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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012694 ID=TCONS_00012694|Name=TCONS_00012694|organism=Clytia hemisphaerica|type=transcript|length=1232bp
aACAATAAAGTGCCAAAGGTTCAAGTTTCGatcattttgatttattttaa
ttCGATTTCAAGTTTAGTCTGAAGATGTTCACTTTTGAGAAATTGTACAA
AGAAGATCAAGCTATACAAACCCTTTTACTTATCAGCCAAAACGAGGAAA
AGGGTATTTCGGCACATCCAGAATTTCCAGTTCCGCACATAGAAAGTATT
AATCAAAGTGTAAAGAAAAGACAGAAGGCTGCAGCAGAGGAAGACTACCA
GGTGTTGAGCCCATGGGAAGGCTCCGAAAATgagaaactttcaaaaccaA
ATAATCAGGATGGAAAGGACCAAAAGCGTGTGTCCAAAACACGTGATTCA
AATTCAACCAATAAGCGTACACCTAGATTCAGAGGCGGTAAATTAAACTC
AAGTTCATCAACAGCAGATGAGAAATTCCAATTCTGTCATTTTGACGAAT
CAAAAGAACATATTACTCACTATCGAGAAGTCGTTACTTTTTCAACAATA
CTCGATTATCGGAATGGCATTTCAAATACTTCAATCCCAAACCATTCTGG
AGgaaactgtaaaaaatgtgataGCGACGGAATTTTAAAACAGTGTCAAT
GTTCCGGCGGAACTCCTTCTTCATCCGGTGTCTACTATGTAGAAACTTCA
GACACCGTTAAAAGACATAATATTCTTGCAGCTATGGAAAGTCTAAGTCG
AAACTCGTCTGCTGATGAGACAACGTTGTATCGAAATCGTAAATGTTCTA
GTAAAGATCGGTTATGCCGTAAAACTTCAACGTCTACAGGAAAATTATGG
AAATCGGCCGCTGCAAAGATTCCCAATAGAACACCGACAGGACCCTTGAA
AAGTATACAGAGTTTCGCATCTTGCAAACATAAATCCTGCACTAAGACAA
AGacGCGCGACATTCGAATTAAGACTGGAAACGAGTCAACAGAAGCATTA
CGTATTTACACTTCACCGAAAGCCTACGGACCGCGTATGGGAAGTAACCG
ACCACCCCTTAACGACGCTAGCGAAATCCGAGGcggaacacccccttctc
agcTTATTAATTGTTTACGACCTAAAGTCCCTCAAGCAGCTATTCCTAAT
AAAAACACATCATTTCAAGCTTGTATTATGCCCATGAACAAACACACAAC
ACATGTTAGTGTAGGTAGTAATATAAGCAAAACGCCCtaaattcatttta
aatgattttagtTTCTAGCAAATATACCAACA Run BLAST on NCBI protein sequence of TCONS_00012694-protein >TCONS_00012694-protein ID=TCONS_00012694-protein|Name=TCONS_00012694-protein|organism=Clytia hemisphaerica|type=polypeptide|length=371bp
MFTFEKLYKEDQAIQTLLLISQNEEKGISAHPEFPVPHIESINQSVKKRQ
KAAAEEDYQVLSPWEGSENEKLSKPNNQDGKDQKRVSKTRDSNSTNKRTP
RFRGGKLNSSSSTADEKFQFCHFDESKEHITHYREVVTFSTILDYRNGIS
NTSIPNHSGGNCKKCDSDGILKQCQCSGGTPSSSGVYYVETSDTVKRHNI
LAAMESLSRNSSADETTLYRNRKCSSKDRLCRKTSTSTGKLWKSAAAKIP
NRTPTGPLKSIQSFASCKHKSCTKTKTRDIRIKTGNESTEALRIYTSPKA
YGPRMGSNRPPLNDASEIRGGTPPSQLINCLRPKVPQAAIPNKNTSFQAC
IMPMNKHTTHVSVGSNISKTP Run BLAST on NCBI transcript from alignment at sc0000147:349504..351159+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012694 ID=TCONS_00012694|Name=TCONS_00012694|organism=Clytia hemisphaerica|type=transcript|length=1656bp|location=Sequence derived from alignment at sc0000147:349504..351159+ (Clytia hemisphaerica)
aACAATAAAGTGCCAAAGGTTCAAGTTTCGatcattttgatttattttaa
ttCGATTTCAAGTTTAGTCTGAAGATGTTCACTTTTGAGAAATTGTACAA
AGAAGATCAAGCTATACAAACCCTTTTACTTATCAGCCAAAACGAGGAAA
AGGGTATTTCGGCACATCCAGAATTTCCAGTTCCGCACATAGAAAGTATT
