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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013005 ID=TCONS_00013005|Name=TCONS_00013005|organism=Clytia hemisphaerica|type=transcript|length=3052bpRun BLAST on NCBI protein sequence of TCONS_00013005-protein >TCONS_00013005-protein ID=TCONS_00013005-protein|Name=TCONS_00013005-protein|organism=Clytia hemisphaerica|type=polypeptide|length=725bp MLHCSVPLAKQNVKTVIRRAVKSATGLRFNSTDQKPQKMEVFVDGKRVLVRun BLAST on NCBI transcript from alignment at sc0000161:251159..277834- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00013005 ID=TCONS_00013005|Name=TCONS_00013005|organism=Clytia hemisphaerica|type=transcript|length=26676bp|location=Sequence derived from alignment at sc0000161:251159..277834- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000161:251159..277834- >TCONS_00013005 ID=TCONS_00013005|Name=TCONS_00013005|organism=Clytia hemisphaerica|type=CDS|length=45738bp|location=Sequence derived from alignment at sc0000161:251159..277834- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00013005 vs. Swiss-Prot (Human)
Match: NDUS1 (NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial OS=Homo sapiens GN=NDUFS1 PE=1 SV=3) HSP 1 Score: 993.03 bits (2566), Expect = 0.000e+0 Identity = 468/713 (65.64%), Postives = 567/713 (79.52%), Query Frame = 1
Query: 253 IRRAV----KSATGLRFNSTDQKPQKMEVFVDGKRVLVDPGTTVMQAAAMVGSEIPRFCYHDRLSVAGNCRMCLVEVEKSPKPVAACAMPVMNGWSIKTDSPLTRKAREGVMEFILVNHPLDCPICDQGGECDLQDQSMAFGNDRSRFVDVKFEGKAAFEDKNIGPLVKTIMTRCIQCTRCVRFGNEVAGVEDLGTTGRGSDMQIGTYVEKMFKSELSGNIIDLCPVGALTSKPYAFTARPWELRKVESVDVMDAVGSNIVVGTRGGEIMRILPRINEDINEEWISDKTRFAYDGLKRQRLNTPYIRGQDGNLQPCGWEDALVATAGELHACAPGDMAVVAGNFVDAETLVATKDLFNRIGCENLYTEEGFPNAGAGTDLRSNYLFNSTIAGIEEADALLIVGACPRYEAPLVNARIRKAWIHNELDVALVGKETDLTYSYDHLGEEASVLQDIAAGKHPYSKVLAEAKRPVIIVGSNPLSTAEGESLMAICSQISNGLKSKGSVEKDWKVLNVLHKVASQVAALDVGYKTGVENL--GSPKLLYLLGADSGKISRANLPKDCIVVYQGSHGDQGASMADIILPGAAYTEKAATYVNMEGRAQETRRALTPPGLGRDDWKIIRAISEISGNALPYDSLAEIRQRLTDVCPNLTRYGNVESANFFSQAASLYQ--GTRTSKGTLEPHISNLQDFYMTDSISKASQTMAKCVQAV 2367
+R+A+ KS G + +EVFVDG+ V+V+PGTTV+QA VG +IPRFCYH+RLSVAGNCRMCLVE+EK+PK VAACAMPVM GW+I T+S ++KAREGVMEF+L NHPLDCPICDQGGECDLQDQSM FGNDRSRF EGK A EDKNIGPLVKTIMTRCIQCTRC+RF +E+AGV+DLGTTGRG+DMQ+GTY+EKMF SELSGNIID+CPVGALTSKPYAFTARPWE RK ES+DVMDAVGSNIVV TR GE+MRILPR++EDINEEWISDKTRFAYDGLKRQRL P +R + G L WEDAL AG L + D+A +AG VDAE LVA KDL NR+ + L TEE FP AGAGTDLRSNYL N+TIAG+EEAD +L+VG PR+EAPL NARIRK+W+HN+L VAL+G DLTY+YDHLG+ +LQDIA+G HP+S+VL EAK+P++++GS+ L +G +++A S I+ ++ V DWKV+N+LH++ASQVAALD+GYK GVE + PK+L+LLGAD G I+R +LPKDC ++YQG HGD GA +AD+ILPGAAYTEK+ATYVN EGRAQ+T+ A+TPPGL R+DWKIIRA+SEI+G LPYD+L ++R RL +V PNL RY ++E AN+F QA L + + L P ++DFYMTDSIS+ASQTMAKCV+AV
Sbjct: 6 VRKALVGLSKSPKGCVRTTATAASNLIEVFVDGQSVMVEPGTTVLQACEKVGMQIPRFCYHERLSVAGNCRMCLVEIEKAPKVVAACAMPVMKGWNILTNSEKSKKAREGVMEFLLANHPLDCPICDQGGECDLQDQSMMFGNDRSRF----LEGKRAVEDKNIGPLVKTIMTRCIQCTRCIRFASEIAGVDDLGTTGRGNDMQVGTYIEKMFMSELSGNIIDICPVGALTSKPYAFTARPWETRKTESIDVMDAVGSNIVVSTRTGEVMRILPRMHEDINEEWISDKTRFAYDGLKRQRLTEPMVRNEKGLLTYTSWEDALSRVAGMLQSFQGKDVAAIAGGLVDAEALVALKDLLNRVDSDTLCTEEVFPTAGAGTDLRSNYLLNTTIAGVEEADVVLLVGTNPRFEAPLFNARIRKSWLHNDLKVALIGSPVDLTYTYDHLGDSPKILQDIASGSHPFSQVLKEAKKPMVVLGSSALQRNDGAAILAAVSSIAQKIRMTSGVTGDWKVMNILHRIASQVAALDLGYKPGVEAIRKNPPKVLFLLGADGGCITRQDLPKDCFIIYQGHHGDVGAPIADVILPGAAYTEKSATYVNTEGRAQQTKVAVTPPGLAREDWKIIRALSEIAGMTLPYDTLDQVRNRLEEVSPNLVRYDDIEGANYFQQANELSKLVNQQLLADPLVPPQLTIKDFYMTDSISRASQTMAKCVKAV 714 The following BLAST results are available for this feature:
BLAST of TCONS_00013005 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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