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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013119 ID=TCONS_00013119|Name=TCONS_00013119|organism=Clytia hemisphaerica|type=transcript|length=2469bpRun BLAST on NCBI protein sequence of TCONS_00013119-protein >TCONS_00013119-protein ID=TCONS_00013119-protein|Name=TCONS_00013119-protein|organism=Clytia hemisphaerica|type=polypeptide|length=457bp MEHHNVSLETLQSDLDQLVTTITKFSTIIQSHLNDFIITEVWSNTQDARERun BLAST on NCBI transcript from alignment at sc0000162:319730..347447+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00013119 ID=TCONS_00013119|Name=TCONS_00013119|organism=Clytia hemisphaerica|type=transcript|length=27718bp|location=Sequence derived from alignment at sc0000162:319730..347447+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000162:319730..347447+ >TCONS_00013119 ID=TCONS_00013119|Name=TCONS_00013119|organism=Clytia hemisphaerica|type=CDS|length=15114bp|location=Sequence derived from alignment at sc0000162:319730..347447+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00013119 vs. Swiss-Prot (Human)
Match: MET25 (Methyltransferase-like protein 25 OS=Homo sapiens GN=METTL25 PE=2 SV=2) HSP 1 Score: 122.094 bits (305), Expect = 9.635e-29 Identity = 86/286 (30.07%), Postives = 142/286 (49.65%), Query Frame = 3
Query: 633 SAENMKEKMKTAHRSVTYDRYKTITHTVQASDPASDDTESLVTLIKENLNSSELVEERVDYILTGLHACGDLTTSAIKTFVKEKDFRAICIVGCCYNLISEK-------------GFPISEYGKKCGLNFGKSEKMLACQCPSRWLNTGQTL-NKSLLYRAILQKIFKD-LGFPDDEINQIKLRKLGK---KEISFRKYMETVRKRCPLLDQRLSIEDENTYFETYQGIWEQMKEFHWIRMQLAPFLERIIILDRVAFLLEKE-FTDVAAIRVFDQVTSPRCYAIF 1433
++E KE+ K +S + Y +T + A D ++++ D ++ GLH CGDL + ++ F + + +C VGCCY+L+SE+ GFP+ Y K+ G++ +M AC R + GQ L +SL YRA+LQ I KD G + R +GK K SF Y+ K+ L + +L + Y+E Y+ +++ F+ +++ LAP +E +I+LDR+ +L E+E A +++FD V SPRCYA+
Sbjct: 336 TSEANKERRKMTSKSSESNIYSPLTSFITADSELHD-----------------IIKDLEDCLMVGLHTCGDLAPNTLRIFTSNSEIKGVCSVGCCYHLLSEEFENQHKERTQEKWGFPMCHYLKEERWCCGRNARMSACLALER-VAAGQGLPTESLFYRAVLQDIIKDCYGITKCD------RHVGKIYSKCSSFLDYVRRSLKKLGLDESKLPEKIIMNYYEKYKPRMNELEAFNMLKVVLAPCIETLILLDRLCYLKEQEDIAWSALVKLFDPVKSPRCYAVI 597 The following BLAST results are available for this feature:
BLAST of TCONS_00013119 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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