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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013081 ID=TCONS_00013081|Name=TCONS_00013081|organism=Clytia hemisphaerica|type=transcript|length=524bp
CGGACACGGACAAGTCGATGGCGCTCGCTTCagattttctttccttttac
CAGTTTGCAAGTGAACAGGTGTCAGAGAACAGCAACAACCAGGACAAGAA
AAGATACCAAAATACTGAAAATGTCAAGATACAGGAAATCAGTTACATCA
GTCTACGTCAAAAACATTCATAATGAAGTCagGCCGGATGATCtgcgaaa
aatgtttttgaagtaTGGAGATATCAGTGATGTAATCTAACAAAGACAAA
GACAAAGTAAAGAtttgtttaatttcaaaagAAAGATTTCGAGACAACAA
AAGCTAAAGTAAAGACAAAGATAAAGGCTTTTAAAGACAAACTTTCCTGA
AAAAGACAAAGCAAAGACAAAAGAAccaaaagtttaatttttcaaagaca
aaGACAAAACCTTTAGCCAAAGCCAGCTCTCGAAAGAAAACACAATACAG
ACGAAGGAATGTTTAAGGCAAAGACAAAGACAAAGCTAAAGCCAAAAATG
GACACCAAATGTTCAAgtcaaaaa Run BLAST on NCBI transcript from alignment at sc0000162:147255..157160+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013081 ID=TCONS_00013081|Name=TCONS_00013081|organism=Clytia hemisphaerica|type=transcript|length=9906bp|location=Sequence derived from alignment at sc0000162:147255..157160+ (Clytia hemisphaerica)
CGGACACGGACAAGTCGATGGCGCTCGCTTCagattttctttccttttac
CAGTTTGCAAGTGAACAGGTGTCAGAGAACAGCAACAACCAGGACAAGAA
AAGATACCAAAATACTGAAAATGTCAAGATACAGGAAATCAGTTACATCA
GTCTACGTCAAAAACATTCATAATGAAGTCaggtatagaccttttttcaa
agaggacgtcctgttgaataattatgtagtccagccataaaacaCATGca
tactgtatcatgcatattgtaataattatgcaaggttttatcattatttt
tctgctggactacataattattcaaaagggtggcctctttgaaaaaaggt
ctattgatatCATAAGTTACAGTTTTTACACCATCGCATcataaccagac
ggtgtcaatcgaacaacttcgaacaaaaatcgcaatcgaaccaatcgaaa
gTAATCGAAcacgatcgaataattgcgattcgattgtcgaacgtaatcga
atctcaatcgaacagccgattcctgggtaatattcgattgtgttcgattg
cgttcgagtaacgTTAGATTGTTTCGattaatagttgactatgttccatt
tgttcgattacgattatgttcgatgagtttgattgcgattttaaattaaa
ttggatcactctgttagagctttttagcacgggcggccgagcgcttatta
agtatcgtacgaaagcgaataaaatctaaatcaatcgaacgtactcgaac
ataatcgaatacaatcgaacgtaattgaagcaatcgagcggcaaatcctg
ggtaatattctattgcgattcgattgcgttcgacaatcgaagtGCAATTA
tccgattgtgttcaattgcgttcaattgattcagcgttcgattcgttcga
ttgacaccgtctggtcatAAACTTTTAAGcaccagtagcggcctggctta
attttcttggtggtacaaactatgaaattggcgcccctggtatttttgtc
cttatttgcgccctataCCATTAAGTGAAACTATTAAACTGGTAAGAGCA
GTGACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNggtaagagc
agtgactggttgaaagtaacgcccggaatctctgagttaacaaagtttta
tttatacgaaggtggtggtaatgataatttgatatatatttccttgttat
ttcctgATCTTGCTGTACTCTCCATTAAatatcaatggctgaaagaagcc
ccaaaaattcgaaagttggcaagaataagggttctttgcaattgtggcgc
