TCONS_00012729 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00012729
Unique Name	TCONS_00012729
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1837

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000147:220729..226247-

transcript sequence

>TCONS_00012729 ID=TCONS_00012729|Name=TCONS_00012729|organism=Clytia hemisphaerica|type=transcript|length=1837bp
CGAAACATTTACAACTTCAAAACGTTCTTTAGTTTTAGCAGaaataataa
aaagtaaaataaagatGACAGACTCTGCAAGATCACTTAACCTTTCGTCC
GACATTCAACGAGCCATCGAATTACTGGATGAACTAAGCCAAAGAAATGA
TCTACCagctcaaaaaatgcaaaatctcAAATCGGTTTTGGAAAGTCACT
TTTGCCAAAGTGTAAAAGATGTTTACGAACAAGTTTACGAGACGGTAGAT
TTCAATACAAATGATGAAGTACGTGCGAACGCAACAGCAAAGGCAACAGT
AGCGGCATTTGCAGCGAGTGAAGGGCACGCACACCCAAGAATTGTTGAAT
TACCAAAAACTGATGAAGGATTAGGATTTAACGTTATGGGAGGACTGGAA
CAAAATTCACCAATTTACATTTCCAGAATTATCCCTGACGGTGTTGCTGA
TAGACATGGTGGTTTGAAACGTGGCGATCAACTGCTTGCAGTAAATGGTG
TGAACGTTGAGGGGGAGCACCACGAGAAAGCTGTAGATTTATTGAAAGAG
GCTGTTGGAAGAGTCAAACTTGTCGTTAAATATACTCCCCaagttcttGA
AGAAATGGAGTCACGTTTTGATCGTAGAAAGAAATGAGCTAGTGAATAAT
TTCGTGAAGTTGTCACGATTTACTTCACGACTTGTCAACAGGCTTTTTCT
AGTCACCGAAATGTCTCATAACCAACACAATTATTCGTTTGTTGTCTGTT
CTTTACCTTGCAAGGGTAATGCGTGATTTTTGCATTACAGTGATAAGGCT
CAAAGAGCAAACTGCTGCTCGTAATACTGTTTATACTTAGGCTACGTGGT
AATGACACACCTTTTTTGTATGtaattattttaaaatgttcttcccTACC
TTGCAGGGGTTTTGTTGGCTATTTCTTGGAAGAGAAAGTTGGACTTGATT
TTATAAGTTATAACATTTTTATAGTTTTCAAtctatttattagttttttt
taaatcgctttTAGCTCTTTTTCATTCCCGTTGTGCGATTTGAAGTAGAT
TTATGAAGCTTACATTTCGTCGTATTTAATGCGCCGCTTCTAGCATTAAC
AGCGTATTACTTTAAGTGCTGCGGACTCCACAAAAAATCTTCCACTAAAG
TCCTAAATATAGGACATTGTTTGGAAGAAAAATACCCAGCTGGTACAGAA
CGTTATTTTGACgtctttttaatgtttttagattttattgGAGTAAGATA
GACATTTCGTCCTAGTTGGGTAGGATAAGGACATGGCTTCGACaagtttt
ttattctctttGGGGCTTCCTTTTTTTACTGAACAGTACTTTTTCTTGTT
CATTGACAAGTGTGAAAACAGCAATTTGATTAATCATGTTATTTTGAAGA
TACCACAGTTTTTTACAAGAATGAGAAGGTATGCCTGCTTTTTTCTAGAG
TTTTAAGCAAAACTTATGACCTGTCAATATTTTAacttttccattatttt
tacgaATTATGAAATCATAGAACATGTTTTATATTTAGATAGCATTTTTT
CTTTCAGCTGTCTAGATGTCGATTTCTAGAAGCTTTCTTGAAACACTGCA
CTGCAATCTATAATTATACTTGAAGCTTTAAATAGCAGTAAATACATTTC
TCGAATCTGGGTCCAATAACATTAAACACCTTTAAAGTTGGATTTTAGGT
TAGAGACTTGAATCTTTATATTTGATAAAGTCATtgagttttgataaaat
ctgatacattttttaaaatttacattCTAACATCGGGCCTCTTACAAAAG
TAACCTCcatatttttatctttattcATCTGCAAGCC

