TCONS_00012876 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012876
Unique NameTCONS_00012876
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length433

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012876 ID=TCONS_00012876|Name=TCONS_00012876|organism=Clytia hemisphaerica|type=transcript|length=433bp
TAAATATTAAGTTTATAATCTGGCCATTCGCTCTTTTTAAGTTGTCAGAA
AAATCTAACACtttcaaaattctaaaagaGCTATGGTAACATTGATTAGC
TTcagaaatcaattttcatttggTTTGGTCATTTTCCTGATATTGATTGA
AATGACGTCATGCTTTCTTGGTGGTGGACATGGGAAACGAAATATTAATG
AGTTCCAACGCATATCTCAGgaGAAGGAAGACTCAGACCAATACTGCCGT
GTAGCACTTCTCAAATGTTTACCAAAGATTGTCAGCTTCTTAAGACATAA
CAATGACAATGATCAACAATCGAATACTCCATCACAACACAGGCGTGGAT
TTCCGTCAATGAACCATCCAAGACAAATGAAGAAAGAAAGGCGAGAAAAA
GAAGATGcacatttgtttaattttgttgaTGAG
Run BLAST on NCBI

protein sequence of TCONS_00012876-protein

>TCONS_00012876-protein ID=TCONS_00012876-protein|Name=TCONS_00012876-protein|organism=Clytia hemisphaerica|type=polypeptide|length=117bp
MVTLISFRNQFSFGLVIFLILIEMTSCFLGGGHGKRNINEFQRISQEKED
SDQYCRVALLKCLPKIVSFLRHNNDNDQQSNTPSQHRRGFPSMNHPRQMK
KERREKEDAHLFNFVDE
Run BLAST on NCBI

transcript from alignment at sc0000157:103083..104481+

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012876 ID=TCONS_00012876|Name=TCONS_00012876|organism=Clytia hemisphaerica|type=transcript|length=1399bp|location=Sequence derived from alignment at sc0000157:103083..104481+ (Clytia hemisphaerica)
TAAATATTAAGTTTATAATCTGGCCATTCGCTCTTTTTAAGTTGTCAGAA
AAATCTAACACtttcaaaattctaaaagaGCTATGGTAACATTGATTAGC
TTcagaaatcaattttcatttggTTTGGTCATTTTCCTGATATTGATTGA
AATGACGTCATGCTTTCTTGGTGGTGGACATGGGAAACGAAATATTAATG
AGTTCCAACGCATATCTCAGGTAAGAATCTATTGCCAAAAATCGACCTAC
GTTTTTATACAccactgtctcacagccccggtggaacttcttcccacagt
ggggatgaaaatttctatcgaaatcccaatggggatacaAATTATATTGT
TCCTAGGCCAAAAAATCCAGCggggatagttttggagtgcaattttttcc
attgaatttcaaatggggatgaaaagaaagtcaattttccagtggggctg
agatcatagggtatttttcccaaaGGGGACGAAAATTtagctaaattttc
cagtggttTGGAGGATCAGGTCTTTTCCATAGAGGTGTTTTTATTGTTAA
ACAACCACGAATAGTGGTTCCTAGAGTTTAACTTTCTAAGAAAGCTTTCA
AAATTAATTAGTAATAGCATTTAAAACTATAATGTCCCAAGCAGGATTGT
ACATAAGATCGCAACTACTTTATATTTGGAGAAATACCTTGTATACCTTG
TGTACCTTGTATACCTTGTATACGAATCTTACGAAATTTAATAATGTAAA
ATATCCCAGCTAACACgcaacgttgttttgacgtctTTTAAAGGGTTTAA
ATTGTCCAACAATGTtataaaaacgttgaaacaaaaCTAGCTGGGAATTT
CACATAATGTCCTGAAGAAAAGACGATATTTTCCCACTTTTTcgcttttt
ctaatcttttttacacttttggttCCAGgtctattttcataaattacgcc
aCAAACATCagttgcctcgttttgaaattattgccatggtgattaactct
tAGCGGATTTTATTACAATACAACTACTTTctgttcataaaaaaattatt
taatgtctcaagggatatgatcaccatggaaatAGTTTGAATACGAGGCC
AGTGATGTTCGTAATTTATTGCCCGCGTCTATTGGTTTCAGTGTACATAA
tctccccccttttttatttaatttttttcaaattaggaGAAGGAAGACTC
AGACCAATACTGCCGTGTAGCACTTCTCAAATGTTTACCAAAGATTGTCA
GCTTCTTAAGACATAACAATGACAATGATCAACAATCGAATACTCCATCA
CAACACAGGCGTGGATTTCCGTCAATGAACCATCCAAGACAAATGAAGAA
AGAAAGGCGAGAAAAAGAAGATGcacatttgtttaattttgttgaTGAG

