TCONS_00012686 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00012686
Unique Name	TCONS_00012686
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	700

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000147:305343..308313+
coding sequence from alignment at sc0000147:305343..308313+

transcript sequence

>TCONS_00012686 ID=TCONS_00012686|Name=TCONS_00012686|organism=Clytia hemisphaerica|type=transcript|length=700bp
CNGCAACCAGCACCTTCTTCAGGTGACAAGAAGAATGAGAAAGCAAAAGC
TTCCAACGAGAACAAGAAAGACAAGAAGAAAGccaacaaagaaaataaag
caCCAAAAGCAGCGGCAGAGGGCGCAAAACCAATCGATGTTTCACGATTG
AACTTGAAAATTGGAAAGATCATTGATGTGAAACGACATCCTGATGCTGA
TGGTCTGTTCATGGAAACAGTGGAATTTGGTGAAGAAAAGCCGAGGACAA
TTTTGAGTGGTTTGGTAAAACATTATACTCTGGAACAAATGAAGgatcGA
ACAGCCATCTTTTTATGCAATCTCAAACCACAAAAGATGAGAGGCATTGC
ATCGGAAGGAATGATCATGTGTGCGTCCACACCAGAAAAAGTGGAAATCA
TCACGCCACCCGAAGGTGCTGCTATTGGCGATCGTGTTATCTGTCCGCAA
TTTGCCGGTGAACCTGATGGACAACTTAATCCAAAGAAAAAGATTTGGGA
GCAAGTTGCACCAGACCTTGCCGTCGACGATGAAGGATTTGCTTCGTACA
AAGGGAACTCACTTGTCATCGAGGGTAAAGGAAAATGTAAAGCACCTACA
ATGACAAAATGTCCCATCAAATAATctagattttgttttgtttatacaGA
AAGTTTTATATTGAAGAATATGAGATGTACTATTTGACTAAACCtataat

Run BLAST on NCBI

protein sequence of TCONS_00012686-protein

>TCONS_00012686-protein ID=TCONS_00012686-protein|Name=TCONS_00012686-protein|organism=Clytia hemisphaerica|type=polypeptide|length=207bp
XQPAPSSGDKKNEKAKASNENKKDKKKANKENKAPKAAAEGAKPIDVSRL
NLKIGKIIDVKRHPDADGLFMETVEFGEEKPRTILSGLVKHYTLEQMKDR
TAIFLCNLKPQKMRGIASEGMIMCASTPEKVEIITPPEGAAIGDRVICPQ
FAGEPDGQLNPKKKIWEQVAPDLAVDDEGFASYKGNSLVIEGKGKCKAPT
MTKCPIK