Run BLAST on NCBI

transcript from alignment at sc0000147:220729..226247-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00012729 ID=TCONS_00012729|Name=TCONS_00012729|organism=Clytia hemisphaerica|type=transcript|length=5519bp|location=Sequence derived from alignment at sc0000147:220729..226247- (Clytia hemisphaerica)
CGAAACATTTACAACTTCAAAACGTTCTTTAGTTTTAGCAGAAATAATAA
AAAGTAAAATAAAGATGACAGACTCTGCAAGATCACTTAACCTTTCGTCC
GGTAAGATTCTACTATTTTGTTAATTTTACTTGCTTCTACAATTCTATTT
TCCGTTTTTAACTAACACAGCAATTCATGGAAACTACTGTGATCCTGTGG
GGACCCTACTCCCTTATGTTTTCACTTCACTCCGTTATATATTGAAATCT
GAAAGAATCCAATGATTGTCTAAACTAATTCTAAATAAAATAAGATTACT
TTGATTCATTTTTAATTTCTGAAACCTGCTTTTTTATTTAGACATTCAAC
GAGCCATCGAATTACTGGATGAACTAAGCCAAAGTATGTGAATTTCATTT
TTAATAAACTCTTTATTTATAAGACTGCTGTCGGGACCTGGAAAACCTTG
AAAATGAACCTTTTAAACACTCAAAAATCTTAAAATATTTAAATTTGCTG
GGCAAATCTTTTAAACAATGTTCTATTCACAATTCTTTTGTACTGGCATA
ATTCTCTCCCTTTTCAAGAGAAAACTTCATATGATTAGGTGCCACTTACG
CACACTTACGCTCTTCACACTCTTCACGCTCTTCACTTTAGGCTGTTGGC
CTGTTAGTTTTCTACGGAAAAAAAAAGGAACAAAATCTGACATCTGGCAA
TCTCGACATTTTGATTAAAGGGTGTCATCAGCGATTTGCTTGACGGCATG
ATTATATTTTGTCACGTAAACTAAAATAAACTTTTAAACCATTTTTCTCT
TTTTCTTTATCTTGTAGGAAATGATCTACCAGCTCAAAAAATGCAAAATC
TCAAATCGGTTTTGGAAAGTCACTTTTGCCAAAGTGTAAAAGATGTAAGT
GTTATACATTGTTATGAAACATTTTTTGTCTCTCCTTTGTCAAAAGCCTG
TTTATTTATTGCCTTATTTGGCGAATTGCCTTCATTGAAAAATCTTAAAC
ATTACATTGGGCGTGGTGGACGTACTAAAGACGTTACCGCCTAATGAAAA
ATCCAAGGACATCTGTTATATGAACACGATACTTCAAGATACTTCTCTGA
AAAATATTTTCGTAGGTTTACGAACAAGTTTACGAGACGGTAGATTTCAA
TACAAATGATGAAGTACGTGCGAACGCAACAGCAAAGGTATGTTTTGACG
TCTATAACATTCACTACGTACAAGCACTATACGAAAATATTATTAGGTAT
ATTCTTCCCCAAAACTTGACGATTTTAGTTTCTGCTCAGCTTAGAATCCC
TAAAGAGTCTTGTAGAAAAAAACTGTTGTAATACTGCCACGTGCATATGA
TCTACTTAGCCTTCGGATTGGTTGAAAACAGTGCAAGAGTGTTTATCATA
GTACATAAACTTGTCTTTGATAACATTTCTGTTTTTTTTGTTATTATCGG
TCTGGCTGATTTCATGGTAAAAAAGGACAAGTTAAAAGTCTCTAAGAAGC
TTATTTTTGACCAATTTGTTTCTTTAGTTTTTATAACTCGAAATAATTAT
ATCTAGGCAACAGTAGCGGCATTTGCAGCGAGTGAAGGGCACGCACACCC
AAGAATTGTTGAATTACCAAAAACTGATGAAGGATTAGGATTTAACGTTA
TGGGAGGACTGGAACAAAATTCACCAATTTACATTTCCAGAATTATCCCT
GACGGTGTTGCTGATAGGTATATACGCTTTTAATTAAGAACCCGTAAAGT
TTGATCTCATAATAAATCATTCCTTCGGCCATTCTGCTTACACCACGCTC
TGCTTAAGGAAGGTGGCGAATGTGTTGATATGACCTGGTTGATTAAACAA
ACATTTGAACAAACGTTGCCTTTTGCTGATTCTCTAAGCCTTAGAGTGCA
CACATGTCAGCGTGAAGTAACCAGAATCTGCCCGGAGATGAGTAAATTTT
GGTTCAAATACGACTCTTTTTATTTTTACGAAAAAGTTAAGATGAAATGT
TCATTTATAATGAACATTATGCTCATTATGCTCTTTTTAGATGGAATTTA
CCCGAATCATGGTCCATAACCATATGAAACTCACCAAAAGTAGACTCTGA
TACTAATGAATTAGCCGTAAAAGTAGCATGGCTTGTAACGGCCCTCGCTT
TTATTACTTACACATTTTCCTTTACACTAATTTAGACATGGTGGTTTGAA
ACGTGGCGATCAACTGCTTGCAGTAAATGGTGTGGTAAGGGCATTTATTG
TTTTCTTTTTTTACTGTCAGTACCAGAGCAACTAAAGTGTTTGAATGAAA
TGATGAGATGCAAATTGGTTTTTGAGCAGAGGCTTGAAAAACTTTAACAT
TTAACTTTATTCAACAAAATCATCTCAAAACAGGATTTTATCCAGCGTAT
CTAATTATCAAACTCCAATAAACGTCCTTATACTTAACGCCCATAACGCC
CCTTATTATTACAGCACACTAAAAATGGAATCTCTTGAATTCANCGTGGT
AAGGGCATTTATTGTGTTGTTTTTTTATTGTCTGTACCAGAGCAACTAAA
GTATTCAAATGAAATGACGAAAACCTTTCACCTTTAACTTTATTCAATCT
ACACAATCATTTCGAGTCAGGATTTATCCAGCGTATCAAATTATCAATCG
CCAATAAACGTCCTTTATACTTATAACGCCCCTTATTATCACAGCATACT
AAAAATGGAATCTCTTCAATCCATTTTTCAATTTCCTTTTTTTTTGTAGA
ACGTTGAGGGGGAGCACCACGAGAAAGCTGTAGATTTATTGAAAGAGGCT
GTTGGAAGAGTCAAACTTGTCGTTAAATATACTCCCCAAGGTATTTTATG
