TCONS_00013002 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00013002
Unique Name	TCONS_00013002
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1060

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000161:118481..123712-

transcript sequence

>TCONS_00013002 ID=TCONS_00013002|Name=TCONS_00013002|organism=Clytia hemisphaerica|type=transcript|length=1060bp
GTTTTGTTCTTAATCATATCATTATATCTTCGTAGACTTCGTAGGATATt
caaaaaaaacgtaaacaacTATATACAAGATGGGTAATTGTTTGTTTTCT
TTGGGTTCATGGTTGATAGACACATTAGGTTTTGGAGTCAAACGAAGCAA
AGTTCCCACAGATGACGAAGATGATGATCATATCGATCGAGATGAGATTG
TTATCACCAAAATTGAAGAAATGGAAGCATACTGCAAACCATTAATTTTC
TTGCGATTCTGCGGGCAGACAAGTAGTGCAACTGACACGGATACTAATGC
AGAAAAAGGCCCTCAAAATACCGGATCCTACCTCCAAATGTTGGATGCTT
TGATTCGAACCCTCCCTAAAGATGAACTTAAAGAAGGATTCTGTCAAACC
AAAGCTTTCCAAGGTTTATTATGGAAGATTGCTGATCGAAGACATCGAGA
TGAAGAATCTGAGCAGAGATGTTATAGGAGATTGCTAAGAGATTCCAAAC
GATTTGAAAAAGTCTTCCTTGAACGTGCAGccAAGAAAGCAGAAAATCAA
GAAGAGCCTTATTCAGAAGAACTACACGAACAACATGCTGAATACTGGGG
CACGCGGCAACAATTATTGGCTGGTAAAGTCATCTGTGATTGGCTCTCAG
AGGACGATCAACCATCTATGGACCCTATCTACGGCGTCTTATTAAATCCA
ACTGCCGGCCGCGTTGGGCCAGGTGATTCTGGTTTTGTCCATAGTTTATT
ATACGATAATTCCGGTGAATGGGCTCATCATTCGGCTGTTCACGATGCTT
TTGgttatttgtttacatttcatCAACTTGGGCCGGGGTACAATTATATG
TATCGATCGTTTTTCGACGCAGATAATCCATTGGCTGGACAAATCTCTGG
tattgatttttggaaaaaatatgtgGCTGAAGTTGAAACCAAACTTAAAG
TCATTGAAAATTTCCGctcagtttgaaaaaacaaaattttgtagaTAGAC
TTTCTTTGTATcattatttgttaaaaaaacataattgaatttgtgtaaat
ataaACGCAG

