TCONS_00012750 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00012750
Unique Name	TCONS_00012750
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2428

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000147:462926..465353-

transcript sequence

>TCONS_00012750 ID=TCONS_00012750|Name=TCONS_00012750|organism=Clytia hemisphaerica|type=transcript|length=2428bp
GCAAAGTAAGATAACCGTTCTCTTTGAAAAATAACATTTGATTGAATTAT
ATAAATACAGAGACTATAACTTCTATAAACACATACCGTTTTTAATGTTG
TTATCTTCTGAAATGGTTTCTGTCATAAGTAGTGATGTATAGCTCAAACA
TTTATGTAGTGAATTATTGTTATCTTGTGAGTAAGCTCTTCGTTCACatg
ttttcagattttctttgtCGGTTATGATATTAGAAAAGAGGCGTCGTGTT
GGATATGAAGCTTCTTCGACATAGTTTTCTAGagaactttgtttttttta
aagcgCTCTTGTACTACAGAAAATGATGTTCGCTCTATCAAACAATATCT
CTGTGTCTCTTATCGTGATTGCAGATAAAGATCTGCGAGAAGAAAGTGAA
ACCGATACAGATTCTATACACGTCTTTCTATGATGTTACACGttatcttg
ttttcaaaaatgttgtttctCTTAGTTGTATGAATGATTTTGCTTACTGC
TGTAGTTTCTACTTCTTTTAGTTTGACTCAACTCTTATGAAAGCTGTAAA
CTTGATAATCAAatttcaatgttcttttctttCAGTAATATActcaaaac
taaaacaaaactaaaaacacGATGACTTTTTGAAGTCTGTCCAAGAAGAA
GTCAAGTCCACGAATCTTCAAGGGATTCCGTCCACCAATCAACTTAACAA
TTATGCCTAAAGATGACACGATCGTAGACAATTTTGTGACAGTCACTAAA
CGTTTACCCTTGAAAGCCCGTTTCCTTGTCGGAATATGTTTAATAGTGGT
CGTGTTTGAGTTGATCTCAGGAGTTGTGGAACTGAATGAGGACAATGAAT
ATGCTACTGGACGCTTAAGGAACAAGAGACCTCAGGACATTGCCAAGATT
CGAGAACGCAAAGAAATCAGTCAAGAGACAATTTGGGATTTCTCGCATGG
CAGTGTGTCGGTTGATCGTAGCAATGAGTTCAACGCACAACAAAAACAAT
TTGTACACATTCATAGGAACCCGAAATATAATACTGTGTCCAATAATAAC
AAAGATACTAAAGTTATATTTGGCGACACTCATGGTAGACTGTCTGAACT
TGAGTTAAAACATGAAGACCAAAGAAACAGTACATCGACAGAAGCTCCAG
CCAATGAACAATTAGTCATTTGAAGAAGATCTTTACTAGATAGGAATGCA
TAAAGATCAATTACCGATTCTTTCAAGACTTTTTACCAATTCTTTCTTCA
AACTAGAATTTCAACAGCtacacaaaaaaaaacgaaaaattttaaagaca
gtCAGGGATAACATAACTTCAATTAgcttataatttttattttttaattt
ctcatTAGCATAGAATCGTCTGATTATTGTCAGTAATCAGCATCAATCAG
ACAGGTTTTATACAAAGCTAAAGAGCTTGTAGGCTAATTGTGAACTTACT
CTGACTGACAAATAGACTACGCagtaaaataatttatttgtagATAGACG
ATAATAGGTATCTTGCAATAATAGAGATcattttcagggttttttcagAA
TCACACATTATTACTTCCAGGTTTTTGTTTACTCCCTTACTTGCGTAGAT
AATATTTGGTTCACCAACCCCTTTTGTATTTGGAAGAAGGTCACATTGAT
TGTCATTTATTTCCCTCTCGATGGTCAAGAACCAACAAACACCTTTTCTG
GTTTAATTCCTGGTGAACttgataaatattttgataacatCTTAAATAAA
TCAAGTTGATAGGGAATAGAAGTTCTTCTCGGTATCTGCTCTTTCTGAGA
TAAGACGTGTAATTACTTTTTCCTGGAAGCTAAACTCACTCTCATTCTTT
TCGGCGCAAGAAACTTTATGGTCTTTGGAAATTTATGTTATGTCTTTTTC
CCATTTGAAAGTCTTTTAGGGGGGAGATGTCATTTCGAATTTCGTCTTTA
CCGACCTATGAAAAGTCTTAAATTAAATAAAGAGTTAATTTATACGTCAT
TGTATTTAGTTTAGACCAGCTAATAAATTTACCATCCACCGTTAATGTTT
TCCAAGAGAGCAGCAACAATTTCCCTACAATGAGTCTGATTAACCTTTAT
GTTGCTCCTCACTAGAAAAACTTATTATACGTAGAAGGTGTTGTCGGCAA
TTTTTTTATTCCCACAATATGAACGCTTAATTTTTCCGGATTTTTTATTC
CGAAAATGTCatattttcagtggtttcaaatattttttagttttttttta
ccatattGAGTCGACGTGTAATAATGTGTGTCCCATTATTgatgattttg
actttttttattttcactcaGTTTGTTTCTTGTTTCGTGACCTacataga
aaaataattataaattatgttaaagatagagaaatttattcaaattattg
gAAGAGAAGACACACAAAAAAAGCAATC