AAATTGTTTACACAATTGTTCTTGATTATCTTCAGCGGATGTCTTGCGGA
CATGCAATGGTCACGTTTTAACACCAACATCTCTAATGAGGACTCACGTG
ACCTTTGCATTACTAATAATACATTGCTTTACTGACAGACCTTCGTACTT
CGAATTGCTCTGCACGTGTTTAAAAAATATTGTTTCGAAAATTCGTCAAT
TCGACAAATATAATGCTCTGTGTAAGCGCTCTATTTTACATCCGGGAAAG
AAAAAGTCCCTATAATTTCGAGTCCCTTTAGCTTCAAAAGATTTTCTTCT
GGGCCAGATTATTCTAAAAAAAAAAGTGAAGACCAAAAACAAAATTTTGT
TCATCCTTGACGTTTCGATATTTCTTGTATCATGATCATTGTAAGCTAAC
ATTTGCTTGTGATCATGATACAAGAAGTATCGAAACGTCAAGGATGAACA
AGATTTTGTTTTTTGTCTTCCCTTTAGCTTATACTTTTCCTATAAAGTTT
ATTCAACTTTAAAATAATATTCTTTAAGAAGAAAAGAGGAAATTATACTA
AATTACTAAAACTGTGACTTCGAGACAAAATATTGGGGTAAAAAGTTTGT
AATATGTCTTTTATGGGGAAAGAGACACCTCGTTGAAAAACAAGGGAAAA
AGGGGAAATGAAAGTTTTACTTTCTTTTTGTCCTGGAATTAGGATACTCA
CAATACAGATAGGTTTAGGCTAGTTTTCTTTATTATTTGGGGGACTCTTT
TGGGGGGTTTTCGTGTAGCAATTTCTGTTTTTCTTTCTCCCAATAACTTT
CAAATATATTTTTCGTTTACTTTTTTTTTCAGTTCTTGAAGAAATGGAGT
CACGTTTTGATCGTAGAAAGAAATGAGCTAGTGAATAATTTCGTGAAGGT
AAATTTCATTTTGCTCAATGATATTGTGTACACCTATCAGCCCTTATCAC
TTAACAAGGGAATTGGGATCAGCTTACAATGGTTAAATGGCGTCATAGTT
CTACCTGTGTGCTCGTCATTAGGTCATTTCACGGTCGAAATAAATAAATA
AATTTCAAACCAATAGACCTTTTCATAAATTACGTCACGAACATCACTTA
CCTCATTTTGAAATTATTGCCATTGTGATTAACTCCCAGCGGATTTTATT
AAAACTACTTTCTTAAGAAAAATCATGAATGTCATCAATGTCTCAAGGGA
CAATATCACCATGGAAATTGTTTGAATACGAGGCAAGTGATGTTCGTGAC
ATAATTTATGAAAAGGTCTATGGGAGGCCGTTTTGGGGCTAAAATAGTCC
TAATTATAAATTCATGATTCTTCATTTCGACTGTGAAATTGCCCTTTGAC
CCTCATATACTTATCCCTCTTTGAAAAACTTTCTGGTGAAAGGATTGATA
AAGTGCAGTTAATAAACCTTGCGTCTGTATAGCCCTCCACTACGTATTTA
AAATTCTAGTAATATTCTTTTCACACCTCATTTTTCTACAGTTGTCACGA
TTTACTTCACGACTTGTCAACAGGCTTTTTCTAGTCACCGAAATGTCTCA
TAACCAACACAATTATTCGTTTGTTGTCTGTTCTTTACCTTGCAAGGGTA
ATGCGTGATTTTTGCATTACAGTGATAAGGCTCAAAGAGCAAACTGCTGC
TCGTAATACTGTTTATACTTAGGCTACGTGGTAATGACACACCTTTTTTG
TATGTAATTATTTTAAAATGTTCTTCCCTACCTTGCAGGGGTTTTGTTGG
CTATTTCTTGGAAGAGAAAGTTGGACTTGATTTTATAAGTTATAACATTT
TTATAGTTTTCAATCTATTTATTAGTTTTTTTTAAATCGCTTTTAGCTCT
TTTTCATTCCCGTTGTGCGATTTGAAGTAGATTTATGAAGCTTACATTTC
GTCGTATTTAATGCGCCGCTTCTAGCATTAACAGCGTATTACTTTAAGTG
CTGCGGACTCCACAAAAAATCTTCCACTAAAGTCCTAAATATAGGACATT
GTTTGGAAGAAAAATACCCAGCTGGTACAGAACGTTATTTTGACGTCTTT
TTAATGTTTTTAGATTTTATTGGAGTAAGATAGACATTTCGTCCTAGTTG
GGTAGGATAAGGACATGGCTTCGACAAGTTTTTTATTCTCTTTGGGGCTT
CCTTTTTTTACTGAACAGTACTTTTTCTTGTTCATTGACAAGTGTGAAAA
CAGCAATTTGATTAATCATGTTATTTTGAAGATACCACAGTTTTTTACAA
GAATGAGAAGGTATGCCTGCTTTTTTCTAGAGTTTTAAGCAAAACTTATG
ACCTGTCAATATTTTAACTTTTCCATTATTTTTACGAATTATGAAATCAT
AGAACATGTTTTATATTTAGATAGCATTTTTTCTTTCAGCTGTCTAGATG
TCGATTTCTAGAAGCTTTCTTGAAACACTGCACTGCAATCTATAATTATA
CTTGAAGCTTTAAATAGCAGTAAATACATTTCTCGAATCTGGGTCCAATA
ACATTAAACACCTTTAAAGTTGGATTTTAGGTTAGAGACTTGAATCTTTA
TATTTGATAAAGTCATTGAGTTTTGATAAAATCTGATACATTTTTTAAAA
TTTACATTCTAACATCGGGCCTCTTACAAAAGTAACCTCCATATTTTTAT
CTTTATTCATCTGCAAGCC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_007140	XLOC_007140	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000147	supercontig	sc0000147:220729..226247 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.149069	0.146916	0.589077	0.335435	3.36884	2.10042	2.81025	1.73616	1.47853	2.85553	1.86229	0.604881	0.860069	0.589514	0.558487	0.792017	0.806233	1.40634	0.753308	0.843925	1.26286	2.38387	0.380315	0.748934	0.465165	0.413259	0.883954	1.96588	0.968835	1.19314