Coding sequence (CDS) from alignment at sc0000157:103083..104481+

>TCONS_00012876 ID=TCONS_00012876|Name=TCONS_00012876|organism=Clytia hemisphaerica|type=CDS|length=702bp|location=Sequence derived from alignment at sc0000157:103083..104481+ (Clytia hemisphaerica)
ATGGTAACATTGATTAGCTTcagaaatcaattttcatttggTTTGGTCAT
TTTCCTGATATTGATTGAAATGACGTCATGCTTTCTTGGTGGTGGACATG
GGAAACGAAATATTAATGAGTTCCAACGCATATCTCAGgaGAAGGAAGAC
TCAGACCAATACTGCCGTGTAGCACTTCTCAAATGTTTACCAAAGATTGT
CAGCTTCTTAAGACATAACAATGACAATGATCAACAATCGAATACTCCAT
CACAACACAGGCGTGGATTTCCGTCAATGAACCATCCAAGACAAATGAAG
AAAGAAAGGCGAGAAAAAGAAGATGcacatttgtttaattttgttgaTGA
GATGGTAACATTGATTAGCTTcagaaatcaattttcatttggTTTGGTCA
TTTTCCTGATATTGATTGAAATGACGTCATGCTTTCTTGGTGGTGGACAT
GGGAAACGAAATATTAATGAGTTCCAACGCATATCTCAGgaGAAGGAAGA
CTCAGACCAATACTGCCGTGTAGCACTTCTCAAATGTTTACCAAAGATTG
TCAGCTTCTTAAGACATAACAATGACAATGATCAACAATCGAATACTCCA
TCACAACACAGGCGTGGATTTCCGTCAATGAACCATCCAAGACAAATGAA
GAAAGAAAGGCGAGAAAAAGAAGATGcacatttgtttaattttgttgaTG
AG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007222XLOC_007222Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012876-proteinTCONS_00012876-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012876-exon-sc0000157-1491911889:103083..103302TCONS_00012876-exon-sc0000157-1491911889:103083..103302Clytia hemisphaericaexon
TCONS_00012876-exon-sc0000157-1510915933:103083..103302TCONS_00012876-exon-sc0000157-1510915933:103083..103302Clytia hemisphaericaexon
TCONS_00012876-exon-sc0000157-1575043694:103083..103302TCONS_00012876-exon-sc0000157-1575043694:103083..103302Clytia hemisphaericaexon
TCONS_00012876-exon-sc0000157-1491911889:104269..104481TCONS_00012876-exon-sc0000157-1491911889:104269..104481Clytia hemisphaericaexon
TCONS_00012876-exon-sc0000157-1510915933:104269..104481TCONS_00012876-exon-sc0000157-1510915933:104269..104481Clytia hemisphaericaexon
TCONS_00012876-exon-sc0000157-1575043694:104269..104481TCONS_00012876-exon-sc0000157-1575043694:104269..104481Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000157supercontigsc0000157:103083..104481 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.594487	0.731196	0	0	2.90954	3.36119	1.27119	0.660398	0.850243	1.51764	1.08587	1.15887	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00012876 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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