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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012808 ID=TCONS_00012808|Name=TCONS_00012808|organism=Clytia hemisphaerica|type=transcript|length=1001bp
TGTTTAACGAAAAGAGCAACGGTTTTGTGGAAGTGAAACTTTTTACAGAC
AAAATGGACAATCGGAAAGTACAGGAGCATTTCAAAATGATTATGTGGTT
GGCAATTGTCACAGATGCTTTAACAATCGAATGTTACGACTGTTCTGGAA
CTCACGCGTATTGTAacaattcaagaaaaacaaTAGCTTGTGATGGACCA
CAGTATTCCTGCTTATTGAGTTCTAGCACTACCCGTGTTCGAGTCATAAA
GAACGGTTTGTTAGATTATGAGGTTTTGACAAGCGTTACCAAGGCCTGTG
GTGTGGAGACACGGTCCTCTTACTGTAAAGATAAGCAAGACATGGACCCC
AACATGCTTCTATGTCAGaCAAATTGGTGTTACAAAGATTTTTGCAATTT
CGATTTGAAGGATATCAACAAGGGAGCTAAAATACAGACCAATCAAGTTG
ACCCTTATGGTTGGCATAAAACGTCAGGAGCAGCACCGATTAAAAAGTAT
TCTGGCATTCTGGTTTGGTTTTTGTCAGTGGTTTTACTGTTACTTTACTT
TTGAATTAACTGGGACGGTTTTGTCCGTCACTATTCTATTAAATATTGTC
CGTCAAATTATACACCGATTTAGTCTTCTATTATCCAGAGGTGCTTAGAA
CAATGGCAAGCATGACTCAGTTGTAATTTAATAGACTCTTTTGTACAAga
tattagtgaggttaagtaaatcggcaAAATGACGACAaagaacgaaaatt
taacaggctagtgagtttcaaccaatcaaatttcgtattttcactagcct
attaaATTTTTCGTCcttcgtcgtgattatcctggtatgcttaacctcag
tattaACGGAAAATACACCCTGACAGTGCATCTATTCATTCAGGGGGTCC
TGTACAGTATATCAAAGCATTATTTTATACTAGAAATTTAAATGTCGgga
aaatttagaataattaGTTTCCAAGGTAAGATTTATTTATTATGTCTTCA
A Run BLAST on NCBI protein sequence of TCONS_00012808-protein >TCONS_00012808-protein ID=TCONS_00012808-protein|Name=TCONS_00012808-protein|organism=Clytia hemisphaerica|type=polypeptide|length=183bp
FNEKSNGFVEVKLFTDKMDNRKVQEHFKMIMWLAIVTDALTIECYDCSGT
HAYCNNSRKTIACDGPQYSCLLSSSTTRVRVIKNGLLDYEVLTSVTKACG
VETRSSYCKDKQDMDPNMLLCQTNWCYKDFCNFDLKDINKGAKIQTNQVD
PYGWHKTSGAAPIKKYSGILVWFLSVVLLLLYF Run BLAST on NCBI transcript from alignment at sc0000156:16434..18422- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012808 ID=TCONS_00012808|Name=TCONS_00012808|organism=Clytia hemisphaerica|type=transcript|length=1989bp|location=Sequence derived from alignment at sc0000156:16434..18422- (Clytia hemisphaerica)
TGTTTAACGAAAAGAGCAACGGTTTTGTGGAAGTGAAACTTTTTACAGAC
AAAATGGACAATCGGAAAGTACAGGAGCATTTCAAAATGATTATGTGGTT
GGCAATTGTCACAGGTTTGTATATTTTATTGGAAGTCAATTTCTCCTGTA
AGATTGGAGATTGAATGATATTCGGGAGATTTGGGGTGTGAATTTAAGCG
AATTACACTGCGATTTCGTAAACATTTTTTGGATTTTTGTGGACTTTTGG
AATTTTCAGAAAAGTGTGCGAGATTTACTAGAACCACACAAAAGCTTATT
CCGAGGCCTAGACTTGTGACTTTATTTAATTTACTCAAACCATACGCTCT
ACATTATAGATGCTTTAACAATCGAATGTTACGACTGTTCTGGAACTCAC
GCGTATTGTAACAATTCAAGAAAAACAATAGCTTGTGATGGACCACAGTA
TTCCTGCTTATTGAGTTCTAGCACTACCCGTGTTCGAGTCATAAAGAACG
GTTTGTTAGATTATGAGGTTTTGACAAGCGTTACCAAGGCCTGTGGTGTG