Run BLAST on NCBI

transcript from alignment at sc0000147:462926..465353-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00012750 ID=TCONS_00012750|Name=TCONS_00012750|organism=Clytia hemisphaerica|type=transcript|length=2428bp|location=Sequence derived from alignment at sc0000147:462926..465353- (Clytia hemisphaerica)
GCAAAGTAAGATAACCGTTCTCTTTGAAAAATAACATTTGATTGAATTAT
ATAAATACAGAGACTATAACTTCTATAAACACATACCGTTTTTAATGTTG
TTATCTTCTGAAATGGTTTCTGTCATAAGTAGTGATGTATAGCTCAAACA
TTTATGTAGTGAATTATTGTTATCTTGTGAGTAAGCTCTTCGTTCACATG
TTTTCAGATTTTCTTTGTCGGTTATGATATTAGAAAAGAGGCGTCGTGTT
GGATATGAAGCTTCTTCGACATAGTTTTCTAGAGAACTTTGTTTTTTTTA
AAGCGCTCTTGTACTACAGAAAATGATGTTCGCTCTATCAAACAATATCT
CTGTGTCTCTTATCGTGATTGCAGATAAAGATCTGCGAGAAGAAAGTGAA
ACCGATACAGATTCTATACACGTCTTTCTATGATGTTACACGTTATCTTG
TTTTCAAAAATGTTGTTTCTCTTAGTTGTATGAATGATTTTGCTTACTGC
TGTAGTTTCTACTTCTTTTAGTTTGACTCAACTCTTATGAAAGCTGTAAA
CTTGATAATCAAATTTCAATGTTCTTTTCTTTCAGTAATATACTCAAAAC
TAAAACAAAACTAAAAACACGATGACTTTTTGAAGTCTGTCCAAGAAGAA
GTCAAGTCCACGAATCTTCAAGGGATTCCGTCCACCAATCAACTTAACAA
TTATGCCTAAAGATGACACGATCGTAGACAATTTTGTGACAGTCACTAAA
CGTTTACCCTTGAAAGCCCGTTTCCTTGTCGGAATATGTTTAATAGTGGT
CGTGTTTGAGTTGATCTCAGGAGTTGTGGAACTGAATGAGGACAATGAAT
ATGCTACTGGACGCTTAAGGAACAAGAGACCTCAGGACATTGCCAAGATT
CGAGAACGCAAAGAAATCAGTCAAGAGACAATTTGGGATTTCTCGCATGG
CAGTGTGTCGGTTGATCGTAGCAATGAGTTCAACGCACAACAAAAACAAT
TTGTACACATTCATAGGAACCCGAAATATAATACTGTGTCCAATAATAAC
AAAGATACTAAAGTTATATTTGGCGACACTCATGGTAGACTGTCTGAACT
TGAGTTAAAACATGAAGACCAAAGAAACAGTACATCGACAGAAGCTCCAG
CCAATGAACAATTAGTCATTTGAAGAAGATCTTTACTAGATAGGAATGCA
TAAAGATCAATTACCGATTCTTTCAAGACTTTTTACCAATTCTTTCTTCA
AACTAGAATTTCAACAGCTACACAAAAAAAAACGAAAAATTTTAAAGACA
GTCAGGGATAACATAACTTCAATTAGCTTATAATTTTTATTTTTTAATTT
CTCATTAGCATAGAATCGTCTGATTATTGTCAGTAATCAGCATCAATCAG
ACAGGTTTTATACAAAGCTAAAGAGCTTGTAGGCTAATTGTGAACTTACT
CTGACTGACAAATAGACTACGCAGTAAAATAATTTATTTGTAGATAGACG
ATAATAGGTATCTTGCAATAATAGAGATCATTTTCAGGGTTTTTTCAGAA
TCACACATTATTACTTCCAGGTTTTTGTTTACTCCCTTACTTGCGTAGAT
