TCONS_00012957 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00012957
Unique Name	TCONS_00012957
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2371

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000161:186190..190773+
coding sequence from alignment at sc0000161:186190..190773+

transcript sequence

>TCONS_00012957 ID=TCONS_00012957|Name=TCONS_00012957|organism=Clytia hemisphaerica|type=transcript|length=2371bp
gtttacagtgacaaaaaaacaagaaaaataaaaacatcaatgGAAGATGA
CAaaacgaagttcttcatcaactTCATTGGTCTCCAAAGATGACTCTGGT
AAACCCAAGAAGTCACGccaaacaaatattTCGGATGTACAGAAATTTCC
TTTCAAAAATCCTGAGTTTCAGCATTCAGGAACGGTAAAGTCAGGCAAAA
AGAAAGGATGGAAAGGTTTGAAACAAATTTCATCTTCAGAAAGATCACAA
GCTCCTGTCGACGCCCCAACTTATATGAATATTGAATCGCCACCACCATT
AAAACCTGTCCGTAAATATTCCGATATTTCAGGGCAGCTGGCGAAATACA
CGGACCCGGAGACCGGTCTTTATTACAGCAGTACAGAAGAGTATAAACAA
ATCAAAAGATTACCAACTGATATCGTTCAAGGATACCTAACACTGAGAAA
TGCATCTACTAAATGAAAATGTAAACGTCATTGGTTTAGTGGTTAATCTT
GGTGCAGTTTTTTaatgcagagaaaatttgaGTCGCAACCCAAAGATGTA
CTTAATTATAAACAcatgaagaaaatgaaagtttgGTTTTGGTTACGTTA
TTTTGATatacaaaaagattttcaacaGCCAAACACTACAGAGATTTCTT
TAGATTAAATCGATgatattcaaaataaaagtaCATGGGAATAATAAAAA
GAGAAGTTACAAATCCACAAATCCGAGAAACCGTGACAATAAAAAAAGTC
TTGGATTTGATTATGGAGGATTTGTACAAACCTACCAATTTAATGTTGTT
AGTATATGATATCTTTATCCAACCCGTTATTCAATTTAGTGGATTATTTT
TGTAATGAAGTACTTGCAAGTTTATGATCTAGACATATATTAATATCatc
atggaggtaataagaaatagatggagaataaATGACTCGGTAATGGTCAA
AGTGATTGTcaaattcttttatattttcattcaaatcggttttctttgat
ttactatcattggaagcaaaaaaatccgaaatgtaaatttataagaacag
aagtgaggatgttatcctgattgaaaCAAACAtattatgcaaaaagttct
tgctcaaacgcgatacaaaaataattttctcgaagtaaggttacaatagt
tttatgatttcatatcgatgtatttttgggcaaacactttgctaattttg
agagtttcagcacattttccttgaaaatttcttcattagaaatctttaca
tctaaaagggagggggctttcaaattctgatAGATGATTAATCaaaggtt
acctaatcgtaatatataaaaaaacgtaatatataaaaaaacgtataatt
ataaaaatattagtgtctttttatgtttcatctttattttatttagtatt
ttcaacactttctctccttgaggtcagatctctgatcttcaccatatata
ttttttaaatctatcgatgattttatgagagaggggacccttagaaatat
aggattttgtgcttgttccggcaagctttttctcattttgatcaacaaag
ctattatctcacaatagagctgttaaaaatccaacatctttttattcagc
tttttatgaacttaaatattcccatAAGTGCACACAAAATTAATCACTGT
TTCCCATTGCAACCAAGGAgccgtttgcttccgatgataaggtacaatga
aacaaaatgagttaattctccatctatttcttattacctcAATGATATCA
TGGATTGGAAGAAAATTGGAATAACACTACGGTGATTGTCTCCCGCTAAA
TTCGAACTTCTACTATTTGAATCTTCAAAAACCTCCTTAACTCTTCTCAA
CCCACATCAAATAGAAACACttgtaaaatactttttttagcTCAATTGTT
TTAGATCTACTATTCAGGTTTCAATTAGCGtaaataccgtattacttcga
ataaacacctaccaatttttattagattttagGAAGTTTATTATTTTAGG
AAGGGCGTTTATTGGAAGGGGCGTTTAAAAGTGTGGGGCCTTTGTTGAAT
ATCTTTAACCAAAGTCACTTCAATAAACTGAATGGGGATCTTGTTTTACA
GCTATTTGTTTTAAATAAGCACCCCTCCAAGTGGGGAGGCGTTTTTTTGA
GGTGgcgtttattgaaaattttcctttagACCTTCCCCTCCCTCCGTTTA
TACGGTAATCAGTTTGAATCTTTTATATGAAGTTTCTGTTatcaactttt
ttgtaaataaacgGCAGGTTATCTGTACGTATTACTCAACAGTTGCTCAT
ATATCTTATTTGAACACGTGACCTAAAAGAGAGTGAACATTGAAATGTCA
AAGAATGATAGGAATTTGCAT