Run BLAST on NCBI

transcript from alignment at sc0000147:305343..308313+

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00012686 ID=TCONS_00012686|Name=TCONS_00012686|organism=Clytia hemisphaerica|type=transcript|length=2971bp|location=Sequence derived from alignment at sc0000147:305343..308313+ (Clytia hemisphaerica)
CNGCAACCAGCACCTTCTTCAGGTGACAAGAAGAATGAGAAAGCAAAAGC
TTCCAACGAGAACAAGAAAGACAAGAAGAAAGccaacaaagaaaataaag
caCCAAAAGCAGCGGCAGGTAGGTTTATTGCAGTATATGATATAAATACC
CCTTTTCAAAGACACTGGGCTGCTTTTGTTCGGATTTCTTTGGTTAAAGT
TCTGGCAGTGATTTTAGTGATATTGTTATTAAATAATAAGTTGATTCATT
TTGAGGGGGGGGttaaatttgtcgaatttgccGATTTTCAGCAAAAAACT
TTCCCAATTTTTAAACCCCGccaaatattgtattttttgccATGCCAACA
AAAATCCATGCCAAAATTAACTTCTTGAGTCCCCTATACAATCCTAGTCC
GAAAATCTCTATAGAACCTCTCTACTTTCTTCGTCTTTCTACAGCCCAAC
CATTAGTAGAATCTCAAGTCACCGATTGATTATTCGATATAAGTCGATGC
CGAAAGTATAGATTTTTTATCTGCTATGCTTATTTCAGAGGGCGCAAAAC
CAATCGATGTTTCACGATTGAACTTGAAAATTGGAAAGATCATTGATGTG
AAACGACATCCTGATGCTGATGGTCTGTTCATGGAAACAGGTGCGCTCAA
TATTTCATAAAATGATGCAcattataagattttattaGTTACCTGTAACC
TTTTCTTGTTTACAACGATTATCGATGCTACTTACGACTGTGTAATATCA
CATCAGTTATTGCACGGTCCTGCAAACCTGATTCATAATCATTTGACCCT
AATAAGTTTGAACCTTAGTTTTAAATCGGTTTGAGCCTgggtatgcttat
aagcgtaaTGCTTCATAAAAGCGTGAAAATTGTCATTGTTCGTGGATTCA
TGGTGAAAATTCAGACAACTATTCTATGGGTCTTGTGGTGTCCTTTGTTC
CAACGTTTGTGCATGAAATATAACGCTACTCTTTTACTGTCTTTTTAGTG
GAATTTGGTGAAGAAAAGCCGAGGACAATTTTGAGTGGTTTGGTAAAACA
TTATACTCTGGAACAAATGAAGGTGAGAGCTTCCCAATTTCGAAAGTCAA
CATAGGGTTTTATGTTCAGTATAATTTTTTATACTCTGTCTTAGTGACCC
AGTGAGAATTCTGTTAGCCGTTAAAGCTTTGAATCCATCAAAGTAACAAA
GTCATATTTTCTTGtccttttcattttcaggatcGAACAGCCATCTTTTT
ATGCAATCTCAAACCACAAAAGTAAGTACACtatagtttaatttttcaaa
attcaaaccaATTTTTAACTATACTGTTACAAAGTGTGCACTAGGGTCCG
ACATTTCACCtctaatttttttaaacccCAACACTCAAAAAAAACCCCTG
ACCTGAAACTTCACCTCAAATGTCCAATCTAAAAATACGCTTGATTTGAT
TGAGATGATGTTCTTAAGATATAACCTTAATATAATGCTATTGGTTCTTG
GCATTATTTGAGTTTATTAAGATTtagtttaatttatttttatggAGAGA
TTATGACAATTGAAAAGCTCCGATTTTCGTACATCACGTGTAACCTTTTC
GCtgtaaaacatttttcttttgactatgGAAATTTTCGAGCTGAAGCTCT
TTTTTATCTGGTTATTCCCTTAACGACCAGTTATGGATGGCTGTGTTACC
AGTAACGACAATGACCGCCAACTACAGTACAAGAAATCGGAAATTAGCTC
TTGTTCTATGattaataaaatgttttcaaggAGTTTACTGAAACTTTATC
TTCTAAGGAGAGTTTCTTTCCCCTTCACCACTTTACAGGATGAGAGGCAT
TGCATCGGAAGGAATGATCATGTGTGCGTCCACACCAGAAAAAGTGGAAA
TCATCACGCCACCCGAAGGTGCTGCTATTGGCGATCGTGTTATCTGTCCG
CAATTTGCCGGTAAGAATTCTCATGGCTGCACCTAAATTCGTTTGCCCTA
ATTTGAGAATATCGTCTGCAATGTTTTCAATGCTCTTGATTATTTTTCCA
TATTTGTATTTCTTGTTTGTAAAAGTCAAACTTATAGCCAAGACCTACTA
CGTTGTCAATGTAAAGAGTTGATTCAGTCTTTGATTTTATGCATCTTTAT
ACTTTCTAACAGGTGAACCTGATGGACAACTTAATCCAAAGAAAAAGGTA
AACAACTTCTTTAAATTTCAGTTTCCGATTCAGATCCCGAAAATCCCTCT
GATATAATTTTGTCCTACCAAGTTCTTTCCAGATCCAGACCATTTAATAT
TCTTCAAAGCAATCATTCGCTTTTTTACCAATAGTTTCGATTTTGTTCTA
AAAGCAAGCCTATATTTTTTTCCGTGtttcaaaagaacaaaaacgTTGCA
ATGCGAATGAAGGCTATAGGAATCCTCCCTTCATCTACTTATGCTTTTAT
CTACCGTTTTTAGCCatctatttttttctaaaacggAGACGGTAGCTTTa
aatttgtctagatcctgattgacTCAGGACACCTTCTTTTTGCGGATCAA
AACTGTTTGTTGTTCCAAATCATTTCAGTCACATCGCCGTACTAGAAAAT
ACGGATATGTTAACCTGCCTTTAACTCAACTACTAATACTCAGACCCTCA
CTGATCGAAACTGGAATGGGCAATcctatttgttcgaattatagaaagat
tcgaatgataGAAGTTAAAAAAGTGAGAGTCTACTGTAACTTgcaacttc
attttttctgtaGATTTGGGAGCAAGTTGCACCAGACCTTGCCGTCGACG
ATGAAGGATTTGCTTCGTACAAAGGGAACTCACTTGTCATCGAGGGTAAA
GGAAAATGTAAAGCACCTACAATGACAAAATGTCCCATCAAATAATctag
attttgttttgtttatacaGAAAGTTTTATATTGAAGAATATGAGATGTA
CTATTTGACTAAACCtataat