AATCAAAGTGTAAAGAAAAGACAGAAGGCTGCAGCAGAGGAAGACTACCA
GGTGTTGAGCCCATGGGAAGGCTCCGAAAATgagaaactttcaaaaccaA
ATAATCAGGATGGAAAGGACCAAAAGCGTGTGTCCAAAACACGTGATTCA
AATTCAACCAATAAGCGTACACCTAGATTCAGAGGCGGTAAATTAAACTC
AAGTTCATCAACAGCAGATGAGAAATTCCAATTCTGTCATTTTGACGAAT
CAAAAGAACATATTACTCACTATCGAGAAGTCGTTACTTTTTCAACAATA
CTCGATTATCGGAATGGCATTTCAAATACTTCAATCCCAAACCATTCTGG
AGgaaactgtaaaaaatgtgataGCGACGGAATTTTAAAACAGTGTCAAT
GTTCCGGCGGAACTCCTTCTTCATCCGGTGTCTACTATGTAGAAACTTCA
GACACCGTTAAAAGACATAATATTCTTGCAGCTATGGAAAGTCTAAGTCG
AAACTCGTCTGCTGATGAGACAACGTTGTATCGAAATCGTAAATGTTCTA
GTAAAGATCGGTTATGCCGTAAAACTTCAACGTCTACAGGAAAATTATGG
AAATCGGCCGCTGCAAAGATTCCCAATAGAACACCGACAGGACCCTTGAA
AAGTATACAGAGTTTCGCATCTTGCAAACATAAATCCTGCACTAAGACAA
AGGTATgtatatttttgttcaatttgtaTGTAGCTTTTAAGCCATAACTT
TTACTTATTTTAATAGGATTAATTTTCGTTGGGATTAGATTTCTAGGTTG
AGCTCTTCCatgaaattttaatatttcCCGGGGACTTTAATTTCACGGAT
GACTTTATTATGAGataatattttcatgattttgtgctttttttgctgtt
ttactttaggacttattttcgcggatgaaaACCGAATCCGCggaattcgc
gaaatttaatacccgtgaaaattaatctcattaaagtaaaagtaaaaata
cCTTTTCCCTCCAAATTGTCTATGTAACTTTTAGGGTAAAAAATGTTGCT
ATATTGGTGAGAAAATAGCTTAGAAGTCAATAATGAGTCACTACTTTATC
ATTTTcgtatatttttgattttatagacGCGCGACATTCGAATTAAGACT
GGAAACGAGTCAACAGAAGCATTACGTATTTACACTTCACCGAAAGCCTA
CGGACCGCGTATGGGAAGTAACCGACCACCCCTTAACGACGCTAGCGAAA
TCCGAGGcggaacacccccttctcagcTTATTAATTGTTTACGACCTAAA
GTCCCTCAAGCAGCTATTCCTAATAAAAACACATCATTTCAAGCTTGTAT
TATGCCCATGAACAAACACACAACACATGTTAGTGTAGGTAGTAATATAA
GCAAAACGCCCtaaattcattttaaatgattttagtTTCTAGCAAATATA
CCAACA Coding sequence (CDS) from alignment at sc0000147:349504..351159+ >TCONS_00012694 ID=TCONS_00012694|Name=TCONS_00012694|organism=Clytia hemisphaerica|type=CDS|length=2232bp|location=Sequence derived from alignment at sc0000147:349504..351159+ (Clytia hemisphaerica)
ATGTTCACTTTTGAGAAATTGTACAAAGAAGATCAAGCTATACAAACCCT
TTTACTTATCAGCCAAAACGAGGAAAAGGGTATTTCGGCACATCCAGAAT
TTCCAGTTCCGCACATAGAAAGTATTAATCAAAGTGTAAAGAAAAGACAG
AAGGCTGCAGCAGAGGAAGACTACCAGGTGTTGAGCCCATGGGAAGGCTC
CGAAAATgagaaactttcaaaaccaAATAATCAGGATGGAAAGGACCAAA
AGCGTGTGTCCAAAACACGTGATTCAAATTCAACCAATAAGCGTACACCT
AGATTCAGAGGCGGTAAATTAAACTCAAGTTCATCAACAGCAGATGAGAA
ATTCCAATTCTGTCATTTTGACGAATCAAAAGAACATATTACTCACTATC
GAGAAGTCGTTACTTTTTCAACAATACTCGATTATCGGAATGGCATTTCA
AATACTTCAATCCCAAACCATTCTGGAGgaaactgtaaaaaatgtgataG
CGACGGAATTTTAAAACAGTGTCAATGTTCCGGCGGAACTCCTTCTTCAT
CCGGTGTCTACTATGTAGAAACTTCAGACACCGTTAAAAGACATAATATT
CTTGCAGCTATGGAAAGTCTAAGTCGAAACTCGTCTGCTGATGAGACAAC
GTTGTATCGAAATCGTAAATGTTCTAGTAAAGATCGGTTATGCCGTAAAA
CTTCAACGTCTACAGGAAAATTATGGAAATCGGCCGCTGCAAAGATTCCC
AATAGAACACCGACAGGACCCTTGAAAAGTATACAGAGTTTCGCATCTTG