Run BLAST on NCBI

protein sequence of TCONS_00012957-protein

>TCONS_00012957-protein ID=TCONS_00012957-protein|Name=TCONS_00012957-protein|organism=Clytia hemisphaerica|type=polypeptide|length=139bp
MTKRSSSSTSLVSKDDSGKPKKSRQTNISDVQKFPFKNPEFQHSGTVKSG
KKKGWKGLKQISSSERSQAPVDAPTYMNIESPPPLKPVRKYSDISGQLAK
YTDPETGLYYSSTEEYKQIKRLPTDIVQGYLTLRNASTK

Run BLAST on NCBI

transcript from alignment at sc0000161:186190..190773+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00012957 ID=TCONS_00012957|Name=TCONS_00012957|organism=Clytia hemisphaerica|type=transcript|length=4584bp|location=Sequence derived from alignment at sc0000161:186190..190773+ (Clytia hemisphaerica)
gtttacagtgacaaaaaaacaagaaaaataaaaacatcaatgGAAGATGA
CAaaacgaagttcttcatcaactTCATTGGTCTCCAAAGATGACTCTGGT
AAACCCAAGAAGTCACGcgtaagttttcttttcaagctTAATCCTCCATT
CTATCATAGACTTGGGTCTGCTCCATTTTCTAACATCATAGATTTGTACG
GGTGATGAGAAAttagaaaatgagaaaattctCACAGTTTTTGTGGATGA
TGGAAAGCCCTTTAATAAgcaaatgggctcttccagaaaaaatttgtata
tagggggggggggggggaaaaaaaaaaccctttaaaaaaaaaatgggctt
ttccagaaaaaatttgtatatagggggggggggggggaaaaaaaaaaccc
tttaaaaaaaaaatgggcttttccagaaaaaatttgaatatgaggggggg
gggtagcggatataacaattttcagtgatttaacCCTCAGAGAAAGTGAC
TTTCGGCCCCCCGGACAACGgattttacccccggacaacccaaattacct
ccggacagagcaaatttattcccagacaaggcaaattttgatgatttttg
atacccccggacaatatatcctccacccgggGTGTACGAACATTCCACTA
CCTTTGATCGGAGTGTTTTGGAAAATGGCACCGACAGCGATAGCACTACT
CGATGTTGTTCAATTCCTATTTCACTGCAATTTTCTAACATACATAAGTA
GTAGTATCGAAAAACTACCGCGAATTCCTCCATGGTTTATATAAAGCTGG
GTGGGTTGTCGTTTAGTCGAAGGCTAAAGCATGCAAGTTTTCCCAAGGAT
ACACTTATACTGAAAGATTTGACAGTAATAAACTTTGGTCTTTATTtttt
agcaaacaaatattTCGGATGTACAGAAATTTCCTTTCAAAAATCCTGAG
TTTCAGGTATTTTAACGtcattaattaatttttatgCTAAGCTTGCATCT
AGATATATATTTGTCATTGGCCCCAAAACATTTTGATTTGACAAGtttaa
ctttaattttgatattGTCAAACGTGTCAAAATCGAATTCGGATTTTAAT
TTTACCATTTAAATTTTCGCATCACCAAATTACTATGCGTTAGTGGGCTA
TTCAAGAAACGAATTTTATCAATACTGACCTTGTGTCCAGGTTTCTATGA
AAACCTCCCTAGGAAATCTGTTATTCACAACATGCCTGGAGATATACCTC
CAAATTTCAGTTGATAACTCAGCCAGTCAAATTTTGCTAttctttcactg
gtcacactttcttagaaaaaaagtcAACTTTCTAAAGTCTTTTTTCATCA
CTGAAAGTGAGGACAGCAgtgtatttgaaattttcaattgcaGTTTAATT
GTATCCAATTTTTCAGCATTCAGGAACGGTAAAGTCAGGCAAAAAGAAAG
GATGGAAAGGTTTGAAACAAATTTCATCTTCAGAAAGATCACAAGCTCCT
GTCGACGCCCCAACTTGTGAGTTTACCTTTCTATTAGTGTACAGTGGAGT
catcataactcgaacacgcacggggaacacaaatttgttcgagttgagaa
aatttcgagttatggaataaggtttgttaactgaaggggccaaaaaattg
ttcgagttgagaaaatttcgagttatggaataaggtttgttaactgaagg
ggccaaaaaattgttcgagttaaggagctTTTCCATTGATATTGCAAGAT
CAGCAATCAGCTTCATATATGTATAGATTGGCTTTAACTGCTAAATCTAC
ATTGCTGGCTATTATGTTTTGATACTCCAACAACTCCAAACTCCCCTTCA
AACTTTAGAATAATGATCCCATACAAAATGTTGAGAATTGCACTCTGAGC
TGCTGTGGAACCTTTTTGGTTCTATCTTACATTGATTCTGTGTGTATCGT
