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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012903 ID=TCONS_00012903|Name=TCONS_00012903|organism=Clytia hemisphaerica|type=transcript|length=1965bpRun BLAST on NCBI protein sequence of TCONS_00012903-protein >TCONS_00012903-protein ID=TCONS_00012903-protein|Name=TCONS_00012903-protein|organism=Clytia hemisphaerica|type=polypeptide|length=513bp LFQRKTFKMQCANLTWKKVLGSGSKLSLGRHASLMTRGYASSSTDADLVVRun BLAST on NCBI transcript from alignment at sc0000157:216339..235845- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00012903 ID=TCONS_00012903|Name=TCONS_00012903|organism=Clytia hemisphaerica|type=transcript|length=19507bp|location=Sequence derived from alignment at sc0000157:216339..235845- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000157:216339..235845- >TCONS_00012903 ID=TCONS_00012903|Name=TCONS_00012903|organism=Clytia hemisphaerica|type=CDS|length=16962bp|location=Sequence derived from alignment at sc0000157:216339..235845- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00012903 vs. Swiss-Prot (Human)
Match: DLDH (Dihydrolipoyl dehydrogenase, mitochondrial OS=Homo sapiens GN=DLD PE=1 SV=2) HSP 1 Score: 688.337 bits (1775), Expect = 0.000e+0 Identity = 350/507 (69.03%), Postives = 408/507 (80.47%), Query Frame = 1
Query: 43 TWKKVL------GSGSKLSLGRH--ASLMTRGYASSSTDADLVVIGSGPGGYVAAIKAAQLGLKTVCVEKNDTLGGTCLNVGCIPSKSLLNNSHYFHVAQ-KEFAQRGIKTGEVSLDLDAMMKSKRDSVSGLTSGIAMLFKNNKVEHIQGFGKITGPNQVTVAKNDGSSETVNTKNILIATGSEVTPFPGIEIDEETVVSSTGALSLKELPKRMVVIGAGVIGVELGSVWSRLGSQVTAVEFLDNVGGMGIDMEIAKATQRALTKQGLKFKLGHKVTGAERNPDGSIKVSVEKNKGGKKEDIECDVLLVCVGRRPYTNGIGLEETGVQKDERNRVVVNDRFQSNIPSIYAIGDAVHGPMLAHKAEDEGIITVEGMCGSAVHIDYNCVPSVIYTHPEVAWVGKTEEDLKAEGIPYKVGKFPMAANSRAKTNNDTEGVVKIISHKDTDRLLGCHIVASCAGELINXXXXXXXXXXXXXDVARVCHAHPTVSEAFREACLAAYCGKAINF 1536
+W +V G +++S G +++ R YA DAD+ VIGSGPGGYVAAIKAAQLG KTVC+EKN+TLGGTCLNVGCIPSK+LLNNSHY+H+A K+FA RGI+ EV L+LD MM+ K +V LT GIA LFK NKV H+ G+GKITG NQVT K DG ++ ++TKNILIATGSEVTPFPGI IDE+T+VSSTGALSLK++P++MVVIGAGVIGVELGSVW RLG+ VTAVEFL +VGG+GIDMEI+K QR L KQG KFKL KVTGA + DG I VS+E GGK E I CDVLLVC+GRRP+T +GLEE G++ D R R+ VN RFQ+ IP+IYAIGD V GPMLAHKAEDEGII VEGM G AVHIDYNCVPSVIYTHPEVAWVGK+EE LK EGI YKVGKFP AANSRAKTN DT+G+VKI+ K TDR+LG HI+ AGE++NEAALA+EYGA+ ED+ARVCHAHPT+SEAFREA LAA GK+INF
Sbjct: 3 SWSRVYCSLAKRGHFNRISHGLQGLSAVPLRTYADQPIDADVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHGKDFASRGIEMSEVRLNLDKMMEQKSTAVKALTGGIAHLFKQNKVVHVNGYGKITGKNQVTATKADGGTQVIDTKNILIATGSEVTPFPGITIDEDTIVSSTGALSLKKVPEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGVGIDMEISKNFQRILQKQGFKFKLNTKVTGATKKSDGKIDVSIEAASGGKAEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGRIPVNTRFQTKIPNIYAIGDVVAGPMLAHKAEDEGIICVEGMAGGAVHIDYNCVPSVIYTHPEVAWVGKSEEQLKEEGIEYKVGKFPFAANSRAKTNADTDGMVKILGQKSTDRVLGAHILGPGAGEMVNEAALALEYGASCEDIARVCHAHPTLSEAFREANLAASFGKSINF 509 The following BLAST results are available for this feature:
BLAST of TCONS_00012903 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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