cgcaggcaaaaaaataatttggtgtaagaaaggtcaaacagcttataaga
tattctaaaaaggagaaagttagtccgcataagaccacacgaagcgccgc
aggcgaaaaaaaatttacattgcacttatagaacgcgctaaaaatgtgtc
aaagggcgcaaaatcgcccaaccaaacatcaaaaaaaattttggcgcccc
cttaaaaagcttttttggcgcccttctcaggtctttctgggtggtgcact
gcacaccctgcaccccctgccaggccgccacttaAGCACAAGCTCAAGCA
AGAAGGGCAGGGTCAGGGACAAAATTAGCCTGGGTGGTACCGTGAGCGTG
AAGTCGgctaacttgcatcagtggaggctaacatacatagccctcaaatg
actgaccaatcaaaacagcaaaatttcaaaacaaaagaactatGCAGCTT
TGCGTCCCAGCTCACTCTTACACTTTGATATTTGAGTCTACACCTACTCT
TGTGCTTTCCACATTTACCAGCGTCTTAGAACATCTTGcgctaatgtttt
taactttttattttattttatcctttatgtttccaaaatcacgaaaatgt
acGTAATGTATTATGTATGTGATAATTCAATAGAACATGAAATAGAACTA
GCACTAGaacttcccaacaactttcgtttttgcttatgtaggttttaaaa
tccacaagtaatgaatctcttatagctttatctgaataaatcaggttgaa
aatctttcgtcagttttcattccgtacgtttttatccacgtggtgaaccg
gtttccccgatttcccgataattaaaaattggaactttcccgtgggcgcg
gTTGGGTGTACCCGCcatcgcaaaatatttttcgtgaaaatttaccgtat
tctaacggtAATATAATCTAAATAGGAAAcaaattattaaatttgattct
ttttttgttcgtatttctaaatttcacgataaaaagaactatttacaact
tattttctttaacgggcgttgaatcgacattgacatatttaNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgacatatttaatg
atgtcataatcaatgccgtgcatattttgtcagcgccgtgcatattttgt
caacatctttttcattggataaataccactaaaataagagaagtaaacat
aaatttatcgcccgcgagcatgGCTTAGCCTAAGCGCACCTCtcattcat
tatctaagaattgaaacgggcaaagattaccgggcgggctgatagcggac
aaaggttatttgaagatattttcagttataatccaaggtagaacaaacta
aacatagaaagggggtattttttagtgctctatacgatgatcggtatttt
ttttgaattctatgtttagatttttctacccagccctgtTGCTATatacg
cgcgccctgttgctaagacctttgattgaaatcgaaagtgaaatgaggtc
ctgactggcTTGAACAGCTCATCCAACTCGTTGAGTCCGATGCTTCGACA
TTTCCTTGAGGCTGTTGGAGTCAGCTTGCCTAAGGTTGAAATAGTGGGCA
AGCAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNaaatattttggcctttaaagagcctg
ggggctaaaattaccaaaaatttgggggacctagattgttgggggaccta
gatgatctgactgagactctgggggctgtttaactaatttcaaaagagct
cttatcttactattaaatcaaatataaaaagcaaaagatttgttaacata
aatattaatacaagtaaaatttagttttcatttatcagtactgtactcgc
atatattttttattgacttctctctacGGGGACGGGAgaagaatgttttt
gttttaggtTATCTTGcttaggggacctagcacaaggcaattttttgggg
ggagctaaattgttggggggagctaaattgttggggggaccttactttgt
tggggggagctagaaactTGGCTGAAGCTATGTGCATTAGTTTTTGTAAC
TCTGGGGGCTAAATAACACttcataaatatttttctttactgttggtttt
taatttctctaaacctttatgttttcatgcaaagtgtgatctgatcctta
aaatgcaaaaatgaagaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAGTGAAACT
ATAAATTTTTAggtacatattttacaaaggCAAATATTTGTTAGGTTTAT
TTCATTAAGTGAGGATTTAAATGAATCGATGGAAGGCTTTTAAGCTTAGT
ATTTTCAGGACATCGAGACTTTGTTTCGCAAATCAAACTTAATTGTTTTT