AACATTGTACGGCGTTTTGAgactaaaatgtttttttctgttttctttcc
AGATATGAATATTGAATCGCCACCACCATTAAAACCTGTCCGTAAATATT
CCGATATTTCAGGGCAGCTGGTAAGAATTTCATCTAATAATTAAAACATA
CTATAACAGACATGGGACTAAAATAGAAAACTTTTCTTTACCAGGATTTC
TATTTTGCctctttaaaggttttaagAAAGGAACCTCTTATGCTGACGAA
GTAGAattaacaatagaatttctcaaCATTTTAACAGGCGCAGCGCAGGA
GAGGGAAGTTGTTTGTTCTCTTGTTTAACCCTTCGAtcatatttctattt
ttttactgGGGTAGCATATTGGGTGGGGtctcaagattgacaagtgctat
AACCTTGAAATTATGACCAGTGGTAGATATGGATAATTGAAGATGATTTG
CTTACCTAGGTCAGTGACTGCAAGAGGATCATTAACCTCGTTCTTTGCGT
ATTAACGGCTTTTTGATACCTACTGATAGGGCCTATGGCGTCCATCAATA
ACGTGAATAAAGCTTAAGATACACTGGGACGAGGTTGCAATTTCAAATTT
CAGGCGAAATACACGGACCCGGAGACCGGTCTTTATTACAGCAGTACAGA
AGAGTATAAACAAATCAAAAGATTACCAACTGATATCGTTCAAGGATACC
TAACACTGAGAAATGCATCTACTAAATGAAAATGTAAACGTCATTGGTTT
AGTGGTTAATCTTGGTGCAGTTTTTTaatgcagagaaaatttgaGTCGCA
ACCCAAAGATGTACTTAATTATAAACAcatgaagaaaatgaaagtttgGT
TTTGGTTACGTTATTTTGATatacaaaaagattttcaacaGCCAAACACT
ACAGAGATTTCTTTAGATTAAATCGATgatattcaaaataaaagtaCATG
GGAATAATAAAAAGAGAAGTTACAAATCCACAAATCCGAGAAACCGTGAC
AATAAAAAAAGTCTTGGATTTGATTATGGAGGATTTGTACAAACCTACCA
ATTTAATGTTGTTAGTATATGATATCTTTATCCAACCCGTTATTCAATTT
AGTGGATTATTTTTGTAATGAAGTACTTGCAAGTTTATGATCTAGACATA
TATTAATATCatcatggaggtaataagaaatagatggagaataaATGACT
CGGTAATGGTCAAAGTGATTGTcaaattcttttatattttcattcaaatc
ggttttctttgatttactatcattggaagcaaaaaaatccgaaatgtaaa
tttataagaacagaagtgaggatgttatcctgattgaaaCAAACAtatta
tgcaaaaagttcttgctcaaacgcgatacaaaaataattttctcgaagta
aggttacaatagttttatgatttcatatcgatgtatttttgggcaaacac
tttgctaattttgagagtttcagcacattttccttgaaaatttcttcatt
agaaatctttacatctaaaagggagggggctttcaaattctgatAGATGA
TTAATCaaaggttacctaatcgtaatatataaaaaaacgtaatatataaa
aaaacgtataattataaaaatattagtgtctttttatgtttcatctttat
tttatttagtattttcaacactttctctccttgaggtcagatctctgatc
ttcaccatatatattttttaaatctatcgatgattttatgagagagggga
cccttagaaatataggattttgtgcttgttccggcaagctttttctcatt
ttgatcaacaaagctattatctcacaatagagctgttaaaaatccaacat
ctttttattcagctttttatgaacttaaatattcccatAAGTGCACACAA
AATTAATCACTGTTTCCCATTGCAACCAAGGAgccgtttgcttccgatga
taaggtacaatgaaacaaaatgagttaattctccatctatttcttattac
ctcAATGATATCATGGATTGGAAGAAAATTGGAATAACACTACGGTGATT
GTCTCCCGCTAAATTCGAACTTCTACTATTTGAATCTTCAAAAACCTCCT
TAACTCTTCTCAACCCACATCAAATAGAAACACttgtaaaatactttttt
tagcTCAATTGTTTTAGATCTACTATTCAGGTTTCAATTAGCGtaaatac
cgtattacttcgaataaacacctaccaatttttattagattttagGAAGT
TTATTATTTTAGGAAGGGCGTTTATTGGAAGGGGCGTTTAAAAGTGTGGG
GCCTTTGTTGAATATCTTTAACCAAAGTCACTTCAATAAACTGAATGGGG
ATCTTGTTTTACAGCTATTTGTTTTAAATAAGCACCCCTCCAAGTGGGGA
GGCGTTTTTTTGAGGTGgcgtttattgaaaattttcctttagACCTTCCC
CTCCCTCCGTTTATACGGTAATCAGTTTGAATCTTTTATATGAAGTTTCT
GTTatcaacttttttgtaaataaacgGCAGGTTATCTGTACGTATTACTC
AACAGTTGCTCATATATCTTATTTGAACACGTGACCTAAAAGAGAGTGAA
CATTGAAATGTCAAAGAATGATAGGAATTTGCAT