Coding sequence (CDS) from alignment at sc0000147:305343..308313+

>TCONS_00012686 ID=TCONS_00012686|Name=TCONS_00012686|organism=Clytia hemisphaerica|type=CDS|length=4368bp|location=Sequence derived from alignment at sc0000147:305343..308313+ (Clytia hemisphaerica)
CNGCAACCAGCACCTTCTTCAGGTGACAAGAAGAATGAGAAAGCAAAAGC
TTCCAACGAGAACAAGAAAGACAAGAAGAAAGccaacaaagaaaataaag
caCCAAAAGCAGCGGCAGAGGGCGCAAAACCAATCGATGTTTCACGATTG
AACTTGAAAATTGGAAAGATCATTGATGTGAAACGACATCCTGATGCTGA
TGGTCTGTTCATGGAAACAGTGGAATTTGGTGAAGAAAAGCCGAGGACAA
TTTTGAGTGGTTTGGTAAAACATTATACTCTGGAACAAATGAAGgatcGA
ACAGCCATCTTTTTATGCAATCTCAAACCACAAAAGATGAGAGGCATTGC
ATCGGAAGGAATGATCATGTGTGCGTCCACACCAGAAAAAGTGGAAATCA
TCACGCCACCCGAAGGTGCTGCTATTGGCGATCGTGTTATCTGTCCGCAA
TTTGCCGGTGAACCTGATGGACAACTTAATCCAAAGAAAAAGATTTGGGA
GCAAGTTGCACCAGACCTTGCCGTCGACGATGAAGGATTTGCTTCGTACA
AAGGGAACTCACTTGTCATCGAGGGTAAAGGAAAATGTAAAGCACCTACA
ATGACAAAATGTCCCATCAAATAACNGCAACCAGCACCTTCTTCAGGTGA
CAAGAAGAATGAGAAAGCAAAAGCTTCCAACGAGAACAAGAAAGACAAGA
AGAAAGccaacaaagaaaataaagcaCCAAAAGCAGCGGCAGAGGGCGCA
AAACCAATCGATGTTTCACGATTGAACTTGAAAATTGGAAAGATCATTGA
TGTGAAACGACATCCTGATGCTGATGGTCTGTTCATGGAAACAGTGGAAT
TTGGTGAAGAAAAGCCGAGGACAATTTTGAGTGGTTTGGTAAAACATTAT
ACTCTGGAACAAATGAAGgatcGAACAGCCATCTTTTTATGCAATCTCAA
ACCACAAAAGATGAGAGGCATTGCATCGGAAGGAATGATCATGTGTGCGT
CCACACCAGAAAAAGTGGAAATCATCACGCCACCCGAAGGTGCTGCTATT
GGCGATCGTGTTATCTGTCCGCAATTTGCCGGTGAACCTGATGGACAACT
TAATCCAAAGAAAAAGATTTGGGAGCAAGTTGCACCAGACCTTGCCGTCG
ACGATGAAGGATTTGCTTCGTACAAAGGGAACTCACTTGTCATCGAGGGT
AAAGGAAAATGTAAAGCACCTACAATGACAAAATGTCCCATCAAATAACN
GCAACCAGCACCTTCTTCAGGTGACAAGAAGAATGAGAAAGCAAAAGCTT
CCAACGAGAACAAGAAAGACAAGAAGAAAGccaacaaagaaaataaagca
CCAAAAGCAGCGGCAGAGGGCGCAAAACCAATCGATGTTTCACGATTGAA
CTTGAAAATTGGAAAGATCATTGATGTGAAACGACATCCTGATGCTGATG
GTCTGTTCATGGAAACAGTGGAATTTGGTGAAGAAAAGCCGAGGACAATT
TTGAGTGGTTTGGTAAAACATTATACTCTGGAACAAATGAAGgatcGAAC
AGCCATCTTTTTATGCAATCTCAAACCACAAAAGATGAGAGGCATTGCAT
CGGAAGGAATGATCATGTGTGCGTCCACACCAGAAAAAGTGGAAATCATC
ACGCCACCCGAAGGTGCTGCTATTGGCGATCGTGTTATCTGTCCGCAATT
TGCCGGTGAACCTGATGGACAACTTAATCCAAAGAAAAAGATTTGGGAGC
AAGTTGCACCAGACCTTGCCGTCGACGATGAAGGATTTGCTTCGTACAAA
GGGAACTCACTTGTCATCGAGGGTAAAGGAAAATGTAAAGCACCTACAAT
GACAAAATGTCCCATCAAATAACNGCAACCAGCACCTTCTTCAGGTGACA
AGAAGAATGAGAAAGCAAAAGCTTCCAACGAGAACAAGAAAGACAAGAAG
AAAGccaacaaagaaaataaagcaCCAAAAGCAGCGGCAGAGGGCGCAAA
ACCAATCGATGTTTCACGATTGAACTTGAAAATTGGAAAGATCATTGATG
TGAAACGACATCCTGATGCTGATGGTCTGTTCATGGAAACAGTGGAATTT
GGTGAAGAAAAGCCGAGGACAATTTTGAGTGGTTTGGTAAAACATTATAC
TCTGGAACAAATGAAGgatcGAACAGCCATCTTTTTATGCAATCTCAAAC
CACAAAAGATGAGAGGCATTGCATCGGAAGGAATGATCATGTGTGCGTCC
ACACCAGAAAAAGTGGAAATCATCACGCCACCCGAAGGTGCTGCTATTGG
