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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012893 ID=TCONS_00012893|Name=TCONS_00012893|organism=Clytia hemisphaerica|type=transcript|length=4966bpRun BLAST on NCBI protein sequence of TCONS_00012893-protein >TCONS_00012893-protein ID=TCONS_00012893-protein|Name=TCONS_00012893-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1416bp KTILRSPNQTVEVGSTNSYLCLCRLKRKLYVDPKYADVYLLKDDSIKITIRun BLAST on NCBI transcript from alignment at sc0000157:117260..135012- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00012893 ID=TCONS_00012893|Name=TCONS_00012893|organism=Clytia hemisphaerica|type=transcript|length=17753bp|location=Sequence derived from alignment at sc0000157:117260..135012- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000157:117260..135012- >TCONS_00012893 ID=TCONS_00012893|Name=TCONS_00012893|organism=Clytia hemisphaerica|type=CDS|length=59514bp|location=Sequence derived from alignment at sc0000157:117260..135012- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00012893 vs. Swiss-Prot (Human)
Match: AGRL3 (Adhesion G protein-coupled receptor L3 OS=Homo sapiens GN=ADGRL3 PE=1 SV=2) HSP 1 Score: 142.51 bits (358), Expect = 8.222e-34 Identity = 108/348 (31.03%), Postives = 176/348 (50.57%), Query Frame = 1
Query: 3010 LSIPILLKFEKIHQPVIGTEENSFFNNTCTFWEVQQ---VGLWSSRGCWKINETETQISCECNHLTNFAILL-DVTGKQSNPLE---LRIMTWIGCGISLAGLFLTLLSYTIFXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAERGSVVTSKLGCQIVAGILHYFMLTTFLWMLIEAINLYRNFVKIFRS-GGDGKFFKNSSRIAWGIPLLIVVINGAVEPDNLGNDQFCVI-LGNSFYFALLLPVALILFINFIVLIMVLRSLSKNQG-SKITSTQKQSLATQTRITLACXXXXXXXXXXXXXXVGDLSYTFQLLFTIFNSLQGFFIFVFYTLLNTDVQKEWKRLFK 4023
L+ P++ + I Q +EEN FN C+FW + G WS++GC + +T +C CNHLTNFA+L+ V K S+ + L ++TW+G +SL L + + ++ F+ L L+ + G R + C + A +LH+F L F WM +E + LY V++F S K+F + +G+P LIV ++ AV+ + G D+ C + L F ++ + P LI+ +N I L + L + + K S ++ + +A LLGLTW F L+ + + + LFTIFNSLQG FIF+F+ +L V+KE+ + +
Sbjct: 783 LADPVVFTVKHIKQ----SEEN--FNPNCSFWSYSKRTMTGYWSTQGCRLLTTNKTHTTCSCNHLTNFAVLMAHVEVKHSDAVHDLLLDVITWVGILLSLVCLLICIFTFCFFRGLQSDRNTIHKNLCISLFVAELLFLI-GINR---TDQPIACAVFAALLHFFFLAAFTWMFLEGVQLYIMLVEVFESEHSRRKYFY---LVGYGMPALIVAVSAAVDYRSYGTDKVCWLRLDTYFIWSFIGPATLIIMLNVIFLGIALYKMFHHTAILKPESGCLDNIKSWVIGAIALLCLLGLTWAFGLMYINESTVIMAYLFTIFNSLQGMFIFIFHCVLQKKVRKEYGKCLR 1117 The following BLAST results are available for this feature:
BLAST of TCONS_00012893 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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