AATATTTGGTTCACCAACCCCTTTTGTATTTGGAAGAAGGTCACATTGAT
TGTCATTTATTTCCCTCTCGATGGTCAAGAACCAACAAACACCTTTTCTG
GTTTAATTCCTGGTGAACTTGATAAATATTTTGATAACATCTTAAATAAA
TCAAGTTGATAGGGAATAGAAGTTCTTCTCGGTATCTGCTCTTTCTGAGA
TAAGACGTGTAATTACTTTTTCCTGGAAGCTAAACTCACTCTCATTCTTT
TCGGCGCAAGAAACTTTATGGTCTTTGGAAATTTATGTTATGTCTTTTTC
CCATTTGAAAGTCTTTTAGGGGGGAGATGTCATTTCGAATTTCGTCTTTA
CCGACCTATGAAAAGTCTTAAATTAAATAAAGAGTTAATTTATACGTCAT
TGTATTTAGTTTAGACCAGCTAATAAATTTACCATCCACCGTTAATGTTT
TCCAAGAGAGCAGCAACAATTTCCCTACAATGAGTCTGATTAACCTTTAT
GTTGCTCCTCACTAGAAAAACTTATTATACGTAGAAGGTGTTGTCGGCAA
TTTTTTTATTCCCACAATATGAACGCTTAATTTTTCCGGATTTTTTATTC
CGAAAATGTCATATTTTCAGTGGTTTCAAATATTTTTTAGTTTTTTTTTA
CCATATTGAGTCGACGTGTAATAATGTGTGTCCCATTATTGATGATTTTG
ACTTTTTTTATTTTCACTCAGTTTGTTTCTTGTTTCGTGACCTACATAGA
AAAATAATTATAAATTATGTTAAAGATAGAGAAATTTATTCAAATTATTG
GAAGAGAAGACACACAAAAAAAGCAATC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_007149	XLOC_007149	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00012750-exon-sc0000147-1575043694:462926..465353	TCONS_00012750-exon-sc0000147-1575043694:462926..465353	Clytia hemisphaerica	exon
TCONS_00012750-exon-sc0000147-1510915933:462926..465353	TCONS_00012750-exon-sc0000147-1510915933:462926..465353	Clytia hemisphaerica	exon
TCONS_00012750-exon-sc0000147-1491911889:462926..465353	TCONS_00012750-exon-sc0000147-1491911889:462926..465353	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000147	supercontig	sc0000147:462926..465353 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.85892	2.64095	1.42116	0.949715	11.8699	11.0402	12.8827	12.794	1.76888	2.32685	1.98858	2.52513	3.24025	4.39572	3.34476	3.05308	3.30371	4.13702	2.51904	1.95817	3.55677	2.29594	4.18793	4.51268	14.684	13.6892	11.8503	13.2766	15.8562	14.93

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00012750 vs. Swiss-Prot (Human)

BLAST of TCONS_00012750 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00012750 (transcript) - C. hemisphaerica