TCONS_00013084 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013084
Unique NameTCONS_00013084
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length332

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013084 ID=TCONS_00013084|Name=TCONS_00013084|organism=Clytia hemisphaerica|type=transcript|length=332bp
GTTACATTGCAAACGAAAAGAAGCTTTTGACTATGGAGCTGATGAATTTA
TTGATATTTATTACTCTTCCATTTTTGCACAATGCCCAAGGACGGCCGAG
CAAGAAAGGTACAATTATCGTTCTCAACCCAAACAAGCCAACACGAGGCT
ACACTGAGCCATCGGAAGGGAGCTGTTGCGAATTAGGCCATCGTATCGCA
GACTTAGGATACAAACAATGCACCAATCAAAGACATAGTNTCAACTCAAC
AATGTATCTGACTGTACCATATAATTTTAtttggaaatatgctaatttaa
ttcaaattttaattttgtttttgagtttcGCA
Run BLAST on NCBI

protein sequence of TCONS_00013084-protein

>TCONS_00013084-protein ID=TCONS_00013084-protein|Name=TCONS_00013084-protein|organism=Clytia hemisphaerica|type=polypeptide|length=110bp
YIANEKKLLTMELMNLLIFITLPFLHNAQGRPSKKGTIIVLNPNKPTRGY
TEPSEGSCCELGHRIADLGYKQCTNQRHSXNSTMYLTVPYNFIWKYANLI
QILILFLSFA
Run BLAST on NCBI

transcript from alignment at sc0000162:191239..192089+

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013084 ID=TCONS_00013084|Name=TCONS_00013084|organism=Clytia hemisphaerica|type=transcript|length=851bp|location=Sequence derived from alignment at sc0000162:191239..192089+ (Clytia hemisphaerica)
GTTACATTGCAAACGAAAAGAAGCTTTTGACTATGGAGCTGATGAATTTA
TTGATATTTATTACTCTTCCATTTTTGCACAATGCCCAAGGACGGCCGAG
CAAGAAAGGTAGGCTCGTGCGAAATGTAGCGATCAACCATTTAGAAAAAC
GTGTGAAATTTTAAGATCATCGAATCTTGTGGATCCTTGCCAAATCGGAA
CTAATGACATCATGATGATGGCAATCGACTTGGATAAGATTACTAAGGAT
TTGGTTTGAATTTAGATCGAATTTAATTGACGGTCCCTAGTTGCCACTTA
CTTGGATCAAAAGCGAAACGCATTTCAAAGAGGACTTTNGTCTTATTTAG
GTGACAAcccttttttttctaatttaagcGTAACATTTGCATTTTATGAC
AACACAGTGATTTCACACCAACAATCTTCGCTACAtcgatttattttttg
atacgACTACATTGCCATTTTTAGGGccagttttttttctaaaatttttg
agtctggatacccggCAAATGTTATCGTAAAACGGTAATGGTTTTTTCGC
TAAACCTTGGTAATAAGTTTTCGGGGAAACACCTGTGACTTTAAGTTTAT
TTCGACAAATCCANTTTCCTTTTTCAGGTACAATTATCGTTCTCAACCCA
AACAAGCCAACACGAGGCTACACTGAGCCATCGGAAGGGAGCTGTTGCGA
ATTAGGCCATCGTATCGCAGACTTAGGATACAAACAATGCACCAATCAAA
GACATAGTNTCAACTCAACAATGTATCTGACTGTACCATATAATTTTAtt
tggaaatatgctaatttaattcaaattttaattttgtttttgagtttcGC
A

Coding sequence (CDS) from alignment at sc0000162:191239..192089+

>TCONS_00013084 ID=TCONS_00013084|Name=TCONS_00013084|organism=Clytia hemisphaerica|type=CDS|length=660bp|location=Sequence derived from alignment at sc0000162:191239..192089+ (Clytia hemisphaerica)
TACATTGCAAACGAAAAGAAGCTTTTGACTATGGAGCTGATGAATTTATT
GATATTTATTACTCTTCCATTTTTGCACAATGCCCAAGGACGGCCGAGCA
AGAAAGGTACAATTATCGTTCTCAACCCAAACAAGCCAACACGAGGCTAC
ACTGAGCCATCGGAAGGGAGCTGTTGCGAATTAGGCCATCGTATCGCAGA
CTTAGGATACAAACAATGCACCAATCAAAGACATAGTNTCAACTCAACAA
TGTATCTGACTGTACCATATAATTTTAtttggaaatatgctaatttaatt
caaattttaattttgtttttgagtttcGCATACATTGCAAACGAAAAGAA
GCTTTTGACTATGGAGCTGATGAATTTATTGATATTTATTACTCTTCCAT
TTTTGCACAATGCCCAAGGACGGCCGAGCAAGAAAGGTACAATTATCGTT
CTCAACCCAAACAAGCCAACACGAGGCTACACTGAGCCATCGGAAGGGAG
CTGTTGCGAATTAGGCCATCGTATCGCAGACTTAGGATACAAACAATGCA
CCAATCAAAGACATAGTNTCAACTCAACAATGTATCTGACTGTACCATAT
AATTTTAtttggaaatatgctaatttaattcaaattttaattttgttttt
gagtttcGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007324XLOC_007324Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013084-proteinTCONS_00013084-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013084-exon-sc0000162-1491911889:191239..191346TCONS_00013084-exon-sc0000162-1491911889:191239..191346Clytia hemisphaericaexon
TCONS_00013084-exon-sc0000162-1510915933:191239..191346TCONS_00013084-exon-sc0000162-1510915933:191239..191346Clytia hemisphaericaexon
TCONS_00013084-exon-sc0000162-1575043694:191239..191346TCONS_00013084-exon-sc0000162-1575043694:191239..191346Clytia hemisphaericaexon
TCONS_00013084-exon-sc0000162-1491911889:191866..192089TCONS_00013084-exon-sc0000162-1491911889:191866..192089Clytia hemisphaericaexon
TCONS_00013084-exon-sc0000162-1510915933:191866..192089TCONS_00013084-exon-sc0000162-1510915933:191866..192089Clytia hemisphaericaexon
TCONS_00013084-exon-sc0000162-1575043694:191866..192089TCONS_00013084-exon-sc0000162-1575043694:191866..192089Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000162supercontigsc0000162:191239..192089 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.33262	1.67705	2.19935	4.74862	4.44104	1.78161	2.37634	4.67165	7.67084	10.7924	17.4777	4.82623	3.63556	0.804646	2.90689	3.47114	0.257015	1.33509	4.08302	8.087	0.69332	2.72554	3.20402	1.50678	3.14091	1.23145	1.84444	1.63662	1.89187	1.55796
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013084 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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