAKSPDLVSVSQYYSGVLVAYLRKVLQIIPESIFGLLAVIINILSRKMKEVPTRLDKDKLRDYAQLDERYEVAKNTHAISVFTEGIFLMKTTLVGVIKIDPKQLLEDGIRKELVKKVASALHKGIIFSPKPKPGELVQKLKSLETTMDAYCRSFEYIQDYVNIYGLKIWQEEVSRIINYNIEQECNSFLREKILDWQSIYQSSTIPIPRYASVDGSVNFIGRLAREIQRITDPKTTIYIEQMNAWYDIRTREEVMNSGIFSLVQKSIGTPGLVGLDKLLSFMIVKELQNIVTYLQRVLLKDQNNVKLLGDFGKTVSPVKGVIANPNKLYTTVITKLQKFWTPLTDFIVKVGQMQIIRRKIANELKFSCKFDSKELCSVIKTLNDTLMRDIEAHYKNPDLAYPSEDNPLLYETTSYLESTGISNPCLKIYITTKKNPYFSIITSLLTISQLAKLTFQKSIGGMIPKKSNDPLDNTPFVLGLVTLLKQYHSDATDQFFALLGQYVRSTAGSNMTSPKLNDLSPEVVNTLCFLEQFLLYSEISRKAIETHVPAYLFEDFK 2338
+ LFQLLL+TAQFEF+LKEMFK+ML K+ W YKKE ERM EL++VFSG KPLTRVEKNENL AWF+E+SKQI SL+Y+D+T+AGRK +QLIQALEEVQEFHQLE+NLQV QFL+DTR+FLHQMIRTINIKEEVLIT+++VGD S+AWQ++DS+TS+MQE I+ P++V KLRA FLK+ASALDLPL+RI++A SPDL+SVSQYYSG LV+Y+RKVLQIIPES+F L II + + + EVPTRLDKDKLRDYAQL RYEVAK THAIS+FTEGI +MKTTLVG+IK+DPKQLLEDGIRKELVK+VA ALH+G+IF+P+ KP EL+ KLK L TMD + RSFEYIQDYVNIYGLKIWQEEVSRIINYN+EQECN+FLR KI DWQS+YQS+ IPIP++ VD SV FIGRL REI RITDPK T +I+Q+N WYD++T +EV +S +FS +Q ++GT GL GLD+LL FMIVKELQN ++ Q+++L+D+ L VSP+K ++AN NK+Y + I K QK WT + I+KVGQMQI+R++IANEL +SC+FDSK L + ++ LN L+ DIEAHY++P L YP EDN LLYE T+YLE+ GI NP KIYITTK+ PYF I+ L I+QL KL + K++ GM+ +K DP+D P VLGL+TLLKQ+HS T+QF AL+GQ++ ST TS K+ ++ +VV L FLE ++ Y+++ R+ E HVP ++F++F+
Sbjct: 408 RILFQLLLDTAQFEFILKEMFKQMLSEKQTKWEHYKKEGSERMTELADVFSGVKPLTRVEKNENLQAWFREISKQILSLNYDDSTAAGRKTVQLIQALEEVQEFHQLESNLQVCQFLADTRKFLHQMIRTINIKEEVLITMQIVGDLSFAWQLIDSFTSIMQESIRVNPSMVTKLRATFLKLASALDLPLLRINQANSPDLLSVSQYYSGELVSYVRKVLQIIPESMFTSLLKIIKLQTHDIIEVPTRLDKDKLRDYAQLGPRYEVAKLTHAISIFTEGILMMKTTLVGIIKVDPKQLLEDGIRKELVKRVAFALHRGLIFNPRAKPSELMPKLKELGATMDGFHRSFEYIQDYVNIYGLKIWQEEVSRIINYNVEQECNNFLRTKIQDWQSMYQSTHIPIPKFTPVDESVTFIGRLCREILRITDPKMTCHIDQLNTWYDMKTHQEVTSSRLFSEIQTTLGTFGLNGLDRLLCFMIVKELQNFLSMFQKIILRDRTVQDTLKTLMNAVSPLKSIVANSNKIYFSAIAKTQKIWTAYLEAIMKVGQMQILRQQIANELNYSCRFDSKHLAAALENLNKALLADIEAHYQDPSLPYPKEDNTLLYEITAYLEAAGIHNPLNKIYITTKRLPYFPIVNFLFLIAQLPKLQYNKNL-GMVCRKPTDPVDWPPLVLGLLTLLKQFHSRYTEQFLALIGQFICSTV-EQCTSQKIPEIPADVVGALLFLEDYVRYTKLPRRVAEAHVPNFIFDEFR 1156 The following BLAST results are available for this feature:
BLAST of TCONS_00013127 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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