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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012683 ID=TCONS_00012683|Name=TCONS_00012683|organism=Clytia hemisphaerica|type=transcript|length=515bp
CCagattctaaaaataaaaataaaaactgacaaaactaaaaaatatatGA
ATAAACTTTTCCCAGTTATTAGAAGAACTTTACATACTCGATCATTTTCA
TCCACCACTACAAGAATGAATGCCTTTGTAGAACGCCAACAACAAGCTGA
GAAAACTATCGATTTGTTAAAACAACAGATTGCTGTTTTGGTTTCAATTG
CAGaGCAAAAGCAGAAGATAGCAGAAAAGGAGGAGATTCAAAAGCTTCGC
AAAGAAAATAAGCAAGCAGAAAAACAAGTCCAGaaattgaaatatgattt
aCGCTTTTATGAATCACAAAATGGAGTCAAACAAATAGCTGTTCCTGAGA
AATCCACCCCAGTTGCATCAACCCCAACAACGGTGGAAGAGACACCAAAA
CCTTCGCAACCAGCACCTTCTTCAGGTGACAAGAAGAATGAGAAAGCAAA
AGCTTCCAACGAGAACAAGAAAGACAAGAAGAAAGccaacaaagaaaata
aagcaCCAAAAGCAN Run BLAST on NCBI protein sequence of TCONS_00012683-protein >TCONS_00012683-protein ID=TCONS_00012683-protein|Name=TCONS_00012683-protein|organism=Clytia hemisphaerica|type=polypeptide|length=171bp
QILKIKIKTDKTKKYMNKLFPVIRRTLHTRSFSSTTTRMNAFVERQQQAE
KTIDLLKQQIAVLVSIAEQKQKIAEKEEIQKLRKENKQAEKQVQKLKYDL
RFYESQNGVKQIAVPEKSTPVASTPTTVEETPKPSQPAPSSGDKKNEKAK
ASNENKKDKKKANKENKAPKA Run BLAST on NCBI transcript from alignment at sc0000147:302322..304198+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012683 ID=TCONS_00012683|Name=TCONS_00012683|organism=Clytia hemisphaerica|type=transcript|length=1877bp|location=Sequence derived from alignment at sc0000147:302322..304198+ (Clytia hemisphaerica)
CCagattctaaaaataaaaataaaaactgacaaaactaaaaaatatatGA
ATAAACTTTTCCCAGTTATTAGAAGAACTTTACATACTCGATCATTTTCA
TCCACCACTACAAGAATGAATGCCTTTGTAGAACGCCAACAACAAGCTGA
GAAAACTATCGATTTGTTAAAACAACAGATTGCTGTTTTGGTTTCAATTG
CAGGTTTGTAAATTATTTATTACCAGATTAGAACATGTTGCATGTAAAAA
AAACACTGctggaaaatttcaaagcaGAAACAAGATGTTTTTCGAGGTAA
AAAAGTGCAATTGTCATCTGACTGGAAAAAAGTGGGATGTTGGTTAACAA
TTGGGTTGGTTGATGCTTTTTTTTGAATAGTGGGTTTATAGATCATTGTT
TAATTCCTTACTTGAAAATTGATTCATTTTCTGCAGAACAAGCGAATTCA
GCCAATAAGCTATGCTAtctaattttactttcaataacaatttaaaataa
tgttCTCATAGAGTTATTTATTGATATATTCCTTCAAatacttgatttct
ttttttacagaGCAAAAGCAGAAGATAGCAGAAAAGGTATACCTATCATA
AATCTACAAGCATGATTTACTCAGACTCTGTTATATGGCACTTTTACATG
ATTGTTGGTCtaattttgcatcattgttGCTATACATTGGTGATAGCTAA
TATTCAgatgattttcaaatgatacACTAATAAAGTAAAGTGATTTACAT
TTAAATGTCCTAATTtacataattttcttttttgcgcAACCAGGATTGGA
CTTAGGCTTGAAGACAACAGATCTATTGttgtcaaaaaatgaaaaatggc
