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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012939 ID=TCONS_00012939|Name=TCONS_00012939|organism=Clytia hemisphaerica|type=transcript|length=1117bp
ctccgccaaccatgaaacccccccctctGTATTGCATCCATAAGTAATAT
CATTTGTTCCCACGTGTAAAATAAGATAATTTGGTTGCTTTTTTATCAAA
ACGGGCCGAAGGTAGCTAATCATATCTTGCGAGTCTGCACCAGGAAAGTT
TCTCACGATGGACTTGGTTTTTTTGTTGGAGATGCCATTTCCTTCTATGT
TGTTTAAGAGACTATCACCACAAATAATAACTTGCTTACGCGTcgatttt
ttagcattttcctCCTGATGTAGAGCATTTTCTGATCTTAAATTCTCTGA
GATGTGCGACTTTTGTGATGATTGTGTGAATATGTCCATTTTTGGTTTTC
TTAATAAGATGCCACCAACAATactgttttcattttgaatgttttgattt
tccacaTGATGTGTCATTTTGTGAGTCGATTCAGAAATATTAAtctcttt
ttttgataaaaaaagattgTGATTTCTAGATCGTACTTGAGATAATTGAT
CTTTTCCTCTCATGTTTTTAAGAGGGTCATTTTGAGTTGATAGAagactt
ttgtcaaaaggaatatcattaattacttcattaattattttcatgttttc
agaTGTTTCAGAAAAATCAACAGAATCCCTTGTAAAAATCTTTGTTGTTG
AGAGTTGTTTTGATAGAACAGAATTTTGCTCAAGtgccattttcaaattt
tcttgtgCCGTTTTTAGCTCCTCCCTTAGTAATTTAATCACAACATCTTT
GACTTCAAAAGTAGACtggtatttttcaattttattatcGAGCATTCCCA
AAGAGTCTGTCACGTACTTCTTAAAGTCCATAAAGTCTGTGAGAGTGTTT
TCGATACTTTGACTATTTTCTAAAGTCTCAAAAGCTGGAACATCAGCAGA
Caacattgacagattttttacaaacatatcactatgagaattcagtaaag
gatactaaaacacaaattcctgtgtaaatttgaacaagatcagaGAAact
ttcacagtgttataactgaaaatgatattttttggactttgtcatgattt
cattggctggggcgaccgttccttttgaagatttttcaaacccgaaacag
gtttttttcaaacatac Run BLAST on NCBI protein sequence of TCONS_00012939-protein >TCONS_00012939-protein ID=TCONS_00012939-protein|Name=TCONS_00012939-protein|organism=Clytia hemisphaerica|type=polypeptide|length=309bp
MFVKNLSMLSADVPAFETLENSQSIENTLTDFMDFKKYVTDSLGMLDNKI
EKYQSTFEVKDVVIKLLREELKTAQENLKMALEQNSVLSKQLSTTKIFTR
DSVDFSETSENMKIINEVINDIPFDKSLLSTQNDPLKNMRGKDQLSQVRS
RNHNLFLSKKEINISESTHKMTHHVENQNIQNENSIVGGILLRKPKMDIF
TQSSQKSHISENLRSENALHQEENAKKSTRKQVIICGDSLLNNIEGNGIS
NKKTKSIVRNFPGADSQDMISYLRPVLIKKQPNYLILHVGTNDITYGCNT
EGGVSWLAE Run BLAST on NCBI transcript from alignment at sc0000157:501576..502692 Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012939 ID=TCONS_00012939|Name=TCONS_00012939|organism=Clytia hemisphaerica|type=transcript|length=1117bp|location=Sequence derived from alignment at sc0000157:501576..502692 (Clytia hemisphaerica)
gtatgtttgaaaaaaacctgtttcgggtttgaaaaatcttcaaaaggaac
ggtcgccccagccaatgaaatcatgacaaagtccaaaaaatatcattttc
agttataacactgtgaaagtTTCtctgatcttgttcaaatttacacagga
atttgtgttttagtatcctttactgaattctcatagtgatatgtttgtaa
aaaatctgtcaatgttGTCTGCTGATGTTCCAGCTTTTGAGACTTTAGAA
AATAGTCAAAGTATCGAAAACACTCTCACAGACTTTATGGACTTTAAGAA
GTACGTGACAGACTCTTTGGGAATGCTCgataataaaattgaaaaatacc
aGTCTACTTTTGAAGTCAAAGATGTTGTGATTAAATTACTAAGGGAGGAG
CTAAAAACGGcacaagaaaatttgaaaatggcaCTTGAGCAAAATTCTGT