CAAACATAAATCCTGCACTAAGACAAAGacGCGCGACATTCGAATTAAGA
CTGGAAACGAGTCAACAGAAGCATTACGTATTTACACTTCACCGAAAGCC
TACGGACCGCGTATGGGAAGTAACCGACCACCCCTTAACGACGCTAGCGA
AATCCGAGGcggaacacccccttctcagcTTATTAATTGTTTACGACCTA
AAGTCCCTCAAGCAGCTATTCCTAATAAAAACACATCATTTCAAGCTTGT
ATTATGCCCATGAACAAACACACAACACATGTTAGTGTAGGTAGTAATAT
AAGCAAAACGCCCtaaATGTTCACTTTTGAGAAATTGTACAAAGAAGATC
AAGCTATACAAACCCTTTTACTTATCAGCCAAAACGAGGAAAAGGGTATT
TCGGCACATCCAGAATTTCCAGTTCCGCACATAGAAAGTATTAATCAAAG
TGTAAAGAAAAGACAGAAGGCTGCAGCAGAGGAAGACTACCAGGTGTTGA
GCCCATGGGAAGGCTCCGAAAATgagaaactttcaaaaccaAATAATCAG
GATGGAAAGGACCAAAAGCGTGTGTCCAAAACACGTGATTCAAATTCAAC
CAATAAGCGTACACCTAGATTCAGAGGCGGTAAATTAAACTCAAGTTCAT
CAACAGCAGATGAGAAATTCCAATTCTGTCATTTTGACGAATCAAAAGAA
CATATTACTCACTATCGAGAAGTCGTTACTTTTTCAACAATACTCGATTA
TCGGAATGGCATTTCAAATACTTCAATCCCAAACCATTCTGGAGgaaact
gtaaaaaatgtgataGCGACGGAATTTTAAAACAGTGTCAATGTTCCGGC
GGAACTCCTTCTTCATCCGGTGTCTACTATGTAGAAACTTCAGACACCGT
TAAAAGACATAATATTCTTGCAGCTATGGAAAGTCTAAGTCGAAACTCGT
CTGCTGATGAGACAACGTTGTATCGAAATCGTAAATGTTCTAGTAAAGAT
CGGTTATGCCGTAAAACTTCAACGTCTACAGGAAAATTATGGAAATCGGC
CGCTGCAAAGATTCCCAATAGAACACCGACAGGACCCTTGAAAAGTATAC
AGAGTTTCGCATCTTGCAAACATAAATCCTGCACTAAGACAAAGacGCGC
GACATTCGAATTAAGACTGGAAACGAGTCAACAGAAGCATTACGTATTTA
CACTTCACCGAAAGCCTACGGACCGCGTATGGGAAGTAACCGACCACCCC
TTAACGACGCTAGCGAAATCCGAGGcggaacacccccttctcagcTTATT
AATTGTTTACGACCTAAAGTCCCTCAAGCAGCTATTCCTAATAAAAACAC
ATCATTTCAAGCTTGTATTATGCCCATGAACAAACACACAACACATGTTA
GTGTAGGTAGTAATATAAGCAAAACGCCCtaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012694-exon-sc0000147-1491911889:349504..350405 | TCONS_00012694-exon-sc0000147-1491911889:349504..350405 | Clytia hemisphaerica | exon |
| TCONS_00012694-exon-sc0000147-1510915933:349504..350405 | TCONS_00012694-exon-sc0000147-1510915933:349504..350405 | Clytia hemisphaerica | exon |
| TCONS_00012694-exon-sc0000147-1575043694:349504..350405 | TCONS_00012694-exon-sc0000147-1575043694:349504..350405 | Clytia hemisphaerica | exon |
| TCONS_00012694-exon-sc0000147-1491911889:350830..351159 | TCONS_00012694-exon-sc0000147-1491911889:350830..351159 | Clytia hemisphaerica | exon |
| TCONS_00012694-exon-sc0000147-1510915933:350830..351159 | TCONS_00012694-exon-sc0000147-1510915933:350830..351159 | Clytia hemisphaerica | exon |
| TCONS_00012694-exon-sc0000147-1575043694:350830..351159 | TCONS_00012694-exon-sc0000147-1575043694:350830..351159 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000147 | supercontig | sc0000147:349504..351159 + |
Blast
The following BLAST results are available for this feature:
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