tgTCTATACTTTAAAGTACGGTTTGATTATAATGAAGAATACCTTTTCAA
AAGCATTTACACTTACAGATTAGCTTTGGTTTTTGTTTTAACTTCTTTTC
TTTGCTTTTCAACCTTACCAGGAGGAGATTCAAAAGCTTCGCAAAGAAAA
TAAGCAAGCAGAAAAACAAGTCCAGaaattgaaatatgatttaCGCTTTT
ATGAATCACAAAATGGAGGTAAATTCTAAAAGCtatctactttttaaaat
aCTATCAAAAGTTGTTTCTATCCGCTGttatttttatcattaaaatgatt
ttaaaaatcaaaactttcatATAATGAGAAGAAATTTAGTTTGTTGTCCA
GTTATCTTCTATTAGGTGAcccatagtttctagaggggtcaagacccccc
ttaggaaattcatttaaaatttcacaccccccttagaaaatcagtataaa
tgaaacgATTGTACAAAAGTCTTAATTTCgcataattcaaggaagatccc
cccttatctaagaagaacccccttaactggcaaccccccttaggaaagtc
atacttttaacaccccccttaagtttggttcatcaaaacctaagaccccc
ctaaatgtagggggTTTTGATAAGTTGTACAGTTTTCCTATGGAACGAGA
TATCCTTATGTAACTTGAAATAATTGTTTCCAAGAtcaattccatgttta
aaactACATTAAATTTAACCGCCTTTTCTTTACCTTACATTTTTACGAGG
AACGTAATCACATAAACAAAAATTATGGTACGAAAATTGAATCTCAAACT
TTGATCATACGATATTATGTTAAACTTTCATTTTGTAGTCAAACAAATAG
CTGTTCCTGAGAAATCCACCCCAGTTGCATCAACCCCAACAACGGTGGAA
GAGACACCAAAACCTTCGCAACCAGCACCTTCTTCAGGTGACAAGAAGAA
TGAGAAAGCAAAAGCTTCCAACGAGAACAAGAAAGACAAGAAGAAAGcca
acaaagaaaataaagcaCCAAAAGCAN Coding sequence (CDS) from alignment at sc0000147:302322..304198+ >TCONS_00012683 ID=TCONS_00012683|Name=TCONS_00012683|organism=Clytia hemisphaerica|type=CDS|length=2052bp|location=Sequence derived from alignment at sc0000147:302322..304198+ (Clytia hemisphaerica)
CagattctaaaaataaaaataaaaactgacaaaactaaaaaatatatGAA
TAAACTTTTCCCAGTTATTAGAAGAACTTTACATACTCGATCATTTTCAT
CCACCACTACAAGAATGAATGCCTTTGTAGAACGCCAACAACAAGCTGAG
AAAACTATCGATTTGTTAAAACAACAGATTGCTGTTTTGGTTTCAATTGC
AGaGCAAAAGCAGAAGATAGCAGAAAAGGAGGAGATTCAAAAGCTTCGCA
AAGAAAATAAGCAAGCAGAAAAACAAGTCCAGaaattgaaatatgattta
CGCTTTTATGAATCACAAAATGGAGTCAAACAAATAGCTGTTCCTGAGAA
ATCCACCCCAGTTGCATCAACCCCAACAACGGTGGAAGAGACACCAAAAC
CTTCGCAACCAGCACCTTCTTCAGGTGACAAGAAGAATGAGAAAGCAAAA
GCTTCCAACGAGAACAAGAAAGACAAGAAGAAAGccaacaaagaaaataa
agcaCCAAAAGCACagattctaaaaataaaaataaaaactgacaaaacta
aaaaatatatGAATAAACTTTTCCCAGTTATTAGAAGAACTTTACATACT
CGATCATTTTCATCCACCACTACAAGAATGAATGCCTTTGTAGAACGCCA
ACAACAAGCTGAGAAAACTATCGATTTGTTAAAACAACAGATTGCTGTTT
TGGTTTCAATTGCAGaGCAAAAGCAGAAGATAGCAGAAAAGGAGGAGATT
CAAAAGCTTCGCAAAGAAAATAAGCAAGCAGAAAAACAAGTCCAGaaatt
gaaatatgatttaCGCTTTTATGAATCACAAAATGGAGTCAAACAAATAG
CTGTTCCTGAGAAATCCACCCCAGTTGCATCAACCCCAACAACGGTGGAA
GAGACACCAAAACCTTCGCAACCAGCACCTTCTTCAGGTGACAAGAAGAA
