TCONS_00012726 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012726
Unique NameTCONS_00012726
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length445

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012726 ID=TCONS_00012726|Name=TCONS_00012726|organism=Clytia hemisphaerica|type=transcript|length=445bp
ATCTCATGATTTTGTTGAGGCCTGGACCCTACATTGATTCTGAATGGGAA
TATGGCGGTTTTCCTTATTGGATGAGCAGCAAAGTTGGAAAATTGATCTG
AACTTCAGACCAAGGATATCTCAATCTTGTTGACAAATGGTTTTCTGTTT
TGCTACCGAAAGTTAAACCACTTTTATATGAAAACGGAGGACCTATTATT
GGTGTTCAGGTTGAAAATGAATATGGTAGTTATGGTTGTGATGAAAAATA
CATGTTAGCAATGGAACAAATGTTAAGAAAATATCTCAGTCAAAAAGTCT
TTCTATACACCACAGACCCTATCATTGATCAAGCTTTACAGTGTGGTTCA
ATTTCATCCTTGTATAGAACAGTCGATTTCGGAGCAGGTCATGATGTGAA
TAAGTCGTTTGCACTGCAAAGGAAATATCAGCCGAAAGGACCCTA
Run BLAST on NCBI

transcript from alignment at sc0000147:119857..120744-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012726 ID=TCONS_00012726|Name=TCONS_00012726|organism=Clytia hemisphaerica|type=transcript|length=888bp|location=Sequence derived from alignment at sc0000147:119857..120744- (Clytia hemisphaerica)
ATCTCATGATTTTGTTGAGGCCTGGACCCTACATTGATTCTGAATGGGAA
TATGGCGGTTTTCCTTATTGGATGAGCAGCAAAGTTGGAAAATTGATCTG
AACTTCAGACCAAGGATATCTCAATCTTGTTGACAAATGGTTTTCTGTTT
TGCTACCGAAAGTTAAACCACTTTTATATGAAAACGGAGGACCTATTATT
GGTGTTCAGGTAATTGATAAAAGTTTTCCCCTTTGAGCTCCAAGTAGGAA
AAATATCACTGGTTAAGATAGTTGACGGTAAAAAAGGGAGTAATTTAATT
AAACCGCGTCGTTGTATTTCGCTATTACAATCTTCGTCTTTTTTTCTCAG
GTTGAAAATGAATATGGTAGTTATGGTTGTGATGAAAAATACATGTTAGC
AATGGAACAAATGTTAAGAAAATATCTCAGTCAAAAAGTCTTTCTATACA
CCACAGACCCTATCATTGATCAAGCTTTACAGTGTGGTTCAATTTCATCC
TTGTATAGAACAGTCGATTTCGGAGCAGGTCATGATGTGAATAAGTCGTT
TGCACTGCAAAGGAAATATCAGCCGAAAGGACCCTATGTAAGACCACCCT
TTCTTTTACCTTCAAGTATGACAGAGACTACATTGCGCAACGCGTCTGAA
TTCATTTTGGTCTTCCATTTCCATTGGGTGGCATTTAGCCCTTTATCGTT
ATTCCGATCACTGGAACACTTGTATCCAGTCCTTTAAATCGCGTTTTTGA
TTTTTCTGACATAGTGCTCATGATAGTACTAACATCCATCAGAAAAATAA
AAAAGTGGTGCAAATGGCTCTGGGTTAGGTTGGGTAGCATATTACCTACC
AAAACCTCTCACTCAGCAATTCTTGCTTATATTTTACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007137XLOC_007137Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012726-exon-sc0000147-1575043694:120536..120744TCONS_00012726-exon-sc0000147-1575043694:120536..120744Clytia hemisphaericaexon
TCONS_00012726-exon-sc0000147-1575043694:120160..120394TCONS_00012726-exon-sc0000147-1575043694:120160..120394Clytia hemisphaericaexon
TCONS_00012726-exon-sc0000147-1575043694:119857..119857TCONS_00012726-exon-sc0000147-1575043694:119857..119857Clytia hemisphaericaexon
TCONS_00012726-exon-sc0000147-1510915933:120536..120744TCONS_00012726-exon-sc0000147-1510915933:120536..120744Clytia hemisphaericaexon
TCONS_00012726-exon-sc0000147-1510915933:120160..120394TCONS_00012726-exon-sc0000147-1510915933:120160..120394Clytia hemisphaericaexon
TCONS_00012726-exon-sc0000147-1510915933:119857..119857TCONS_00012726-exon-sc0000147-1510915933:119857..119857Clytia hemisphaericaexon
TCONS_00012726-exon-sc0000147-1491911889:120536..120744TCONS_00012726-exon-sc0000147-1491911889:120536..120744Clytia hemisphaericaexon
TCONS_00012726-exon-sc0000147-1491911889:120160..120394TCONS_00012726-exon-sc0000147-1491911889:120160..120394Clytia hemisphaericaexon
TCONS_00012726-exon-sc0000147-1491911889:119857..119857TCONS_00012726-exon-sc0000147-1491911889:119857..119857Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000147supercontigsc0000147:119857..120744 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
15.1958	10.4699	6.99166	5.47525	1.97578	1.32213	0.630725	0.0421232	0	0	0	0	0.956284	0	0.67087	4.48961	0	2.18698	3.9005	0	3.87827	0	3.74646	6.95547	1.63314	6.42934	1.10823	1.93686	11.2353	4.40309
Blast
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BLAST of TCONS_00012726 vs. Swiss-Prot (Human)
Match: BGAL (Beta-galactosidase OS=Homo sapiens GN=GLB1 PE=1 SV=2)

HSP 1 Score: 165.622 bits (418), Expect = 3.602e-48
Identity = 79/148 (53.38%), Postives = 102/148 (68.92%), Query Frame = 3 
Query:    3 LMILLRPGPYIDSEWEYGGFPYWMSSKVGKLI*TSDQGYLNLVDKWFSVLLPKVKPLLYENGGPIIGVQVENEYGSY-GCDEKYMLAMEQMLRKYLSQKVFLYTTDPIIDQALQCGSISSLYRTVDFGAGHDVNKSFALQRKYQPKGP 443
            L+++LRPGPYI +EWE GG P W+  K   L+ +SD  YL  VDKW  VLLPK+KPLLY+NGGP+I VQVENEYGSY  CD  Y+  +++  R +L   V L+TTD      L+CG++  LY TVDFG G ++  +F  QRK +PKGP
Sbjct:  116 LLVILRPGPYICAEWEMGGLPAWLLEKESILLRSSDPDYLAAVDKWLGVLLPKMKPLLYQNGGPVITVQVENEYGSYFACDFDYLRFLQKRFRHHLGDDVVLFTTDGAHKTFLKCGALQGLYTTVDFGTGSNITDAFLSQRKCEPKGP 263
The following BLAST results are available for this feature:
BLAST of TCONS_00012726 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
BGAL3.602e-4853.38Beta-galactosidase OS=Homo sapiens GN=GLB1 PE=1 SV... [more]
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