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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013123 ID=TCONS_00013123|Name=TCONS_00013123|organism=Clytia hemisphaerica|type=transcript|length=2717bp
aatataaaaaaattgaagactTCGACAGAGATGCCAACAATGACATCCGG
AAAGTTAAGAACGTCAGAAAGGCTGAGAATATCTGAAAGGTTAAGGACag
cagaaaaattgaaaacccCAGAAAAGCCAACACAATCAAGAACAAACATT
TTTAATCTTCCACAAGAGATTGTTTTGATTATTGCTGCCTATTTGAACCT
CGATGATGTGAAAGAATTCAAATGCACTTGCAAATATTTCTATCAACTGA
TGGGGTGTAAGCCTGTCATGGGGCGTATGAAAGTTATCCCTTCTGCTTTC
CAAAACCAACTGTTAACATTTTTGACAAATAATATGGGTGGTAAATTTGT
CTGCCTATATTTGACCAATATTGAACTTGATCATGTGAAAAAGATTTTAC
GGTATGGCCCTAATCTTACTGGATTAGGAATAAAGATACAACATTTATAC
AAAGGCTTAGAGGAAGTTTGTCCCAATTTAGAATATCTACAACTAGATAT
TTCAGAACCTTTTAAACATGCCGGTCGCAGAAAATtgtctttttatttca
attgtTTGTCAGAATTAGGAAACTTAAGTACCATAGTTTTGAGTGGAAAG
TCCAACAATGATAACAACCCAGGTCTTTTACGAAATGAAGAGAGTATTTT
CTCAAGTGATGCTATTCTGTCCATCATTGAACATACACCACAGATCAAAG
CAATCAAATTTCAACACATGCATCTTCTTGTTAGAAATCAAGATGTGTTT
TCAAATTGTATGTTGGCTTGTGATCATATTAGTTTCTGGTCATTTTACCA
TGTCACCACTTCATGGACCAGATTTAAAATACCTTCCAAAGTGAAAAGTT
TGAACTGCCAATTTACAAACTTTGTGCCAATCGATGCATCTCATAAAAAC
TTAGATAAAGTGATCATTATCACCAAACAAGCAATCAAACTTGACAATGG
TGCCATCCAAGTGTTGCCAAATGACCCtgaaagtttgttttggacattgT
ACGCAAAGATCAAACAAGtgtcaaaaaatgaaaaagatgaaattaCAACA
ATTGCCAATACCAGTTCTGTCCTTCTGATTGCATTATTGTTGCCAACAAA
AGATGTTTTGAATTTCCCAAGGTTGAAGAATTGCTATTCACCATAGTTAG
GCTGTACTTttattcatttcaaatttcataTCGTTATTTGTTTGGGGAAG
GAATCAACACAGAAAGTACTCGATGCCAATAATAGAGCTTCGATTAAAAT
CCATATACTTCTATGACAAAATTGACATTGCAATTTTCTTGGAAGTTTAA
TCATAGGTTGATTTCTTTGTTTACAGGGGAAGATGGATAAAATAAAACTT
CAGAAATTGCCGATACCAATTTTGTGCATGATTGCGTCCTTGCTGCCTAC
AAgtgatgttttgaattttcgtctggtatgcaaaatattttatgaagTGA
CGTTATGTAGAGAAGTATTAAAACAAATCAAAGTAAAGGCAAGAAATCGA
AGTTACAAgccttttaaaaagtttttaacggAATCGTTATCTGGTGGAAG
GTTTATTCATCTAGATTTGTTTTTAGCTACTGGAGCCACCATagcaaata
ttttaaatcttaCACCAAATGTTAATAATCTAATCATCAATATCAAAGAT
ATAAAATGCTTCAAAAGTCAAAAGCTTGATTATCTTCATGCTTTAGTTTT
GGTCGATAAAGATCTAATGTACTTTGATAAAATACCCGAatctaaatatt
caaaatattttcaaccgcTTTCAGAACTGTCCAGTGTCAAAGATTTATCA
TTAAAATGCCAAGGACAGTCTTATAAGTCAAACCTTATCCAAATTATAAT
CAAATCCCTGaaaaatgttcgaaaaattCACTTGGAATCCCTTATCGTTA