GATTTATAGACCTGCTGCATGAAttcaggatttaattttttctcagaTTT
GAAAACCNgaaccccagtcggagccatgttgtgaggaaggtgtctaaagt
gttttttgaatacttctttggGGCAGTTTGTCAAATCTCTTATTGGTCTG
GGAAGGGTGTTAATTGAGGGCCTTCTTGGGAAAGACTTCCCctccagata
tttttgtgtttaatattgacagcttttagaTTGCAAATTCTCCCCGATCT
CTGATTTATATGGCAGGAAATGCCTCCTTTACTTTTGTCATAATCAAAAT
TCGGGACGTTGCCTTCAATGACGTTCCAGGTATAAATTATTTGATACCGC
TCTCTCCATCTTTCAAGGCTATACAGTTTTACTGATTTGAGTTTTTCCCA
ATAATCAAGATGTCTGAGGGATGgaattccctgtaaaaatgaTTTCTGAA
CTTCTTCCAGTTGCTGGATAAGACCACGCTTCCAGGGAGACCAGAGTTGA
GAACAGTAGTCCAAATGAGGGATGGCTAGTGCTTTCCATAAAGTTAACAT
GGTTTCAATTNTCATCAAACAGGTGTCGTCAGCAAACGATGCCTTATTAT
CAATATCTCGAATCATGATTAGGAACGCGGTCCCAGCACAGATCCTTGTG
GCACACCTGAAATAGAATCTGTTTCTGAGGACAAGGTTGAGTTTACTGAA
ACTCTCTGTGTTCGATGAGTCAAAAAGGATCTGATCCATTCAAGGAGTTT
ACCGGTTATGCCATTTCTCTGAAGCTTGTGTAACAAAATGGTGTGGTCTA
CTCAATCAAAAGCTTTACTGAAGTCTAAATAGGTCCAGGTGCTGAAGTTG
GTGACAGTGTACcgatttctttgacaaattccTCGATAGTCAGATTGATA
TCTTTAAGTGTTGGTATTTGTGNTTGTGTCAGAAAAATAACGAGAActtt
gcttcattttttttttctttttttttccgaTTTATTTAACGTTGGTGTTA
CATAGTTATAATTAAATACTAATTTATACCAACTATTGACAAAAATGATT
ATATGAAAAGATAATTTCTATAAAACTANAGTTCGTAGTTTTGAAGAGGT
TGGGTGAAGACAGACTTGTATTGGTTTTGTAGGATATTGGCCATCAAAAG
GGTATCATTAGTCAATTTGTTAGTGTCTGGATCGATTAATAAGGGTACAA
CTTTtggtttagatttcgagaaGCGATTAGCGTACAAGTAAAAGAATTTT
GGGTTGGATTTGATTTTAGAGGTTGCTTGAGCTTCTTTCTGTTCCCTCTC
ATAAGCAAAGGATTTTTGAAGTAGcacttcaatttcaacaagtttttctg
tagttttaagattttgaaatcttttcagtttctttctttttcgcaTTAAA
ATCCGCCTGTCTCTTGTGAAGATTGAATCAGAGTTATTAGTCAGTAAGAA
GTTAATATATTGCCATTAGAATGAGTAGGTTTATGGATCATCTGGTTCAA
GTTTAAAATTGAAGTAAAATTGTTTAAACATCTAGAAGTTGTTTGTTGCA
GCTAATTGATGGTATGTAAGAGTCATTTTTTTATGGTGTGGGGTATATTG
AAATCACCACATAGATAAATATCTGGGGTATTTCCTTCGATTGTTTCGAT
GATGTCTTGCATTGCTGAGATAAGGTCCAAGAATTCCGGAGCTGCTGATT
TGTGCAGAATGTGCTGTCTATAAAGGACACCAAGAATAAGGGTAAGGTTT
TTTGAATGAAGTAGTAGAGCTTTATTGActctttctgaaaatttcaagta
ttgGCTCAAACATTGGAGAAACGTCACTTCGAAGATAAAATGCGACACCA
CAAAATGTGGATTTGATGCGATTTCTATCCTTACAAAAAAGCTCATATCC
CTCAATTTCAAGCTCTGCTTTCTTGTGCGAAGATGATAGCTCGGTTAGGC
CCATAAAAATGTGGTTCTCAGAATGAAGAATTGATGCCAGTAGAGGAACT
GATGATTGAGTGGTCTGGGGACATAAACCCTGAatattcataaaagaaaa
agtattcATTGATGTGGTATCCTTTGTTCGTTGTGGTGAAAATTGCTTTG
GTTGAGTGGATAGTCCTGAAGACGGGGGTGAAATTGGTGTATGGGTATTT
CTGATGGAAAGTTTTAGACGGTTGCTGAATATTTCGTACATTCAGATTGG
TAGTGATCATTGATATCATTTCTGTCCGAAAATTGTCTAAGATTTTCAAG
ATTGTTGTGTGTTTGTATGGTTCTTTAGTACTGGGTCCCTTTTAGTCCCC
TTGACATGAGTAAAAGTGCAATTTGTGTTAAAACATCCACCTTTTCTGAT