CGATCGTGTTATCTGTCCGCAATTTGCCGGTGAACCTGATGGACAACTTA
ATCCAAAGAAAAAGATTTGGGAGCAAGTTGCACCAGACCTTGCCGTCGAC
GATGAAGGATTTGCTTCGTACAAAGGGAACTCACTTGTCATCGAGGGTAA
AGGAAAATGTAAAGCACCTACAATGACAAAATGTCCCATCAAATAACNGC
AACCAGCACCTTCTTCAGGTGACAAGAAGAATGAGAAAGCAAAAGCTTCC
AACGAGAACAAGAAAGACAAGAAGAAAGccaacaaagaaaataaagcaCC
AAAAGCAGCGGCAGAGGGCGCAAAACCAATCGATGTTTCACGATTGAACT
TGAAAATTGGAAAGATCATTGATGTGAAACGACATCCTGATGCTGATGGT
CTGTTCATGGAAACAGTGGAATTTGGTGAAGAAAAGCCGAGGACAATTTT
GAGTGGTTTGGTAAAACATTATACTCTGGAACAAATGAAGgatcGAACAG
CCATCTTTTTATGCAATCTCAAACCACAAAAGATGAGAGGCATTGCATCG
GAAGGAATGATCATGTGTGCGTCCACACCAGAAAAAGTGGAAATCATCAC
GCCACCCGAAGGTGCTGCTATTGGCGATCGTGTTATCTGTCCGCAATTTG
CCGGTGAACCTGATGGACAACTTAATCCAAAGAAAAAGATTTGGGAGCAA
GTTGCACCAGACCTTGCCGTCGACGATGAAGGATTTGCTTCGTACAAAGG
GAACTCACTTGTCATCGAGGGTAAAGGAAAATGTAAAGCACCTACAATGA
CAAAATGTCCCATCAAATAACNGCAACCAGCACCTTCTTCAGGTGACAAG
AAGAATGAGAAAGCAAAAGCTTCCAACGAGAACAAGAAAGACAAGAAGAA
AGccaacaaagaaaataaagcaCCAAAAGCAGCGGCAGAGGGCGCAAAAC
CAATCGATGTTTCACGATTGAACTTGAAAATTGGAAAGATCATTGATGTG
AAACGACATCCTGATGCTGATGGTCTGTTCATGGAAACAGTGGAATTTGG
TGAAGAAAAGCCGAGGACAATTTTGAGTGGTTTGGTAAAACATTATACTC
TGGAACAAATGAAGgatcGAACAGCCATCTTTTTATGCAATCTCAAACCA
CAAAAGATGAGAGGCATTGCATCGGAAGGAATGATCATGTGTGCGTCCAC
ACCAGAAAAAGTGGAAATCATCACGCCACCCGAAGGTGCTGCTATTGGCG
ATCGTGTTATCTGTCCGCAATTTGCCGGTGAACCTGATGGACAACTTAAT
CCAAAGAAAAAGATTTGGGAGCAAGTTGCACCAGACCTTGCCGTCGACGA
TGAAGGATTTGCTTCGTACAAAGGGAACTCACTTGTCATCGAGGGTAAAG
GAAAATGTAAAGCACCTACAATGACAAAATGTCCCATCAAATAACNGCAA
CCAGCACCTTCTTCAGGTGACAAGAAGAATGAGAAAGCAAAAGCTTCCAA
CGAGAACAAGAAAGACAAGAAGAAAGccaacaaagaaaataaagcaCCAA
AAGCAGCGGCAGAGGGCGCAAAACCAATCGATGTTTCACGATTGAACTTG
AAAATTGGAAAGATCATTGATGTGAAACGACATCCTGATGCTGATGGTCT
GTTCATGGAAACAGTGGAATTTGGTGAAGAAAAGCCGAGGACAATTTTGA
GTGGTTTGGTAAAACATTATACTCTGGAACAAATGAAGgatcGAACAGCC
ATCTTTTTATGCAATCTCAAACCACAAAAGATGAGAGGCATTGCATCGGA
AGGAATGATCATGTGTGCGTCCACACCAGAAAAAGTGGAAATCATCACGC
CACCCGAAGGTGCTGCTATTGGCGATCGTGTTATCTGTCCGCAATTTGCC
GGTGAACCTGATGGACAACTTAATCCAAAGAAAAAGATTTGGGAGCAAGT
TGCACCAGACCTTGCCGTCGACGATGAAGGATTTGCTTCGTACAAAGGGA
ACTCACTTGTCATCGAGGGTAAAGGAAAATGTAAAGCACCTACAATGACA
AAATGTCCCATCAAATAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_007126	XLOC_007126	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00012686-protein	TCONS_00012686-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000147	supercontig	sc0000147:305343..308313 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
428.19	427.769	219.829	191.216	59.7316	50.7427	90.4813	95.3177	150.395	117.581	169.836	220.64	285.304	312.461	241.54	243.094	213.661	241.345	271.907	258.007	212.797	201.082	278.119	269.421	132.659	141.312	168.432	227.866	189.991	198.473

