TCONS_00012938 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012938
Unique NameTCONS_00012938
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length397

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012938 ID=TCONS_00012938|Name=TCONS_00012938|organism=Clytia hemisphaerica|type=transcript|length=397bp
GCTGGTAATAGCCTTTTGGAAAAGTAAACTTCCACAGCTTGTTTTGTGGG
ATCAGGattaaaagacatcttccattgacgaGCCCACTCACTTATTCTTG
CAAGATCTCTGTTTAATTCCTCACTGCTCAAAAGTTGGTCAATcactaat
gaaaataaagatgtgTCATCAGCGAAGATTTTAGCCTTGGTCTCGAGATT
GTTGGAAAGGTCGTTGATGTAGattagaaaaaacaaaggacCAAGAATTG
AGCCTTGAGGAACTCCTGCCTTGATTTGTTTCCACTCAAAAGTTTTCCCA
TTCAAAACAACCCTCTGATACCTACCTGatagaaaatttctcaaaaggga
AAGTAAGGGACCAGTTACCCCGTAAGATTGGAGTTTGTAAATTAAAC
Run BLAST on NCBI

protein sequence of TCONS_00012938-protein

>TCONS_00012938-protein ID=TCONS_00012938-protein|Name=TCONS_00012938-protein|organism=Clytia hemisphaerica|type=polypeptide|length=131bp
LIYKLQSYGVTGPLLSLLRNFLSGRYQRVVLNGKTFEWKQIKAGVPQGSI
LGPLFFLIYINDLSNNLETKAKIFADDTSLFSLVIDQLLSSEELNRDLAR
ISEWARQWKMSFNPDPTKQAVEVYFSKRLLP
Run BLAST on NCBI

transcript from alignment at sc0000157:443468..443864

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012938 ID=TCONS_00012938|Name=TCONS_00012938|organism=Clytia hemisphaerica|type=transcript|length=397bp|location=Sequence derived from alignment at sc0000157:443468..443864 (Clytia hemisphaerica)
GTTTAATTTACAAACTCCAATCTTACGGGGTAACTGGTCCCTTACTTtcc
cttttgagaaattttctatCAGGTAGGTATCAGAGGGTTGTTTTGAATGG
GAAAACTTTTGAGTGGAAACAAATCAAGGCAGGAGTTCCTCAAGGCTCAA
TTCTTGgtcctttgttttttctaatCTACATCAACGACCTTTCCAACAAT
CTCGAGACCAAGGCTAAAATCTTCGCTGATGAcacatctttattttcatt
agtgATTGACCAACTTTTGAGCAGTGAGGAATTAAACAGAGATCTTGCAA
GAATAAGTGAGTGGGCtcgtcaatggaagatgtcttttaatCCTGATCCC
ACAAAACAAGCTGTGGAAGTTTACTTTTCCAAAAGGCTATTACCAGC

Coding sequence (CDS) from alignment at sc0000157:443468..443864

>TCONS_00012938 ID=TCONS_00012938|Name=TCONS_00012938|organism=Clytia hemisphaerica|type=CDS|length=393bp|location=Sequence derived from alignment at sc0000157:443468..443864 (Clytia hemisphaerica)
TTAATTTACAAACTCCAATCTTACGGGGTAACTGGTCCCTTACTTtccct
tttgagaaattttctatCAGGTAGGTATCAGAGGGTTGTTTTGAATGGGA
AAACTTTTGAGTGGAAACAAATCAAGGCAGGAGTTCCTCAAGGCTCAATT
CTTGgtcctttgttttttctaatCTACATCAACGACCTTTCCAACAATCT
CGAGACCAAGGCTAAAATCTTCGCTGATGAcacatctttattttcattag
tgATTGACCAACTTTTGAGCAGTGAGGAATTAAACAGAGATCTTGCAAGA
ATAAGTGAGTGGGCtcgtcaatggaagatgtcttttaatCCTGATCCCAC
AAAACAAGCTGTGGAAGTTTACTTTTCCAAAAGGCTATTACCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007267XLOC_007267Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012938-proteinTCONS_00012938-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012938-exon-sc0000157-1491911889:443468..443864TCONS_00012938-exon-sc0000157-1491911889:443468..443864Clytia hemisphaericaexon
TCONS_00012938-exon-sc0000157-1510915933:443468..443864TCONS_00012938-exon-sc0000157-1510915933:443468..443864Clytia hemisphaericaexon
TCONS_00012938-exon-sc0000157-1575043694:443468..443864TCONS_00012938-exon-sc0000157-1575043694:443468..443864Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000157supercontigsc0000157:443468..443864 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.754846	1.28816	2.35036	5.017	1.52693	2.2121	0.970473	2.27136	1.86417	0.393952	0.57357	1.38249	1.38057	0.521357	1.82166	1.60994	1.84164	0.72601	1.20363	0.839672	1.64211	1.33494	0.865491	0.786857	1.62089	0.180826	1.03504	0.828469	1.88509	0.426803
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00012938 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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