TCONS_00012794 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012794
Unique NameTCONS_00012794
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length456

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012794 ID=TCONS_00012794|Name=TCONS_00012794|organism=Clytia hemisphaerica|type=transcript|length=456bp
gctctgtaaaaatttcaaaattatcaattaATCCTCGTCCAATCATGTCG
AATTTGGACTTTTTTACAAGGAAACGCTTGCATTAATGAATCTGGCTAAC
CGAGTCTTTTAAACTTGTTTGTGACTAGTAATCAGCGATTAAAGTCAAAC
CAGCATTCTAGGGGCCATTTAACGCTTGCAGTTTTGGGCGCTGAATATCA
ATGGGCATCCCAGTACTCCACTAATTTGTTCGgaaatagatttcgattta
gtgTAGATACATACTAACCTCACTTGGTTTCATCCAAACGCACGTTCCTA
CTGAGCATCCACTTTGCTTCAAAAACTCGTTAAAGTCAGATGTCCGTTTA
TTGCAACATGTCCAAAATTTATACCCTTCATGGAAAACAGGATATCCAGG
GTGATAAGTACATTCTCCGTGTGTTCGGTCCTCTcctaaaaatttctaaa
atgaaa
Run BLAST on NCBI

transcript from alignment at sc0000156:312656..313281+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012794 ID=TCONS_00012794|Name=TCONS_00012794|organism=Clytia hemisphaerica|type=transcript|length=626bp|location=Sequence derived from alignment at sc0000156:312656..313281+ (Clytia hemisphaerica)
gctctgtaaaaatttcaaaattatcaattaATCCTCGTCCAATCATGTCG
AATTTGGACTTTTTTACAAGGAAACGCTTGCATTAATGAATCTGGCTAAC
CGAGTCTTTTAAACTTGTTTGTGACTAGTAATCAGCGATTAAAGTCAAAC
CAGCATTCTAGGGGCCATTTAACGCTTGCAGTTTTGGGCGCTGAATATCA
ATGGGCATCCCAGTACTCCACTAATTTGTTCGgaaatagatttcgattta
gtgTAGATACATACTAACCTCACTTGGTTTCATCCAAACGCACGTTCCTA
CTGAGCATCCACTTTGCTTCAAAAACTCGTTAAAGTCAGATGTCCGTTTA
TTGCAACATGTCCAAAATTTATAACTGAAAGAGTAACGTAAAGACaagga
aattttattttatatttctaaCGGTAATGTAATTCTCCTACGCTCAAACC
ACCCCCAAAGCGTTTTCATTTGACCGTCAtgtttcaagattttttgagcG
AAAAGTGTAAGGGAATTCATAGATATAATTATCCCCATACATACCCTTCA
TGGAAAACAGGATATCCAGGGTGATAAGTACATTCTCCGTGTGTTCGGTC
CTCTcctaaaaatttctaaaatgaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007180XLOC_007180Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012794-exon-sc0000156-1491911889:312656..313025TCONS_00012794-exon-sc0000156-1491911889:312656..313025Clytia hemisphaericaexon
TCONS_00012794-exon-sc0000156-1510915933:312656..313025TCONS_00012794-exon-sc0000156-1510915933:312656..313025Clytia hemisphaericaexon
TCONS_00012794-exon-sc0000156-1575043694:312656..313025TCONS_00012794-exon-sc0000156-1575043694:312656..313025Clytia hemisphaericaexon
TCONS_00012794-exon-sc0000156-1491911889:313196..313281TCONS_00012794-exon-sc0000156-1491911889:313196..313281Clytia hemisphaericaexon
TCONS_00012794-exon-sc0000156-1510915933:313196..313281TCONS_00012794-exon-sc0000156-1510915933:313196..313281Clytia hemisphaericaexon
TCONS_00012794-exon-sc0000156-1575043694:313196..313281TCONS_00012794-exon-sc0000156-1575043694:313196..313281Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000156supercontigsc0000156:312656..313281 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.387399	0	0.553995	0.348046	0	0	0.554437	0.166997	0.339817	1.00471	0.152268	0.163322	0	0	0	0	0	0	0	0	0.462642	0	0.323714	0	0.563159	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00012794 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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