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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012776 ID=TCONS_00012776|Name=TCONS_00012776|organism=Clytia hemisphaerica|type=transcript|length=1550bpRun BLAST on NCBI protein sequence of TCONS_00012776-protein >TCONS_00012776-protein ID=TCONS_00012776-protein|Name=TCONS_00012776-protein|organism=Clytia hemisphaerica|type=polypeptide|length=330bp KTIRMTIPICKDETTFKMLVQKAASHGQLVVLHFEADWAEECKQMNEVLERun BLAST on NCBI transcript from alignment at sc0000156:41850..48859+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00012776 ID=TCONS_00012776|Name=TCONS_00012776|organism=Clytia hemisphaerica|type=transcript|length=7010bp|location=Sequence derived from alignment at sc0000156:41850..48859+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000156:41850..48859+ >TCONS_00012776 ID=TCONS_00012776|Name=TCONS_00012776|organism=Clytia hemisphaerica|type=CDS|length=12909bp|location=Sequence derived from alignment at sc0000156:41850..48859+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00012776 vs. Swiss-Prot (Human)
Match: GLRX3 (Glutaredoxin-3 OS=Homo sapiens GN=GLRX3 PE=1 SV=2) HSP 1 Score: 346.28 bits (887), Expect = 1.221e-114 Identity = 161/300 (53.67%), Postives = 220/300 (73.33%), Query Frame = 1
Query: 85 LVVLHFEADWAEECKQMNEVLEELAKEYTHTIFLRVEAEEVEKVTLHYEIESVPSFVLLKEQKVLTKVEGADAAKLSSAVKHYATS-HIAPTIQPDKTENINEKLKKLINARPCMLFMKGNPSEPKCGFSRQVIQILQEQEVKFGSFDILSDNEVRQGLKTYSDWPTYPQFYVNGELLGGLDIIKELIENGEFKDMLPKPEDLNKRLETLTKQHKLMIFMKGNREAPKCKFSRALMEIMQPLNLDFQTFDILQDEEVRQGLKTFSNWPTFPQIYVNGEFVGGLDIIKELKENDELESTLK 981
L+V+HF A WA +C QMNEV+ ELAKE F+++EAE V +V+ YEI SVP+F+ K + + +++GA A +L+ V+ +A+S P+ E++N +LKKL +A PCMLFMKG P EP+CGFS+Q+++IL + ++F SFDI SD EVRQGLK YS WPTYPQ YV+GEL+GGLDIIKEL + E + PK L +RL+ LT + +M+FMKGN++ KC FS+ ++EI+ ++++TFDIL+DEEVRQGLK +SNWPT+PQ+YV GE VGGLDI+KELKEN EL L+
Sbjct: 33 LLVVHFWAPWAPQCAQMNEVMAELAKELPQVSFVKLEAEGVPEVSEKYEISSVPTFLFFKNSQKIDRLDGAHAPELTKKVQRHASSGSFLPSANEHLKEDLNLRLKKLTHAAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLKAYSSWPTYPQLYVSGELIGGLDIIKELEASEELDTICPKAPKLEERLKVLTNKASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKAYSNWPTYPQLYVKGELVGGLDIVKELKENGELLPILR 332 The following BLAST results are available for this feature:
BLAST of TCONS_00012776 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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