GAGACACGGTCCTCTTACTGTAAAGATAAGCAAGACATGGACCCCAACAT
GCTTCTATGTCAGGTAAGGATGTGGAGTAATCATATAGTGGCCTTCTCCC
ATTCGTTTTTTGTTAGTTCTAATAACGCTCATACGCCCCTGTAGTAGGGG
GAATTTTGTTCGATTTTTTGGAATCGCTTGACTGTTTTGTTNTAGTAATC
ATATAGTGCATTCGTTTTTTGTTAGTTCTAATAGCGTTCATACGCCCCTG
TCTCAGTGACTTGGTGTGAATTTTGATGTCATAAAGAAATGGGTGTAAGA
TTTAGTTATTTGACAGCACTCGTTATCCAATGAGAAAGGCCAAAGTCTTT
TGGTTGATCTTCAACGATCTTTCTAAGGAGCTCAAAAGGTGATATCTCGA
GAAAACTAGGTGATTTTGATGATATTTTCTTCTACTAATTTTACAAAAAG
ACAGCTAATTTGACTAAATATGTGTATTTAGTCAAATAAATGATGTTTCT
TAGTTCTCTGGTGCTCCAACGACTTGTCTGTCAAGGTTCCACAGCGATGG
CGTTTTAAGATTTAAAATTCATTCATATGGAAATGCTGATCAGCGCCCAA
TTCAATAATAAAATGGTTTTTCCTTCATCATTTTTTCATTCTCATTTTGT
CCCTGTTTTCTTAATTTTTTTGAATCTGCTCTATTTGCTAATATTCTGCT
CTTGATTCTCCTTTCATTCAACATAATACCGCTATCAAATTCGATCATTT
CCGCTGTATAGGGTATATGGATGGCAAAGATGAAAATGCATTTTTTCTAT
TTCTAGACAAATTGGTGTTACAAAGATTTTTGCAATTTCGATTTGAAGGA
TATCAACAAGGGAGCTAAAATACAGACCAATCAAGTTGACCCTTATGGTT
GGCATAAAACGTCAGGAGCAGCACCGATTAAAAAGTATTCTGGCATTCTG
GTTTGGTTTTTGTCAGTGGTTTTACTGTTACTTTACTTTTGAATTAACTG
GGACGGTTTTGTCCGTCACTATTCTATTAAATATTGTCCGTCAAATTATA
CACCGATTTAGTCTTCTATTATCCAGAGGTGCTTAGAACAATGGCAAGCA
TGACTCAGTTGTAATTTAATAGACTCTTTTGTACAAGATATTAGTGAGGT
TAAGTAAATCGGCAAAATGACGACAAAGAACGAAAATTTAACAGGCTAGT
GAGTTTCAACCAATCAAATTTCGTATTTTCACTAGCCTATTAAATTTTTC
GTCCTTCGTCGTGATTATCCTGGTATGCTTAACCTCAGTATTAACGGAAA
ATACACCCTGACAGTGCATCTATTCATTCAGGGGGTCCTGTACAGTATAT
CAAAGCATTATTTTATACTAGAAATTTAAATGTCGGGAAAATTTAGAATA
ATTAGTTTCCAAGGTAAGATTTATTTATTATGTCTTCAA Coding sequence (CDS) from alignment at sc0000156:16434..18422- >TCONS_00012808 ID=TCONS_00012808|Name=TCONS_00012808|organism=Clytia hemisphaerica|type=CDS|length=1656bp|location=Sequence derived from alignment at sc0000156:16434..18422- (Clytia hemisphaerica)
ACAAATTGGTGTTACAAAGATTTTTGCAATTTCGATTTGAAGGATATCAA
CAAGGGAGCTAAAATACAGACCAATCAAGTTGACCCTTATGGTTGGCATA
AAACGTCAGGAGCAGCACCGATTAAAAAGTATTCTGGCATTCTGGTTTGG
TTTTTGTCAGTGGTTTTACTGTTACTTTACTTTTGAATGCTTTAACAATC
GAATGTTACGACTGTTCTGGAACTCACGCGTATTGTAACAATTCAAGAAA
AACAATAGCTTGTGATGGACCACAGTATTCCTGCTTATTGAGTTCTAGCA
CTACCCGTGTTCGAGTCATAAAGAACGGTTTGTTAGATTATGAGGTTTTG
ACAAGCGTTACCAAGGCCTGTGGTGTGGAGACACGGTCCTCTTACTGTAA
AGATAAGCAAGACATGGACCCCAACATGCTTCTATGTCAGTTTAACGAAA
AGAGCAACGGTTTTGTGGAAGTGAAACTTTTTACAGACAAAATGGACAAT
CGGAAAGTACAGGAGCATTTCAAAATGATTATGTGGTTGGCAATTGTCAC
AGACAAATTGGTGTTACAAAGATTTTTGCAATTTCGATTTGAAGGATATC
AACAAGGGAGCTAAAATACAGACCAATCAAGTTGACCCTTATGGTTGGCA
TAAAACGTCAGGAGCAGCACCGATTAAAAAGTATTCTGGCATTCTGGTTT