Run BLAST on NCBI

transcript from alignment at sc0000161:118481..123712-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00013002 ID=TCONS_00013002|Name=TCONS_00013002|organism=Clytia hemisphaerica|type=transcript|length=5232bp|location=Sequence derived from alignment at sc0000161:118481..123712- (Clytia hemisphaerica)
GTTTTGTTCTTAATCATATCATTATATCTTCGTAGACTTCGTAGGATATT
CAAAAAAAACGTAAACAACTATATACAAGATGGGTAATTGTTTGTTTTCT
TTGGGTTCATGGTTGATAGACACATTAGGTTTTGGAGTCAAACGAAGCAA
AGTTCCCACAGATGACGAAGATGATGATCATATCGATCGAGATGAGATTG
TTATCACCAAAATTGAAGAAATGGAAGCATACTGCAAACCATTAATTTTC
TTGCGATTCTGCGGGCAGACAAGTAGTGCAACTGTAAGTACTGATTGATG
ATAACAAACTTGAACCCAGTCCCTTATTTCGTTCGTTTTTTAGATTGTAG
CACTTCCATCAGTATAATCTAAAAGTTGTGGCTCTGAGTACGAGATTGTG
ATCTTTATACTCTGGATGTAATCACCCCTCACCCCGTTTTTTTTGTATAC
CTATATCTTAGTTCCAATGACCCCCGATGATCCCTCTCAATTTCTTACAT
CCCTGTCTCAGTTTTTTGGTGTAATCTTATTAGCTTTCTCCTATTTTTGT
ACCCCTATCCCAGGTTCCTATTCATTTTCAATTCTTTTTGAAAATTAAAT
ATTATTGTTCTTACAATCTAGGACACGGATACTAATGCAGAAAAAGGCCC
TCAAAATACCGGATCCTACCTCCAAATGTTGGATGCTTTGATTCGAACCC
TCCCTAAAGATGAACTTAAAGAAGGATTCTGTCAAACCAAAGCTTTCCAA
GGTTTATTATGGAAGATTGCTGATCGAAGACATCGAGATGAAGAATCTGA
GCAGAGATGTTATAGGAGATTGCTAAGAGATTCCAAACGATTTGAAAAAG
TCTTCCTTGAACGTGCAGGTATGAAATCAAATCAGTAGCGTGATGGCATG
CCAGGGGGGAGGGGTACCCCTTTGCTTTTTTAAACCTTAAAATTAGCAGT
TTCAGTCAAAAAGAGAAAAAAAAACAAAAATTGTCGTTTCGTCTAAAGAT
TTAACTTTGCAAAGGGGAGCAAAAAAACAAAAACGAAAATTTCCTCTCCA
GATTTGGTCGACCCATAAGGAACACTATGATCAAATGTCCCATTTCGGAC
AATGATATTGATGCATTCTACCCAATCAACGGATTAGAATAGGTGGATTA
AGAACTCATAGAAAACACTCCTCGTTAGGTTATCAAACTTTTTTACGAGT
TTGCTAGCAATTAAAACTTGATAAGTTGTANNNNNNNNNNNNNNNNNNNN
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CAATTTCCGTAATTCCGTCTAAATTTTCGCCAAATTCCGCCACTCCGTCC
GAAAAAAGGGCCGATTCCGCTCCTCCGCCAACCATGAAACCCCCCCAAAA
AACAATTCCCATTTCCATCTTACACCTCCTAAATGTTAAGAACCGTACCC
AACCCAGGTTTTTAAATCTGATCGAAATTCGTTATCAATTTTTTATATTT
AGCCAAGAAAGCAGAAAATCAAGAAGAGCCTTATTCAGAAGAACTACACG
AACAACATGCTGAATACTGGGGCACGCGGCAACAATTATTGGCTGGTAAA
GTCATCTGTGATTGGCTCTCAGAGGACGATCAACCATCTATGGACCCTAT
CTACGGCGTCTTATTAAATCCAACTGCCGGCCGCGTTGGGCCAGGTGATT
CTGGTTTTGTCCATAGTTTATTATACGATAATTCCGGTGAATGGGCTCAT
CATTCGGCTGTTCACGATGCTTTTGGTTATTTGTTTACATTTCATCAACT
TGGGCCGGGGTACAATTATATGTATCGATCGTTTTTCGACGCAGATAATC
CATTGGCTGGACAAATCTCTGGTATTGATTTTTGGAAAAAATATGTGGCT
GAAGTTGAAACCAAACTTAAAGTCATTGAAAATTTCCGCTCAGTTTGAAA
AAACAAAATTTTGTAGATAGACTTTCTTTGTATCATTATTTGTTAAAAAA
ACATAATTGAATTTGTGTAAATATAAACGCAG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_007288	XLOC_007288	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00013002-exon-sc0000161-1575043694:123430..123712	TCONS_00013002-exon-sc0000161-1575043694:123430..123712	Clytia hemisphaerica	exon
TCONS_00013002-exon-sc0000161-1575043694:122845..123091	TCONS_00013002-exon-sc0000161-1575043694:122845..123091	Clytia hemisphaerica	exon
TCONS_00013002-exon-sc0000161-1575043694:118481..119010	TCONS_00013002-exon-sc0000161-1575043694:118481..119010	Clytia hemisphaerica	exon
TCONS_00013002-exon-sc0000161-1510915933:123430..123712	TCONS_00013002-exon-sc0000161-1510915933:123430..123712	Clytia hemisphaerica	exon
TCONS_00013002-exon-sc0000161-1510915933:122845..123091	TCONS_00013002-exon-sc0000161-1510915933:122845..123091	Clytia hemisphaerica	exon
TCONS_00013002-exon-sc0000161-1510915933:118481..119010	TCONS_00013002-exon-sc0000161-1510915933:118481..119010	Clytia hemisphaerica	exon
TCONS_00013002-exon-sc0000161-1491911889:123430..123712	TCONS_00013002-exon-sc0000161-1491911889:123430..123712	Clytia hemisphaerica	exon
TCONS_00013002-exon-sc0000161-1491911889:122845..123091	TCONS_00013002-exon-sc0000161-1491911889:122845..123091	Clytia hemisphaerica	exon
TCONS_00013002-exon-sc0000161-1491911889:118481..119010	TCONS_00013002-exon-sc0000161-1491911889:118481..119010	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000161	supercontig	sc0000161:118481..123712 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
190.795	219.867	245.56	257.802	44.5819	33.0254	81.259	77.6635	72.8014	109.985	72.9902	65.1655	24.0633	13.9022	67.6383	75.5464	57.7723	45.9746	35.8942	46.423	14.156	14.6604	67.0309	63.4247	16.8152	15.0578	46.8802	22.9964	20.8525	18.8926

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00013002 vs. Swiss-Prot (Human)

BLAST of TCONS_00013002 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00013002 (transcript) - C. hemisphaerica