ATAACTCGGCACATTTTGAtgaatttaaagattttctatCATCTTGTCGC
ACCATAACCTCCTGGAGTTTTTTCGATGTTCGACTGGTGAAGAAAGGAGT
TCGTCTACCGGAGACTGTGACAAACTATGAGTGCACCAAATGTATATTTT
CGTTAATTGATAAACAACATTGCTCGTTACAAAGACTTAAACTAGCATCT
CTAGTACCGTATGTTGataaaatttggaaagaaaatagttttCGTGATTT
ACGATATTTAGAACTTCAAAATTGTTTCTTCTATTTCAACCCATTGGAAA
GCTGCAAGAAGTTGCATACTTTGAAATTGTTGAGATGTCATCTACCGTTC
TATTATTTAATGAAATTATCAACAAATGTTAAAGATAATTTGAAGGAGCT
GACCATACAGTCGCATAAAGACTTCAAGGATGAAATGCTTCTCGAAGTAC
TGAACTCTTTCAAAAGTTTGACAAGGCTAACGCTGATTAATATGAATCTG
CTCACACCGAGTTTCTTAACTAAAATCAAACTTTcgaaattaaaattcat
ttttataaaGGACAGTCTTAATTTTAATACTCGAGAATTTAGGGACCATA
TTGAAACgatgaaaaatgaattatcaTTTACAGTAGTATTAGTGAACGAC
TCGAAAAATGTAAAATCTTCAATTCTAAAACTATAGTCAgggaaatttta
gttttagaaaaacttttataacattttttaccAGCtagattttttatgtt
ttcttaaattttgatagattcaattcaattcaattctaCTATGAAATATC
AATTCCATACACATCAt Run BLAST on NCBI protein sequence of TCONS_00013123-protein >TCONS_00013123-protein ID=TCONS_00013123-protein|Name=TCONS_00013123-protein|organism=Clytia hemisphaerica|type=polypeptide|length=417bp
MDKIKLQKLPIPILCMIASLLPTSDVLNFRLVCKIFYEVTLCREVLKQIK
VKARNRSYKPFKKFLTESLSGGRFIHLDLFLATGATIANILNLTPNVNNL
IINIKDIKCFKSQKLDYLHALVLVDKDLMYFDKIPESKYSKYFQPLSELS
SVKDLSLKCQGQSYKSNLIQIIIKSLKNVRKIHLESLIVNNSAHFDEFKD
FLSSCRTITSWSFFDVRLVKKGVRLPETVTNYECTKCIFSLIDKQHCSLQ
RLKLASLVPYVDKIWKENSFRDLRYLELQNCFFYFNPLESCKKLHTLKLL
RCHLPFYYLMKLSTNVKDNLKELTIQSHKDFKDEMLLEVLNSFKSLTRLT
LINMNLLTPSFLTKIKLSKLKFIFIKDSLNFNTREFRDHIETMKNELSFT
VVLVNDSKNVKSSILKL Run BLAST on NCBI transcript from alignment at sc0000162:366157..369914+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013123 ID=TCONS_00013123|Name=TCONS_00013123|organism=Clytia hemisphaerica|type=transcript|length=3758bp|location=Sequence derived from alignment at sc0000162:366157..369914+ (Clytia hemisphaerica)
aatataaaaaaattgaagactTCGACAGAGATGCCAACAATGACATCCGG
AAAGTTAAGAACGTCAGAAAGGCTGAGAATATCTGAAAGGTTAAGGACag
cagaaaaattgaaaacccCAGAAAAGCCAACACAATCAAGAACAAACATT
TTTAATCTTCCACAAGAGATTGTTTTGATTATTGCTGCCTATTTGAACCT
CGATGATGTGAAAGAATTCAAATGCACTTGCAAATATTTCTATCAACTGA
TGGGGTGTAAGCCTGTCATGGGGCGTATGAAAGTTATCCCTTCTGCTTTC
CAAAACCAACTGTTAACATTTTTGACAAATAATATGGGTGGTAAATTTGT
CTGCCTATATTTGACCAATATTGAACTTGATCATGTGAAAAAGATTTTAC
