TCONS_00012767 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012767
Unique NameTCONS_00012767
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length465

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012767 ID=TCONS_00012767|Name=TCONS_00012767|organism=Clytia hemisphaerica|type=transcript|length=465bp
CCACTCGTTCAGCAACCTAATACAACTTGCGGCATTTTCGACCACTTTGT
TGATCATTATACACTTTTTGTTCCACCATCAACCTTTATATgaatttcca
aaataaatttcaaaaatttttgaaaaaagaattgtcacgtgatagctgat
gacgtcatcgaatttaaaacgaaaaaataaaaattcagttAGCTCTTTGG
TAGTACGACCATTCGATAGCTCTCAATGAGTAGTGCtcgaaaatggggtc
acttgtTATCGAGACCCTTCTTAAACtcgaaaaatttagattttcgtTTT
GCCCATATATGGTAAAAATCAACGATTGACCAggcaattttgcttgaaaa
agcttgGATGGGTGTTTATACGGTATGTTTCCGACATcgtagagacctga
aatttggcatgAAGCAAGcctaagtgaaaataaaaaatttgaattttaga
ctttttcaaTTTAGG
Run BLAST on NCBI

transcript from alignment at sc0000147:486371..486835

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012767 ID=TCONS_00012767|Name=TCONS_00012767|organism=Clytia hemisphaerica|type=transcript|length=465bp|location=Sequence derived from alignment at sc0000147:486371..486835 (Clytia hemisphaerica)
CCTAAAttgaaaaagtctaaaattcaaattttttattttcacttaggCTT
GCTTcatgccaaatttcaggtctctacgATGTCGGAAACATACCGTATAA
ACACCCATCcaagctttttcaagcaaaattgccTGGTCAATCGTTGATTT
TTACCATATATGGGCAAAacgaaaatctaaatttttcgaGTTTAAGAAGG
GTCTCGATAacaagtgaccccattttcgaGCACTACTCATTGAGAGCTAT
CGAATGGTCGTACTACCAAAGAGCTaactgaatttttattttttcgtttt
aaattcgatgacgtcatcagctatcacgtgacaattcttttttcaaaaat
ttttgaaatttattttggaaattcATATAAAGGTTGATGGTGGAACAAAA
AGTGTATAATGATCAACAAAGTGGTCGAAAATGCCGCAAGTTGTATTAGG
TTGCTGAACGAGTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007164XLOC_007164Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012767-exon-sc0000147-1491911889:486371..486835TCONS_00012767-exon-sc0000147-1491911889:486371..486835Clytia hemisphaericaexon
TCONS_00012767-exon-sc0000147-1510915933:486371..486835TCONS_00012767-exon-sc0000147-1510915933:486371..486835Clytia hemisphaericaexon
TCONS_00012767-exon-sc0000147-1575043694:486371..486835TCONS_00012767-exon-sc0000147-1575043694:486371..486835Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000147supercontigsc0000147:486371..486835 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.401506	0.397538	0	0	0.697589	0.0671553	0.388008	0.824598	2.30862	2.49314	1.57328	1.00463	0.913889	0	0.132346	0.217903	0.943676	0	0.892522	0.745248	0.901816	0.371968	0	0.382974	0	0	1.17182	3.52316	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00012767 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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