TCONS_00012941 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012941
Unique NameTCONS_00012941
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length237

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012941 ID=TCONS_00012941|Name=TCONS_00012941|organism=Clytia hemisphaerica|type=transcript|length=237bp
NNGCTTTATCCGTCAAACAGCCTTTTTTAAAACTAGGAATAATGTCAGCA
AGCTTAAGTCGATCAGGAAAAGTTCCAGATTCCACGCAATTGTTAAAGCA
CGTGGACAAGAATGGTACACAGGTATTTGCAGCAATCTTAAGCATACGAG
TCGGTATTGTCCTGCTTACAGATTTAGAATTGTTTAAGCTCAAAATGACC
TTGAGAACTTCAGTCTCTTCAACCTtagtgaaatcaa
Run BLAST on NCBI

transcript from alignment at sc0000157:503996..504232

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012941 ID=TCONS_00012941|Name=TCONS_00012941|organism=Clytia hemisphaerica|type=transcript|length=237bp|location=Sequence derived from alignment at sc0000157:503996..504232 (Clytia hemisphaerica)
ttgatttcactaAGGTTGAAGAGACTGAAGTTCTCAAGGTCATTTTGAGC
TTAAACAATTCTAAATCTGTAAGCAGGACAATACCGACTCGTATGCTTAA
GATTGCTGCAAATACCTGTGTACCATTCTTGTCCACGTGCTTTAACAATT
GCGTGGAATCTGGAACTTTTCCTGATCGACTTAAGCTTGCTGACATTATT
CCTAGTTTTAAAAAAGGCTGTTTGACGGATAAAGCNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007270XLOC_007270Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012941-exon-sc0000157-1491911889:503996..504232TCONS_00012941-exon-sc0000157-1491911889:503996..504232Clytia hemisphaericaexon
TCONS_00012941-exon-sc0000157-1510915933:503996..504232TCONS_00012941-exon-sc0000157-1510915933:503996..504232Clytia hemisphaericaexon
TCONS_00012941-exon-sc0000157-1575043694:503996..504232TCONS_00012941-exon-sc0000157-1575043694:503996..504232Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000157supercontigsc0000157:503996..504232 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.414334	0	0	0.58112	28.937	18.7463	10.2846	25.0325	0.247071	1.38569	1.62592	1.66614	1.01772	0.162202	0.536004	0.648597	0	1.19211	0	0	0	0.0152051	1.77416	0	0.984853	2.37073	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00012941 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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