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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012799 ID=TCONS_00012799|Name=TCONS_00012799|organism=Clytia hemisphaerica|type=transcript|length=2786bpRun BLAST on NCBI protein sequence of TCONS_00012799-protein >TCONS_00012799-protein ID=TCONS_00012799-protein|Name=TCONS_00012799-protein|organism=Clytia hemisphaerica|type=polypeptide|length=847bp MSVENPKDKDAKPAIEENAFEVLEKDFQEVLNELTGDKSLEKFRVEYEKLRun BLAST on NCBI transcript from alignment at sc0000156:415867..428947+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00012799 ID=TCONS_00012799|Name=TCONS_00012799|organism=Clytia hemisphaerica|type=transcript|length=13081bp|location=Sequence derived from alignment at sc0000156:415867..428947+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000156:415867..428947+ >TCONS_00012799 ID=TCONS_00012799|Name=TCONS_00012799|organism=Clytia hemisphaerica|type=CDS|length=45792bp|location=Sequence derived from alignment at sc0000156:415867..428947+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00012799 vs. Swiss-Prot (Human)
Match: CFA58 (Cilia- and flagella-associated protein 58 OS=Homo sapiens GN=CFAP58 PE=1 SV=1) HSP 1 Score: 961.444 bits (2484), Expect = 0.000e+0 Identity = 554/835 (66.35%), Postives = 707/835 (84.67%), Query Frame = 3
Query: 246 DKDAKPAIEENAFEVLEKDFQEVLNELTGDKSLEKFRVEYEKLHRALKKSHESEKRLMGKCRELNSEIVANAAKVGTALKLSQEDQTTISSLKKEIEKAWKMVDAAHEKETRARETIQALKQEITNLTKLVEQGAGLNMGQDNSVQELLKVKEDLIKDRDEKLSELVKMRKDLTEATDKLGSLENDKTDALLKISELREDIQVRSNEAQRXXXXXXXXXXXXXXXXVEMETKNNDLKAKHSQLQRSQEENMRVEQQLKEQRILNERAVKDTELLNNRLIKLQQDFDTQLSAAEQLAQENNQKNIELRAKEDEVGNLKTDSVRLTRQREAIQRKLRTIEEQKVDTEHQKETLKNQINALEKEFDSSKKQQEVDKKAIDDLVRERDILNKNLLKAAGATQKQLSLVRLHEQAKKNLEQEIQNYKDEAQKQRKIIYQLEKERDRYINEASDLTQKVLQHMEDVKVREMQIFDYKKKIAEAETKLKQQQNLYEAVRSDRNLYSKNLIECQDEITEMKRKLKIMNHQIDQLKEEITSKEAALVKEHLEHQRVEKEKDALKAELQMMKKEASESKSYIEQQQTEERKLLKIIQEADSERLRQKKELDQVISERDILGTQLVRRNDELALLYEKIKIQKSTLDKGEIQYRQXXXXXXXXXXXXXXXXXXXHILTKSVSNVEELRREVYNMQRELLRERTRCKALEEELENPMNIHRWRKLEGSDPSTFEMIQKIQTLQKRLIQKTXXXXXXXXXXXXXXXXXXXXXXXXARQPGPEVAEQLSIYQQNLKEKTKQMKTMASELNMYESQVQDFKYDIERLSRELQDVKKKYFMQKKREQQQKS 2750
+K K +EE+AFE +E+DFQ VL+EL+GDKSLEKFR+EYE+LH +KKS+++EKRLM KCRELN+EIV N+AKV TALKLSQ+DQTTI+SLKKEIEKAWKMVD+A++KE +A+ETI ALK+EI NLTKLVEQG+GL+M Q +++++LL+ KE++ K+RD+ LSE+VK+R+ L + T++ E K +A IS+ +++IQ R NEA RE RKKEKLEKE KQ + +M+++ ++KA +Q+S+EE ++EQQLKEQ+ILNERA K+ E R KLQQ+ + EQL+QEN QK +EL+AKE+EV ++ D +L + RE I +KL E+QK + E KETLKNQI LE+E ++SKKQ E+D+KA+D+L+RERDILNKN+LKA ATQKQ LV+LHEQAK+NLE EIQNYKDEAQKQRKII+ LEKERDRYIN+ASDLTQKVL +MED+KVRE QIFDY+KKIAE+E KLKQQQNLYEAVRSDRNLYSKNL+E QDEIT+MKRKLKIM HQ+D+LKE+I++KE+ALVK HLE QR+EKEK+ LKAELQ ++++A E+K +IE+Q+ EERKLL+II EAD ERLRQKKELDQVISERDILG+QLVRRNDELALLYEKIKIQ+S L+KGE QY QR+ED+R+L+LEIKKLRREK IL +S++NVEELR+E ++MQRELL+ERTRC+ALEEELENP+N+HRWRKLE SDP+ +E+IQKI TLQKRLI KTEEVVEKELL++EKEKLY+ELK +LARQPGPE AEQL +Y++ L +K +Q+K ++SELNMYE Q +++KY++E+L+ ELQ++KKKY QK++EQ QK+
Sbjct: 4 EKGGKQVLEESAFEEMERDFQGVLHELSGDKSLEKFRIEYERLHAVMKKSYDNEKRLMAKCRELNAEIVVNSAKVATALKLSQDDQTTIASLKKEIEKAWKMVDSAYDKEQKAKETILALKEEIVNLTKLVEQGSGLSMDQHSNIRDLLRFKEEVTKERDQLLSEVVKLRESLAQTTEQQQETERSKEEAEHAISQFQQEIQQRQNEASREFRKKEKLEKELKQIQADMDSRQTEIKALQQYVQKSKEELQKLEQQLKEQKILNERAAKELEQFQMRNAKLQQENEQHSLVCEQLSQENQQKALELKAKEEEVHQMRLDIGKLNKIREQIHKKLHHTEDQKAEVEQHKETLKNQIVGLEREVEASKKQAELDRKAMDELLRERDILNKNMLKAVNATQKQTDLVKLHEQAKRNLEGEIQNYKDEAQKQRKIIFHLEKERDRYINQASDLTQKVLMNMEDIKVRETQIFDYRKKIAESEIKLKQQQNLYEAVRSDRNLYSKNLVEAQDEITDMKRKLKIMIHQVDELKEDISAKESALVKLHLEQQRIEKEKETLKAELQKLRQQALETKHFIEKQEAEERKLLRIIAEADGERLRQKKELDQVISERDILGSQLVRRNDELALLYEKIKIQQSVLNKGESQYNQRLEDMRILRLEIKKLRREKGILARSMANVEELRQEFFHMQRELLKERTRCRALEEELENPLNVHRWRKLEASDPNAYELIQKIHTLQKRLISKTEEVVEKELLLQEKEKLYMELKHVLARQPGPEAAEQLKLYRRTLHDKKQQLKVLSSELNMYEVQSKEYKYEVEKLTNELQNLKKKYLAQKRKEQLQKN 838 The following BLAST results are available for this feature:
BLAST of TCONS_00012799 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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