Coding sequence (CDS) from alignment at sc0000161:186190..190773+

>TCONS_00012957 ID=TCONS_00012957|Name=TCONS_00012957|organism=Clytia hemisphaerica|type=CDS|length=2100bp|location=Sequence derived from alignment at sc0000161:186190..190773+ (Clytia hemisphaerica)
ATGACAaaacgaagttcttcatcaactTCATTGGTCTCCAAAGATGACTC
TGGTAAACCCAAGAAGTCACGccaaacaaatattTCGGATGTACAGAAAT
TTCCTTTCAAAAATCCTGAGTTTCAGCATTCAGGAACGGTAAAGTCAGGC
AAAAAGAAAGGATGGAAAGGTTTGAAACAAATTTCATCTTCAGAAAGATC
ACAAGCTCCTGTCGACGCCCCAACTTATATGAATATTGAATCGCCACCAC
CATTAAAACCTGTCCGTAAATATTCCGATATTTCAGGGCAGCTGGCGAAA
TACACGGACCCGGAGACCGGTCTTTATTACAGCAGTACAGAAGAGTATAA
ACAAATCAAAAGATTACCAACTGATATCGTTCAAGGATACCTAACACTGA
GAAATGCATCTACTAAATGAATGACAaaacgaagttcttcatcaactTCA
TTGGTCTCCAAAGATGACTCTGGTAAACCCAAGAAGTCACGccaaacaaa
tattTCGGATGTACAGAAATTTCCTTTCAAAAATCCTGAGTTTCAGCATT
CAGGAACGGTAAAGTCAGGCAAAAAGAAAGGATGGAAAGGTTTGAAACAA
ATTTCATCTTCAGAAAGATCACAAGCTCCTGTCGACGCCCCAACTTATAT
GAATATTGAATCGCCACCACCATTAAAACCTGTCCGTAAATATTCCGATA
TTTCAGGGCAGCTGGCGAAATACACGGACCCGGAGACCGGTCTTTATTAC
AGCAGTACAGAAGAGTATAAACAAATCAAAAGATTACCAACTGATATCGT
TCAAGGATACCTAACACTGAGAAATGCATCTACTAAATGAATGACAaaac
gaagttcttcatcaactTCATTGGTCTCCAAAGATGACTCTGGTAAACCC
AAGAAGTCACGccaaacaaatattTCGGATGTACAGAAATTTCCTTTCAA
AAATCCTGAGTTTCAGCATTCAGGAACGGTAAAGTCAGGCAAAAAGAAAG
GATGGAAAGGTTTGAAACAAATTTCATCTTCAGAAAGATCACAAGCTCCT
GTCGACGCCCCAACTTATATGAATATTGAATCGCCACCACCATTAAAACC
TGTCCGTAAATATTCCGATATTTCAGGGCAGCTGGCGAAATACACGGACC
CGGAGACCGGTCTTTATTACAGCAGTACAGAAGAGTATAAACAAATCAAA
AGATTACCAACTGATATCGTTCAAGGATACCTAACACTGAGAAATGCATC
TACTAAATGAATGACAaaacgaagttcttcatcaactTCATTGGTCTCCA
AAGATGACTCTGGTAAACCCAAGAAGTCACGccaaacaaatattTCGGAT
GTACAGAAATTTCCTTTCAAAAATCCTGAGTTTCAGCATTCAGGAACGGT
AAAGTCAGGCAAAAAGAAAGGATGGAAAGGTTTGAAACAAATTTCATCTT
CAGAAAGATCACAAGCTCCTGTCGACGCCCCAACTTATATGAATATTGAA
TCGCCACCACCATTAAAACCTGTCCGTAAATATTCCGATATTTCAGGGCA
GCTGGCGAAATACACGGACCCGGAGACCGGTCTTTATTACAGCAGTACAG
AAGAGTATAAACAAATCAAAAGATTACCAACTGATATCGTTCAAGGATAC
CTAACACTGAGAAATGCATCTACTAAATGAATGACAaaacgaagttcttc