CGATGAAGAACACATACGTGGATGAAACATGTTGCATTTTGTGCCAGCAT
TACAGCCATTTGGGGATTTATTACCATGTCTTAGTAACTTGGTACAGATT
TTTGGATACTTGAATCGGCAATCTTTACCTGTGATGCCATATTTACATTT
TCCTTTCTTGTAAAAGTTACAAACTGGAGTTTCTTCAGAGACTTTGTCCT
TGGTTGTAATATTATTCGAAGATAAGGTTGTGTCGTTTTGTAAATCGcgt
tgaaatttagattttaggaAATTAGTCCTACCCAGGTATATTCCATCAAC
AATCTTATTCGAGGGTCTGTCGATAATAATATCTGGGGTGATTGGAATGT
GAGGGAGTGTCCTTTTTGGAGTGGGTTGGGTTCCATTTAAGAAAGATTCA
GTGGCTTCAACAGCTTCAGCGATCTGCGTAGGTGAATTCGTTATTTGAGC
TTGTTTTACTTCATCTGTTTCATTTTTGTGAGTAAAATTTATGTTTTCGT
CTCAACATGCCGGGCATAGATAAAAGATGGGATTACATAATTTCTCATGT
TCATTCAAATGATTCATGCTTATCAGAAGTTTAAGATAGCATGGCCGGTG
CACTTCCTGACCACACGCACCACAGCTAATGAGTGGTTTGTCATTGAGTT
TGCATGAATATGATTCTTGACAAATCTGGCATACATCtgggaaaaaattt
ttgatcttCAAACATAATNTCTTGACAAATCTGGCATACAtctgggaaaa
tttttttgaacttCAAACATAATAGGTGGATTGCATCATCCTTGTTAAGG
TTGTTAGATGGTAACGACGATGAAGAGGTTGTGAGATAGTTAAGGGTTTC
AATGATTGGAGATTTGCGACACGATTTAAGTGCTTTGAACTTTTCTTTTG
TTGGAAGTTCAGGGTTGTACATCCGTAAGCAATTTTTGATAACGTCAGTA
GGAGCATTCTCCACAAGACCAGCAAGAGCTCTCTTCCAAGTTTCAACTAA
AAGTCATCAATATTACAGAATTCAGAGGACAGGCtgtactttcattttca
gtgctTTCAtttcgcccatagttacaggtgcttttaagcaaaaaatcaaa
caaagaaaattttcaaatccttcattttgaaaaatacaattaaaaataaa
acttttccatcaTTCACTTTTTCGCACAattctttgaaatgaaaatataa
attcttCTTGTATTGGAGGATTTTTcgctgcactttgttgacaatctaac
tctcgcataaAACTCCTgctttcttcaaaaaattaaagataagaaaaagc
CTAAGCCTTAGGATTACGGATTTGAAACAAATGAAAGATGCGTGACGTAT
AGTAGCAGAAAAGCTCATCGGTGAAAAATAGTCCAAGCCCCAGAGTAATC
AGTACAGAAggtcacttttgtttttatagcagattttgatataaaattcT
CACTTgaattacttgtcaatgtattGTTTCAACTAAAATGTTGctattgt
attgttgtaaaggaaaaaagaaaagaggtAAAGCTATCCTAGCCTCAAAT
CCTAATAGTTTTAGTCTTAAATATCTCAGCTACTCATTTTTTCAAGTTAC
ATGTGTTTTCCNAAAGAGTTTTAGTCTTAACTGTCAGTATGATTTGGTTG
GGACGATTGACTTGTAACTTTTCACATACAAAGCTGTAGGTGTAAGTGGT
ATATTCTGGTATATTATGGTCATTTGACACTTGCAGCTAAGAGAGCAGTT
AGAGTAAAAGGTGGCGTTGTGAGGTCGAACAGGAGGCTAGGATAGCTTTA
CCTTctttgataatgtctgaaaatgagtttgaaattttcaaacaatttcg
cccttagggttttgcctggggagaaaagaaatgtcccaaagaagggatgt
tccaccagtgggattttaggggattttttcctgaggcatgtttatgagaa
ggtctggagaaagtttcagctagatcttatttttttcccgtaaattatgc
taaacgacccccaCTAATAGACTTGATAAGAAATATCTCAGCTactcatt
tttttcaagttACATGTGTTTTCCTTGAgataaagaaaacttcaagggaA
ATTATTCAGAAAAGTTTACATTTTGAGACTTATTGAGGTAGATTTAAAAT
GATTTgttactctcaggtgcctaataaacagACCCCCCCCTTTATTaaag
ttttaagatttttctaatCTGGCTCTCcgtttattaggtacctgaAAGTA
GATGTTGTAGCAGTTGTGAGCAGTTCATCCCAATAATTACCTGGGGGGct
gggtactagggcaaaatgggttacggggatgttCCGCTGGTCAGGTTACC
CTTTTTAACcgccacgagtcccaggtagggtcgcaaaaataccaaaatag