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR002547	tRNA-bd_dom
IPR012340	NA-bd_OB-fold

Vocabulary: **Molecular Function**
Term	Definition
GO:0000049	tRNA binding

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0000049	tRNA binding

Blast

[Close]

BLAST of TCONS_00012686 vs. Swiss-Prot (Human)
Match: AIMP1 (Aminoacyl tRNA synthase complex-interacting multifunctional protein 1 OS=Homo sapiens GN=AIMP1 PE=1 SV=2)

HSP 1 Score: 211.46 bits (537), Expect = 1.385e-66
Identity = 96/164 (58.54%), Postives = 123/164 (75.00%), Query Frame = 1

Query:  130 PIDVSRLNLKIGKIIDVKRHPDADGLFMETVEFGEEKPRTILSGLVKHYTLEQMKDRTAIFLCNLKPQKMRGIASEGMIMCASTPEKVEIITPPEGAAIGDRVICPQFAGEPDGQLNPKKKIWEQVAPDLAVDDEGFASYKGNSLVIEGKGKCKAPTMTKCPIK 621
            PIDVSRL+L+IG II  ++HPDAD L++E V+ GE  PRT++SGLV H  LEQM++R  I LCNLKP KMRG+ S+ M+MCAS+PEK+EI+ PP G+  GDR+    F GEPD +LNPKKKIWEQ+ PDL  +DE  A+YKG    ++GKG C+A TM+   IK
Sbjct:  149 PIDVSRLDLRIGCIITARKHPDADSLYVEEVDVGEIAPRTVVSGLVNHVPLEQMQNRMVILLCNLKPAKMRGVLSQAMVMCASSPEKIEILAPPNGSVPGDRITFDAFPGEPDKELNPKKKIWEQIQPDLHTNDECVATYKGVPFEVKGKGVCRAQTMSNSGIK 312

The following BLAST results are available for this feature:

BLAST of TCONS_00012686 vs. Swiss-Prot (Human)

BLAST of TCONS_00012686 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
AIMP1	1.385e-66	58.54	Aminoacyl tRNA synthase complex-interacting multif...	[more]

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TCONS_00012686 (transcript) - C. hemisphaerica