atcaactTCATTGGTCTCCAAAGATGACTCTGGTAAACCCAAGAAGTCAC
GccaaacaaatattTCGGATGTACAGAAATTTCCTTTCAAAAATCCTGAG
TTTCAGCATTCAGGAACGGTAAAGTCAGGCAAAAAGAAAGGATGGAAAGG
TTTGAAACAAATTTCATCTTCAGAAAGATCACAAGCTCCTGTCGACGCCC
CAACTTATATGAATATTGAATCGCCACCACCATTAAAACCTGTCCGTAAA
TATTCCGATATTTCAGGGCAGCTGGCGAAATACACGGACCCGGAGACCGG
TCTTTATTACAGCAGTACAGAAGAGTATAAACAAATCAAAAGATTACCAA
CTGATATCGTTCAAGGATACCTAACACTGAGAAATGCATCTACTAAATGA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_007276	XLOC_007276	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00012957-protein	TCONS_00012957-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000161	supercontig	sc0000161:186190..190773 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
21.4247	21.3081	17.3124	16.508	2.99584	1.51028	3.79097	4.37697	3.33148	2.20988	3.28104	3.03402	2.92813	4.03204	3.95929	4.47097	5.65958	5.43934	2.15922	1.81165	5.74202	5.91029	11.2153	10.1829	7.79936	10.3292	4.21561	3.29463	5.41099	6.79087

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR013272	Vps72/YL1_C

Blast

[Close]

BLAST of TCONS_00012957 vs. Swiss-Prot (Human)
Match: IN80C (INO80 complex subunit C OS=Homo sapiens GN=INO80C PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 5.556e-21
Identity = 54/109 (49.54%), Postives = 75/109 (68.81%), Query Frame = 2

Query:  146 FPFKNPEFQHSX---XXXXXXXXXXXXXXQISSSERSQ-APVDAPTYMNIESPPPLKPVRKYSDISGQLAKYTDPETGLYYSSTEEYKQIKRLPTDIVQGYLTLRNAST 460
             PFK+P F HSG    V   K + WK LKQI +SER+    ++ P Y +I++PP  KP +KYSD+SG LA YTDP++ L +S+ EE+  I+RLP+D+V GYL LR A++
Sbjct:   81 LPFKDPNFVHSGHGGAVAGKKNRTWKNLKQILASERALPWQLNDPNYFSIDAPPSFKPAKKYSDVSGLLANYTDPQSKLRFSTIEEFSYIRRLPSDVVTGYLALRKATS 189

The following BLAST results are available for this feature:

BLAST of TCONS_00012957 vs. Swiss-Prot (Human)

BLAST of TCONS_00012957 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
IN80C	5.556e-21	49.54	INO80 complex subunit C OS=Homo sapiens GN=INO80C ...	[more]

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TCONS_00012957 (transcript) - C. hemisphaerica