GGTATGGCCCTAATCTTACTGGATTAGGAATAAAGATACAACATTTATAC
AAAGGCTTAGAGGAAGTTTGTCCCAATTTAGAATATCTACAACTAGATAT
TTCAGAACCTTTTAAACATGCCGGTCGCAGAAAATtgtctttttatttca
attgtTTGTCAGAATTAGGAAACTTAAGTACCATAGTTTTGAGTGGAAAG
TCCAACAATGATAACAACCCAGGTCTTTTACGAAATGAAGAGAGTATTTT
CTCAAGTGATGCTATTCTGTCCATCATTGAACATACACCACAGATCAAAG
CAATCAAATTTCAACACATGCATCTTCTTGTTAGAAATCAAGATGTGTTT
TCAAATTGTATGTTGGCTTGTGATCATATTAGTTTCTGGTCATTTTACCA
TGTCACCACTTCATGGACCAGATTTAAAATACCTTCCAAAGTGAAAAGTT
TGAACTGCCAATTTACAAACTTTGTGCCAATCGATGCATCTCATAAAAAC
TTAGATAAAGTGATCATTATCACCAAACAAGCAATCAAACTTGACAATGG
TGCCATCCAAGTGTTGCCAAATGACCCtgaaagtttgttttggacattgT
ACGCAAAGATCAAACAAGGTATTATATCGGTGGAATCTGTCGATTACAAG
TTTTTTCGTGTCCAATTATTCAATATGCCATATTGTACTATTTCAGGTTT
TCTTGATACAGATATCAACGGTGTGGCTTGTTCCATATCAGAACTTTACA
TCAATGAACAAAACACCATCAAGTTAAAGGGCATCACTTGTCCACAAACC
TTCAACAATAACAGACTTGTTGCCCTCCTATCTAAAGTTCATAATTTGAA
GACACTGGTACTTGAACATCTCAATGACGTAACTGTTGATTTTATGGATG
AAGTCGAATTTGAAAATATGGACACGATGATTTTGAGAAGTtgtaaaagt
ctttcaaagtctaaTGTTGATGAAAAGTTGAAAACTTTAGAATCGCAACC
TTCTTATGATGTCGTGGTACGCATGTAAAGTATTTTTCTTAAGGGGGATG
GTTTTTagattcaaaatttcattgaagcCTCCCAGGAGTTTCATTTGAAC
TTGAACCTTTTAATAAGCGAATGCCAGCTagcaaaaattatttgaaaaga
cTCCAGTAGCTTTAACGAATgtgaaaatgaatcaaaattaaagtgCGACT
TGTTAATGGTTGCAAATcattcaagaaatatttttgtttgacTAAAAATT
GAACTCAAAAAAATGAATAGATCCATCCTGCCTCTGTGATCACAATATAA
TTATTGTCTGTTTAGGAATTTgtaaattattatatttttgtaactaaaaa
ttattttctactCACATTGTTTAAAATATGTTTCAACCTTGCTCTTCCAT
TTCCTTCTCTTTCCTGGTTCATGCTTTGCTCGTAATTCATTAAGAGATAT
GATTTTGATAACTTTGtaagttttttcaaaaccaTGTAGGTCTGAAGTTT
CTCTACTAAGTACATTTTAATATAATGAAGTTATATCTTCTCATAACTTA
CTacatcttgtttttttttcagtgtcaaaaaatgaaaaagatgaaattaC
AACAATTGCCAATACCAGTTCTGTCCTTCTGATTGCATTATTGTTGCCAA
CAAAAGATGTTTTGAATTTCCCAAGGTTGAAGAATTGCTATTCACCATAG
TTAGGCTGTAGTTttattcatttcaaatttcatttcgttATTTGTTTGGG
GAAGGAAGAAAGTACTCGATGCCAATAATANTGATAGTTAGGCTGTACTT
ttattcatttcaaatttcataTCGTTATTTGTTTGGGGAAGGAATCAACA
CAGAAAGTACTCGATGCCAATAATAGAGCTTCGATTAAAATCCATATACT
TCTATGACAAAATTGACATTGCAATTTTCTTGGAAGTTTAATCATAGGTT
GATTTCTTTGTTTACAGGGGAAGATGGATAAAATAAAACTTCAGAAATTG
CCGATACCAATTTTGTGCATGATTGCGTCCTTGCTGCCTACAAgtgatgt
tttgaattttcgtctggtatgcaaaatattttatgaagTGACGTTATGTA
GAGAAGTATTAAAACAAATCAAAGTAAAGGCAAGAAATCGAAGTTACAAg