Blast

[Close]

BLAST of TCONS_00012729 vs. Swiss-Prot (Human)
Match: LIN7C (Protein lin-7 homolog C OS=Homo sapiens GN=LIN7C PE=1 SV=1)

HSP 1 Score: 255.373 bits (651), Expect = 2.357e-80
Identity = 134/187 (71.66%), Postives = 162/187 (86.63%), Query Frame = 2

Query:   65 MTDSARSLNLSSDIQRAIELLDELSQRNDLPAQKMQNLKSVLESHFCQSVKDVYEQVYETVDFNTNDEVRXXXXXXXXXXXXXXSEGHAHPRIVELPKTDEGLGFNVMGGLEQNSPIYISRIIPDGVADRHGGLKRGDQLLAVNGVNVEGEHHEKAVDLLKEAVGRVKLVVKYTPQVLEEMESRFDR 625
            M      + L  DI RAIELL++L +  ++P QK+Q L+ VL+S FC +V++VYE VYETVD +++ EVRANATAKATVAAFAASEGH+HPR+VELPKT+EGLGFN+MGG EQNSPIYISRIIP G+ADRHGGLKRGDQLL+VNGV+VEGEHHEKAV+LLK A G+VKLVV+YTP+VLEEMESRF++
Sbjct:    1 MAALGEPVRLERDICRAIELLEKLQRSGEVPPQKLQALQRVLQSEFCNAVREVYEHVYETVDISSSPEVRANATAKATVAAFAASEGHSHPRVVELPKTEEGLGFNIMGGKEQNSPIYISRIIPGGIADRHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAAQGKVKLVVRYTPKVLEEMESRFEK 187

The following BLAST results are available for this feature:

BLAST of TCONS_00012729 vs. Swiss-Prot (Human)

BLAST of TCONS_00012729 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
LIN7C	2.357e-80	71.66	Protein lin-7 homolog C OS=Homo sapiens GN=LIN7C P...	[more]

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TCONS_00012729 (transcript) - C. hemisphaerica