TCTATCAAAACAACTCTCAACAACAAAGATTTTTACAAGGGATTCTGTTG
ATTTTTCTGAAACAtctgaaaacatgaaaataattaatgaagtaattaat
gatattccttttgacaaaagtctTCTATCAACTCAAAATGACCCTCTTAA
AAACATGAGAGGAAAAGATCAATTATCTCAAGTACGATCTAGAAATCAca
atctttttttatcaaaaaaagagaTTAATATTTCTGAATCGACTCACAAA
ATGACACATCAtgtggaaaatcaaaacattcaaaatgaaaacagtATTGT
TGGTGGCATCTTATTAAGAAAACCAAAAATGGACATATTCACACAATCAT
CACAAAAGTCGCACATCTCAGAGAATTTAAGATCAGAAAATGCTCTACAT
CAGGaggaaaatgctaaaaaatcgACGCGTAAGCAAGTTATTATTTGTGG
TGATAGTCTCTTAAACAACATAGAAGGAAATGGCATCTCCAACAAAAAAA
CCAAGTCCATCGTGAGAAACTTTCCTGGTGCAGACTCGCAAGATATGATT
AGCTACCTTCGGCCCGTTTTGATAAAAAAGCAACCAAATTATCTTATTTT
ACACGTGGGAACAAATGATATTACTTATGGATGCAATACagagggggggg
tttcatggttggcggag Coding sequence (CDS) from alignment at sc0000157:501576..502692 >TCONS_00012939 ID=TCONS_00012939|Name=TCONS_00012939|organism=Clytia hemisphaerica|type=CDS|length=927bp|location=Sequence derived from alignment at sc0000157:501576..502692 (Clytia hemisphaerica)
atgtttgtaaaaaatctgtcaatgttGTCTGCTGATGTTCCAGCTTTTGA
GACTTTAGAAAATAGTCAAAGTATCGAAAACACTCTCACAGACTTTATGG
ACTTTAAGAAGTACGTGACAGACTCTTTGGGAATGCTCgataataaaatt
gaaaaataccaGTCTACTTTTGAAGTCAAAGATGTTGTGATTAAATTACT
AAGGGAGGAGCTAAAAACGGcacaagaaaatttgaaaatggcaCTTGAGC
AAAATTCTGTTCTATCAAAACAACTCTCAACAACAAAGATTTTTACAAGG
GATTCTGTTGATTTTTCTGAAACAtctgaaaacatgaaaataattaatga
agtaattaatgatattccttttgacaaaagtctTCTATCAACTCAAAATG
ACCCTCTTAAAAACATGAGAGGAAAAGATCAATTATCTCAAGTACGATCT
AGAAATCAcaatctttttttatcaaaaaaagagaTTAATATTTCTGAATC
GACTCACAAAATGACACATCAtgtggaaaatcaaaacattcaaaatgaaa
acagtATTGTTGGTGGCATCTTATTAAGAAAACCAAAAATGGACATATTC
ACACAATCATCACAAAAGTCGCACATCTCAGAGAATTTAAGATCAGAAAA
TGCTCTACATCAGGaggaaaatgctaaaaaatcgACGCGTAAGCAAGTTA
TTATTTGTGGTGATAGTCTCTTAAACAACATAGAAGGAAATGGCATCTCC
AACAAAAAAACCAAGTCCATCGTGAGAAACTTTCCTGGTGCAGACTCGCA
AGATATGATTAGCTACCTTCGGCCCGTTTTGATAAAAAAGCAACCAAATT
ATCTTATTTTACACGTGGGAACAAATGATATTACTTATGGATGCAATACa
gaggggggggtttcatggttggcggag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012939-exon-sc0000157-1491911889:501576..502692 | TCONS_00012939-exon-sc0000157-1491911889:501576..502692 | Clytia hemisphaerica | exon |
| TCONS_00012939-exon-sc0000157-1510915933:501576..502692 | TCONS_00012939-exon-sc0000157-1510915933:501576..502692 | Clytia hemisphaerica | exon |
| TCONS_00012939-exon-sc0000157-1575043694:501576..502692 | TCONS_00012939-exon-sc0000157-1575043694:501576..502692 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000157 | supercontig | sc0000157:501576..502692 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013830 | SGNH_hydro |
Blast
The following BLAST results are available for this feature:
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