ccttttaaaaagtttttaacggAATCGTTATCTGGTGGAAGGTTTATTCA
TCTAGATTTGTTTTTAGCTACTGGAGCCACCATagcaaatattttaaatc
ttaCACCAAATGTTAATAATCTAATCATCAATATCAAAGATATAAAATGC
TTCAAAAGTCAAAAGCTTGATTATCTTCATGCTTTAGTTTTGGTCGATAA
AGATCTAATGTACTTTGATAAAATACCCGAatctaaatattcaaaatatt
ttcaaccgcTTTCAGAACTGTCCAGTGTCAAAGATTTATCATTAAAATGC
CAAGGACAGTCTTATAAGTCAAACCTTATCCAAATTATAATCAAATCCCT
GaaaaatgttcgaaaaattCACTTGGAATCCCTTATCGTTAATAACTCGG
CACATTTTGAtgaatttaaagattttctatCATCTTGTCGCACCATAACC
TCCTGGAGTTTTTTCGATGTTCGACTGGTGAAGAAAGGAGTTCGTCTACC
GGAGACTGTGACAAACTATGAGTGCACCAAATGTATATTTTCGTTAATTG
ATAAACAACATTGCTCGTTACAAAGACTTAAACTAGCATCTCTAGTACCG
TATGTTGataaaatttggaaagaaaatagttttCGTGATTTACGATATTT
AGAACTTCAAAATTGTTTCTTCTATTTCAACCCATTGGAAAGCTGCAAGA
AGTTGCATACTTTGAAATTGTTGAGATGTCATCTACCGTTCTATTATTTA
ATGAAATTATCAACAAATGTTAAAGATAATTTGAAGGAGCTGACCATACA
GTCGCATAAAGACTTCAAGGATGAAATGCTTCTCGAAGTACTGAACTCTT
TCAAAAGTTTGACAAGGCTAACGCTGATTAATATGAATCTGCTCACACCG
AGTTTCTTAACTAAAATCAAACTTTcgaaattaaaattcatttttataaa
GGACAGTCTTAATTTTAATACTCGAGAATTTAGGGACCATATTGAAACga
tgaaaaatgaattatcaTTTACAGTAGTATTAGTGAACGACTCGAAAAAT
GTAAAATCTTCAATTCTAAAACTATAGTCAgggaaattttagttttagaa
aaacttttataacattttttaccAGCtagattttttatgttttcttaaat
tttgatagattcaattcaattcaattctaCTATGAAATATCAATTCCATA
CACATCAt Coding sequence (CDS) from alignment at sc0000162:366157..369914+ >TCONS_00013123 ID=TCONS_00013123|Name=TCONS_00013123|organism=Clytia hemisphaerica|type=CDS|length=1254bp|location=Sequence derived from alignment at sc0000162:366157..369914+ (Clytia hemisphaerica)
ATGGATAAAATAAAACTTCAGAAATTGCCGATACCAATTTTGTGCATGAT
TGCGTCCTTGCTGCCTACAAgtgatgttttgaattttcgtctggtatgca
aaatattttatgaagTGACGTTATGTAGAGAAGTATTAAAACAAATCAAA
GTAAAGGCAAGAAATCGAAGTTACAAgccttttaaaaagtttttaacggA
ATCGTTATCTGGTGGAAGGTTTATTCATCTAGATTTGTTTTTAGCTACTG
GAGCCACCATagcaaatattttaaatcttaCACCAAATGTTAATAATCTA
ATCATCAATATCAAAGATATAAAATGCTTCAAAAGTCAAAAGCTTGATTA
TCTTCATGCTTTAGTTTTGGTCGATAAAGATCTAATGTACTTTGATAAAA
TACCCGAatctaaatattcaaaatattttcaaccgcTTTCAGAACTGTCC
AGTGTCAAAGATTTATCATTAAAATGCCAAGGACAGTCTTATAAGTCAAA
CCTTATCCAAATTATAATCAAATCCCTGaaaaatgttcgaaaaattCACT
TGGAATCCCTTATCGTTAATAACTCGGCACATTTTGAtgaatttaaagat
tttctatCATCTTGTCGCACCATAACCTCCTGGAGTTTTTTCGATGTTCG
