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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012803 ID=TCONS_00012803|Name=TCONS_00012803|organism=Clytia hemisphaerica|type=transcript|length=3124bpRun BLAST on NCBI transcript from alignment at sc0000156:469574..493853+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00012803 ID=TCONS_00012803|Name=TCONS_00012803|organism=Clytia hemisphaerica|type=transcript|length=24280bp|location=Sequence derived from alignment at sc0000156:469574..493853+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00012803 vs. Swiss-Prot (Human)
Match: DPOLL (DNA polymerase lambda OS=Homo sapiens GN=POLL PE=1 SV=1) HSP 1 Score: 369.392 bits (947), Expect = 1.168e-114 Identity = 217/536 (40.49%), Postives = 308/536 (57.46%), Query Frame = 2
Query: 131 LNVCIIEQGLGKTRCNIFTDQLKKHGAAVSKSLDTDIEYLLVSKDMKLERLFKILKRKQIKDDIHIVSVDWLSASLVSGKLENLKPYEKFV-DRNNEKRDPSKQGND-SLNTKDEEDLTVRALPXXXXXXXXXLKPRTSYEELLALRNRKDLDSSPDEEEERTS------------PSDSKKDFTKVKSELPKGTWVCAKPSSSTNQKVNHNKHITEKLEVLQKTYENSKDKWRAMGYKKAINSIKNYSKSLSSFEEVKSLPFVGGRLAEKIWEIIETGHLRRLDHIDEKSELINKFXXXXXXXXXXXXXXXXXXFESLEDLEKNADLTFQQKIGIKHYDDINQKMPREEVTEIEQHIRKIAEDVLPGIHMEICGSYRRGRSHCGDIDVLFSHPNDELRKSFLRAVLEKLKETNLITDDLICVNSEE---QRKYMGVCRLPRENAKFRRIDFIVAPFNEWPLALMHFTGSAHFNRSIRLLAKKKNMSLSEHALRKDVIR-VGGEKVNKGTSISISSEKDIFEYFGLDYLKPTDRDW 1684
L ++ G+G+ R +F Q+ +HG + + + +++V + M ER ++L+ Q+ +V WLS L +L ++ + F+ R + PSK D S+ E L AL + V P+ + E D + D EE + S P+ + D + WVCA+PSS + NHN HITEKLEVL K Y DKWRA+GY KAIN++K++ K ++S++E S+P +G R+AEKI EI+E+GHLR+LDHI E ++ F+ +WGAG A W QGF SLED+ A LT QQ IG+KHY D ++MPREE TEIEQ ++K A+ G+ CGSYRRG++ CGD+DVL +HP+ + +L+ L++ +TDDL V+ EE Q+KY+GVCRLP + RR+D IV P++E+ AL++FTGSAHFNRS+R LAK K MSLSEHAL V+R G KV G + +EKD+F GL Y +P +RDW
Sbjct: 44 LRAHVVRTGIGRARAELFEKQIVQHGGQLCPAQGPGVTHIVVDEGMDYERALRLLRLPQLPPGAQLVKSAWLSLCLQERRLVDVAGFSIFIPSRYLDHPQPSKAEQDASIPPGTHEALLQTALSPPPPPTRPVSPPQKAKEAPNTQAQPISDDEASDGEETQVSAADLEALISGHYPTSLEGDCEPSPAPAVLDKWVCAQPSS--QKATNHNLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHISESVPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNSGLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQEGFLTDDL--VSQEENGQQQKYLGVCRLPGPGRRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMSLSEHALSTAVVRNTHGCKVGPGRVLPTPTEKDVFRLLGLPYREPAERDW 575 The following BLAST results are available for this feature:
BLAST of TCONS_00012803 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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