TCONS_00012727 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012727
Unique NameTCONS_00012727
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length757

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012727 ID=TCONS_00012727|Name=TCONS_00012727|organism=Clytia hemisphaerica|type=transcript|length=757bp
ttctttatacctccatgattgAAGTGACACACCTCATTTTCCAAGACGCA
CTGACCaattatcaaaattattttgtttgttaCTTCTTGTCCTTCTTTGG
TGAATCAAGACATATAATCActctaaaaacattttaaaagccTCTGTTGC
ATCTTGGGATTTGAGTTGTTACGGTAATTATGATGGGAATTATATTTAAC
GTGTGATACATTCTATTCCAAGCACCTCATTGGgtgaattttaaaacaag
tgAATAGTAAATCACATAATAGCTCTTATTATAAAGCCTCAGTATAAAAA
GAGACGAACGTTGGACTTTCAAATCAAACGAAAAGCAAATTTCAAGCGAA
GTATACAGTGCAATAGTGAAATTGCCAACAACAGCAATGGACATCAAAGT
ACTCATTTTATTCGCCGCGGTTTTGGCGATTGCTTATTCCTATCGCATAA
GCAATGACGACTCTAACACAGGAAGGGATTTCTACCAAGCACTACAAGAT
ATTATTGATGAACGTGTGGCAGAAAAAATGGATCCTAAACATGAATGTAA
ATTTGGAGGTCTATGTAACAATGTTTACAGCTACGGATGTCATAAGTATA
TGAGGAAATGTGATGGTTCAGGATGCACAGAAATTGGAACTTGCTGGCGT
CAATGTTACTCAAACTCGAAGACATGGTGTAGATTGTCAGACGAAGCCAG
ACGTGACAAATTCTTTTCTTGTCAAAAAGATTCAGATTGTGCATACACCA
GAGAAAA
Run BLAST on NCBI

protein sequence of TCONS_00012727-protein

>TCONS_00012727-protein ID=TCONS_00012727-protein|Name=TCONS_00012727-protein|organism=Clytia hemisphaerica|type=polypeptide|length=123bp
MDIKVLILFAAVLAIAYSYRISNDDSNTGRDFYQALQDIIDERVAEKMDP
KHECKFGGLCNNVYSYGCHKYMRKCDGSGCTEIGTCWRQCYSNSKTWCRL
SDEARRDKFFSCQKDSDCAYTRE
Run BLAST on NCBI

transcript from alignment at sc0000147:144281..146405-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012727 ID=TCONS_00012727|Name=TCONS_00012727|organism=Clytia hemisphaerica|type=transcript|length=2125bp|location=Sequence derived from alignment at sc0000147:144281..146405- (Clytia hemisphaerica)
TTCTTTATACCTCCATGATTGAAGTGACACACCTCATTTTCCAAGACGCA
CTGACCAATTATCAAAATTATTTTGTTTGTTACTTCTTGTCCTTCTTTGG
TGAATCAAGACATATAATCACTCTAAAAACATTTTAAAAGCCTCTGTTGC
ATCTTGGGATTTGAGTTGTTACGGTAATTATGATGGGAATTATATTTAAC
GTGTGATACATTCTATTCCAAGCACCTCATTGGGTGAATTTTAAAACAAG
TGAATAGTAAATCACATAATAGCTCTTATTATAAAGCCTCAGTATAAAAA
GAGACGAACGTTGGACTTTCAAATCAAACGAAAAGCAAATTTCAAGCGAA
GTATACAGTGCAATAGTGAAATTGCCAACAACAGTAAGTACACATTTATT
AATTAATCAGATTTTTGAAAGAANAGTGCAATAGTGAGATTGCCAACAAC
AGTAAGTACACATATATACCAATTAATCAGATTTTTGAAAGAACTGACTT
TTCCAAAGTTTTCTCACTACACTTTTTCAATAACTCCATAAGAAATCTGA
GTCTGAATCTGAGTGAAGAGATATTGAAACCAATTTTATAGTTCAGCAAA
ATATAAACCGAAATTTTTTCTTGATGTTTCGTTAGGCAATGGACATCAAA
GTACTCATTTTATTCGCCGCGGTTTTGGCGATTGCTTATTCCTATCGCAT
AAGCAATGACGACTCTAACACAGGAAGGGATTTCTACCAAGCACTACAAG
ATATTATTGATGAACGTGTGGCAGAAAAAATGGATCCTAAACATGAATGT
AAATTTGGAGGTCTATGTAACAATGTTTACAGCTACGGATGTCATAAGTA
TATGAGGAAATGTGATGGTTCAGGATGCACAGAAATTGTAAGTAACATTT
TGAAGCATTTTGGTTTTGCAGCTCTCTGTGAATGTATTTTGACTACTTGA
TTGAACCACTTTTGTATTGTCACACGTATGTACATTTACGTTAACTGTGC
CTGAAAAACNTACTTTTGTATTGTCACACATATGTACATTTACGTTAACT
GTGCCTGAAAAACTATTCTTGTTTTTCGAAGCACCCTTCTCCCTGGGATT
TCCCATATTAATTTCCGCCCATAATTTAGCAAGATCGCACGGAAGAAAAG
GGAAAGCAATCTATATATTAATACGCTAAAACGTGTGTGTTTACAGCGTT
TTGTAAAAAGTTTTCGAAATTCTAACAAAGCTCTACAAAGCCTACTCCTC
ACGGCGTTGAACCATCGTCTATTCGCACCTTATGCAGATTTCTTACCACT
GGATTAACTTTGAGACGCTAAGATACGATTTTCTATACAGGAACATCGGA
GCTGGATGGGTTAACATCAACCTTCCTCCCAAATATAATTTTCGCTGTTG
AAGAATTATTCNCTAACTTTGAGACGCTAAGATACTATTTTCTATACAGG
AACATCGGAGCTGGATGGGTTAACATCAACCTTCCTCCCAAATATAATTT
TCGCTGTTGAAGAATTATTCAAATGCTCTTTTAACTTTTTGTTTACAATA
GCCGCTCAAAACTTTTCAAAGTCTTTCAAAGTCTTTCAAAGTCTTTAAAA
TATAATTCTTCTAAGCCATTTACTTAATTGTGGTTAAAAATTGCAATGCA
ATGTTATCTTTTTTCTCCTTACTTTCATAAAATGAAACTCGTATCATAGT
TTTGGCAGCTATCTTTCTTCATTTATAGTTTTTTTATGTATAGTGATTTG
CTGGATTGGGACACGCAGCGTGCGACGCTGCGCATACGGCTAGTAGATTA
TATTATGAGGCTTAAACTGCGGTTTTAATCATGACGTCTTAAGAAACACT
TCGTGAGTGGCAAAATAACAGTTTAAACATTGTAGAAGCTAGAATTCGAT
ATTATGCCAAAACTACTGTAAAGTACTCGCATACATTAAGGTAACAATCA
TTTCACGAAGTTTAAGCATCCATATAATTTCCGTATAATTTTTGTAACTT
TAGGGAACTTGCTGGCGTCAATGTTACTCAAACTCGAAGACATGGTGTAG
ATTGTCAGACGAAGCCAGACGTGACAAATTCTTTTCTTGTCAAAAAGATT
CAGATTGTGCATACACCAGAGAAAA