aaaaatcattcCCTCGTAGGCagtcgtagggtgccttttttggaaaattt
ggggaaaaggtggaaaatttgagaaacttttggatttttttcgcaacttt
cggcaaaatttttgaaaaagcgagtcccacgtagggtccatttttcaaac
ctcagcggagcaccctcgtcggtcggcaagggtagccCCCCCGGAATAAT
TATCTGTTTTGGATGCTAAAGACCTccctttttcaaaaaccttccTCGAA
ATGTTAGAGCTCCCCTTCCCCACATATACTCAGTCTCTACGATAATAATG
AATTATTCTCTTTTTCGTTTTAGGCCGGATGATCtgcgaaaaatgttttt
gaagtaTGGAGATATCAGTGATGTGTACGTTCCACTTGATTATTTCACTC
GCGAACCTCGAGGATTCGCTTACGTACAATATCTTTTCAATTAATCTCAA
GCACTTTTCTTCATGCTACTTTTAGTGTATTTTCAAGTTTTCCCCTTTCA
CAAACAATTGGCAAACTGGCTTCTTTCCTTACAATTCTGAAACtttattt
caatcaattttgtAGAATCTAACAAAGACAAAGACAAAGTAAAGAtttgt
ttaatttcaaaagAAAGATTTCGAGACAACAAAAGCTAAAGTAAAGACAA
AGATAAAGGCTTTTAAAGACAAACTTTCCTGAAAAAGACAAAGCAAAGAC
AAAAGAAccaaaagtttaatttttcaaagacaaaGACAAAACCTTTAGCC
AAAGCCAGCTCTCGAAAGAAAACACAATACAGACGAAGGAATGTTTAAGG
CAAAGACAAAGACAAAGCTAAAGCCAAAAATGGACACCAAATGTTCAAgt
caaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013081-exon-sc0000162-1491911889:147255..147436 | TCONS_00013081-exon-sc0000162-1491911889:147255..147436 | Clytia hemisphaerica | exon |
| TCONS_00013081-exon-sc0000162-1510915933:147255..147436 | TCONS_00013081-exon-sc0000162-1510915933:147255..147436 | Clytia hemisphaerica | exon |
| TCONS_00013081-exon-sc0000162-1575043694:147255..147436 | TCONS_00013081-exon-sc0000162-1575043694:147255..147436 | Clytia hemisphaerica | exon |
| TCONS_00013081-exon-sc0000162-1491911889:156628..156678 | TCONS_00013081-exon-sc0000162-1491911889:156628..156678 | Clytia hemisphaerica | exon |
| TCONS_00013081-exon-sc0000162-1510915933:156628..156678 | TCONS_00013081-exon-sc0000162-1510915933:156628..156678 | Clytia hemisphaerica | exon |
| TCONS_00013081-exon-sc0000162-1575043694:156628..156678 | TCONS_00013081-exon-sc0000162-1575043694:156628..156678 | Clytia hemisphaerica | exon |
| TCONS_00013081-exon-sc0000162-1491911889:156870..157160 | TCONS_00013081-exon-sc0000162-1491911889:156870..157160 | Clytia hemisphaerica | exon |
| TCONS_00013081-exon-sc0000162-1510915933:156870..157160 | TCONS_00013081-exon-sc0000162-1510915933:156870..157160 | Clytia hemisphaerica | exon |
| TCONS_00013081-exon-sc0000162-1575043694:156870..157160 | TCONS_00013081-exon-sc0000162-1575043694:156870..157160 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000162 | supercontig | sc0000162:147255..157160 + |
Blast
The following BLAST results are available for this feature:
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