GGTTTTTGTCAGTGGTTTTACTGTTACTTTACTTTTGAATGCTTTAACAA
TCGAATGTTACGACTGTTCTGGAACTCACGCGTATTGTAACAATTCAAGA
AAAACAATAGCTTGTGATGGACCACAGTATTCCTGCTTATTGAGTTCTAG
CACTACCCGTGTTCGAGTCATAAAGAACGGTTTGTTAGATTATGAGGTTT
TGACAAGCGTTACCAAGGCCTGTGGTGTGGAGACACGGTCCTCTTACTGT
AAAGATAAGCAAGACATGGACCCCAACATGCTTCTATGTCAGTTTAACGA
AAAGAGCAACGGTTTTGTGGAAGTGAAACTTTTTACAGACAAAATGGACA
ATCGGAAAGTACAGGAGCATTTCAAAATGATTATGTGGTTGGCAATTGTC
ACAGACAAATTGGTGTTACAAAGATTTTTGCAATTTCGATTTGAAGGATA
TCAACAAGGGAGCTAAAATACAGACCAATCAAGTTGACCCTTATGGTTGG
CATAAAACGTCAGGAGCAGCACCGATTAAAAAGTATTCTGGCATTCTGGT
TTGGTTTTTGTCAGTGGTTTTACTGTTACTTTACTTTTGAATGCTTTAAC
AATCGAATGTTACGACTGTTCTGGAACTCACGCGTATTGTAACAATTCAA
GAAAAACAATAGCTTGTGATGGACCACAGTATTCCTGCTTATTGAGTTCT
AGCACTACCCGTGTTCGAGTCATAAAGAACGGTTTGTTAGATTATGAGGT
TTTGACAAGCGTTACCAAGGCCTGTGGTGTGGAGACACGGTCCTCTTACT
GTAAAGATAAGCAAGACATGGACCCCAACATGCTTCTATGTCAGTTTAAC
GAAAAGAGCAACGGTTTTGTGGAAGTGAAACTTTTTACAGACAAAATGGA
CAATCGGAAAGTACAGGAGCATTTCAAAATGATTATGTGGTTGGCAATTG
TCACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012808-exon-sc0000156-1575043694:18309..18422 | TCONS_00012808-exon-sc0000156-1575043694:18309..18422 | Clytia hemisphaerica | exon |
| TCONS_00012808-exon-sc0000156-1575043694:17810..18063 | TCONS_00012808-exon-sc0000156-1575043694:17810..18063 | Clytia hemisphaerica | exon |
| TCONS_00012808-exon-sc0000156-1575043694:16434..17066 | TCONS_00012808-exon-sc0000156-1575043694:16434..17066 | Clytia hemisphaerica | exon |
| TCONS_00012808-exon-sc0000156-1510915933:18309..18422 | TCONS_00012808-exon-sc0000156-1510915933:18309..18422 | Clytia hemisphaerica | exon |
| TCONS_00012808-exon-sc0000156-1510915933:17810..18063 | TCONS_00012808-exon-sc0000156-1510915933:17810..18063 | Clytia hemisphaerica | exon |
| TCONS_00012808-exon-sc0000156-1510915933:16434..17066 | TCONS_00012808-exon-sc0000156-1510915933:16434..17066 | Clytia hemisphaerica | exon |
| TCONS_00012808-exon-sc0000156-1491911889:18309..18422 | TCONS_00012808-exon-sc0000156-1491911889:18309..18422 | Clytia hemisphaerica | exon |
| TCONS_00012808-exon-sc0000156-1491911889:17810..18063 | TCONS_00012808-exon-sc0000156-1491911889:17810..18063 | Clytia hemisphaerica | exon |
| TCONS_00012808-exon-sc0000156-1491911889:16434..17066 | TCONS_00012808-exon-sc0000156-1491911889:16434..17066 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000156 | supercontig | sc0000156:16434..18422 - |
Blast
The following BLAST results are available for this feature:
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