ACTGGTGAAGAAAGGAGTTCGTCTACCGGAGACTGTGACAAACTATGAGT
GCACCAAATGTATATTTTCGTTAATTGATAAACAACATTGCTCGTTACAA
AGACTTAAACTAGCATCTCTAGTACCGTATGTTGataaaatttggaaaga
aaatagttttCGTGATTTACGATATTTAGAACTTCAAAATTGTTTCTTCT
ATTTCAACCCATTGGAAAGCTGCAAGAAGTTGCATACTTTGAAATTGTTG
AGATGTCATCTACCGTTCTATTATTTAATGAAATTATCAACAAATGTTAA
AGATAATTTGAAGGAGCTGACCATACAGTCGCATAAAGACTTCAAGGATG
AAATGCTTCTCGAAGTACTGAACTCTTTCAAAAGTTTGACAAGGCTAACG
CTGATTAATATGAATCTGCTCACACCGAGTTTCTTAACTAAAATCAAACT
TTcgaaattaaaattcatttttataaaGGACAGTCTTAATTTTAATACTC
GAGAATTTAGGGACCATATTGAAACgatgaaaaatgaattatcaTTTACA
GTAGTATTAGTGAACGACTCGAAAAATGTAAAATCTTCAATTCTAAAACT
ATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013123-exon-sc0000162-1491911889:366157..367174 | TCONS_00013123-exon-sc0000162-1491911889:366157..367174 | Clytia hemisphaerica | exon |
| TCONS_00013123-exon-sc0000162-1510915933:366157..367174 | TCONS_00013123-exon-sc0000162-1510915933:366157..367174 | Clytia hemisphaerica | exon |
| TCONS_00013123-exon-sc0000162-1575043694:366157..367174 | TCONS_00013123-exon-sc0000162-1575043694:366157..367174 | Clytia hemisphaerica | exon |
| TCONS_00013123-exon-sc0000162-1491911889:368129..368260 | TCONS_00013123-exon-sc0000162-1491911889:368129..368260 | Clytia hemisphaerica | exon |
| TCONS_00013123-exon-sc0000162-1510915933:368129..368260 | TCONS_00013123-exon-sc0000162-1510915933:368129..368260 | Clytia hemisphaerica | exon |
| TCONS_00013123-exon-sc0000162-1575043694:368129..368260 | TCONS_00013123-exon-sc0000162-1575043694:368129..368260 | Clytia hemisphaerica | exon |
| TCONS_00013123-exon-sc0000162-1491911889:368348..369914 | TCONS_00013123-exon-sc0000162-1491911889:368348..369914 | Clytia hemisphaerica | exon |
| TCONS_00013123-exon-sc0000162-1510915933:368348..369914 | TCONS_00013123-exon-sc0000162-1510915933:368348..369914 | Clytia hemisphaerica | exon |
| TCONS_00013123-exon-sc0000162-1575043694:368348..369914 | TCONS_00013123-exon-sc0000162-1575043694:368348..369914 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000162 | supercontig | sc0000162:366157..369914 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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