Coding sequence (CDS) from alignment at sc0000147:144281..146405-

>TCONS_00012727 ID=TCONS_00012727|Name=TCONS_00012727|organism=Clytia hemisphaerica|type=CDS|length=738bp|location=Sequence derived from alignment at sc0000147:144281..146405- (Clytia hemisphaerica)
GGAACTTGCTGGCGTCAATGTTACTCAAACTCGAAGACATGGTGTAGATT
GTCAGACGAAGCCAGACGTGACAAATTCTTTTCTTGTCAAAAAGATTCAG
ATTGTGCATACACCAGAGAAATGGACATCAAAGTACTCATTTTATTCGCC
GCGGTTTTGGCGATTGCTTATTCCTATCGCATAAGCAATGACGACTCTAA
CACAGGAAGGGATTTCTACCAAGCACTACAAGATATTATTGATGAACGTG
TGGCAGAAAAAATGGATCCTAAACATGAATGTAAATTTGGAGGTCTATGT
AACAATGTTTACAGCTACGGATGTCATAAGTATATGAGGAAATGTGATGG
TTCAGGATGCACAGAAATTGGAACTTGCTGGCGTCAATGTTACTCAAACT
CGAAGACATGGTGTAGATTGTCAGACGAAGCCAGACGTGACAAATTCTTT
TCTTGTCAAAAAGATTCAGATTGTGCATACACCAGAGAAATGGACATCAA
AGTACTCATTTTATTCGCCGCGGTTTTGGCGATTGCTTATTCCTATCGCA
TAAGCAATGACGACTCTAACACAGGAAGGGATTTCTACCAAGCACTACAA
GATATTATTGATGAACGTGTGGCAGAAAAAATGGATCCTAAACATGAATG
TAAATTTGGAGGTCTATGTAACAATGTTTACAGCTACGGATGTCATAAGT
ATATGAGGAAATGTGATGGTTCAGGATGCACAGAAATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007138XLOC_007138Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012727-proteinTCONS_00012727-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012727-exon-sc0000147-1575043694:146023..146405TCONS_00012727-exon-sc0000147-1575043694:146023..146405Clytia hemisphaericaexon
TCONS_00012727-exon-sc0000147-1575043694:145519..145770TCONS_00012727-exon-sc0000147-1575043694:145519..145770Clytia hemisphaericaexon
TCONS_00012727-exon-sc0000147-1575043694:144281..144402TCONS_00012727-exon-sc0000147-1575043694:144281..144402Clytia hemisphaericaexon
TCONS_00012727-exon-sc0000147-1510915933:146023..146405TCONS_00012727-exon-sc0000147-1510915933:146023..146405Clytia hemisphaericaexon
TCONS_00012727-exon-sc0000147-1510915933:145519..145770TCONS_00012727-exon-sc0000147-1510915933:145519..145770Clytia hemisphaericaexon
TCONS_00012727-exon-sc0000147-1510915933:144281..144402TCONS_00012727-exon-sc0000147-1510915933:144281..144402Clytia hemisphaericaexon
TCONS_00012727-exon-sc0000147-1491911889:146023..146405TCONS_00012727-exon-sc0000147-1491911889:146023..146405Clytia hemisphaericaexon
TCONS_00012727-exon-sc0000147-1491911889:145519..145770TCONS_00012727-exon-sc0000147-1491911889:145519..145770Clytia hemisphaericaexon
TCONS_00012727-exon-sc0000147-1491911889:144281..144402TCONS_00012727-exon-sc0000147-1491911889:144281..144402Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000147supercontigsc0000147:144281..146405 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.20127	6.51204	3.51803	5.46757	2247.19	1822.97	4707.04	3930.85	2471.44	2683.17	1859.96	2226.82	1.01985	0.725694	0	0	0.484768	0.69378	6.9754	0	1.04708	1.59416	0.564555	0.500484	0.115403	0	0	0	0.784904	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00012727 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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