TGAGAAAGCAAAAGCTTCCAACGAGAACAAGAAAGACAAGAAGAAAGcca
acaaagaaaataaagcaCCAAAAGCACagattctaaaaataaaaataaaa
actgacaaaactaaaaaatatatGAATAAACTTTTCCCAGTTATTAGAAG
AACTTTACATACTCGATCATTTTCATCCACCACTACAAGAATGAATGCCT
TTGTAGAACGCCAACAACAAGCTGAGAAAACTATCGATTTGTTAAAACAA
CAGATTGCTGTTTTGGTTTCAATTGCAGaGCAAAAGCAGAAGATAGCAGA
AAAGGAGGAGATTCAAAAGCTTCGCAAAGAAAATAAGCAAGCAGAAAAAC
AAGTCCAGaaattgaaatatgatttaCGCTTTTATGAATCACAAAATGGA
GTCAAACAAATAGCTGTTCCTGAGAAATCCACCCCAGTTGCATCAACCCC
AACAACGGTGGAAGAGACACCAAAACCTTCGCAACCAGCACCTTCTTCAG
GTGACAAGAAGAATGAGAAAGCAAAAGCTTCCAACGAGAACAAGAAAGAC
AAGAAGAAAGccaacaaagaaaataaagcaCCAAAAGCACagattctaaa
aataaaaataaaaactgacaaaactaaaaaatatatGAATAAACTTTTCC
CAGTTATTAGAAGAACTTTACATACTCGATCATTTTCATCCACCACTACA
AGAATGAATGCCTTTGTAGAACGCCAACAACAAGCTGAGAAAACTATCGA
TTTGTTAAAACAACAGATTGCTGTTTTGGTTTCAATTGCAGaGCAAAAGC
AGAAGATAGCAGAAAAGGAGGAGATTCAAAAGCTTCGCAAAGAAAATAAG
CAAGCAGAAAAACAAGTCCAGaaattgaaatatgatttaCGCTTTTATGA
ATCACAAAATGGAGTCAAACAAATAGCTGTTCCTGAGAAATCCACCCCAG
TTGCATCAACCCCAACAACGGTGGAAGAGACACCAAAACCTTCGCAACCA
GCACCTTCTTCAGGTGACAAGAAGAATGAGAAAGCAAAAGCTTCCAACGA
GAACAAGAAAGACAAGAAGAAAGccaacaaagaaaataaagcaCCAAAAG
CA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012683-exon-sc0000147-1491911889:302322..302524 | TCONS_00012683-exon-sc0000147-1491911889:302322..302524 | Clytia hemisphaerica | exon |
| TCONS_00012683-exon-sc0000147-1510915933:302322..302524 | TCONS_00012683-exon-sc0000147-1510915933:302322..302524 | Clytia hemisphaerica | exon |
| TCONS_00012683-exon-sc0000147-1575043694:302322..302524 | TCONS_00012683-exon-sc0000147-1575043694:302322..302524 | Clytia hemisphaerica | exon |
| TCONS_00012683-exon-sc0000147-1491911889:302882..302907 | TCONS_00012683-exon-sc0000147-1491911889:302882..302907 | Clytia hemisphaerica | exon |
| TCONS_00012683-exon-sc0000147-1510915933:302882..302907 | TCONS_00012683-exon-sc0000147-1510915933:302882..302907 | Clytia hemisphaerica | exon |
| TCONS_00012683-exon-sc0000147-1575043694:302882..302907 | TCONS_00012683-exon-sc0000147-1575043694:302882..302907 | Clytia hemisphaerica | exon |
| TCONS_00012683-exon-sc0000147-1491911889:303293..303389 | TCONS_00012683-exon-sc0000147-1491911889:303293..303389 | Clytia hemisphaerica | exon |
| TCONS_00012683-exon-sc0000147-1510915933:303293..303389 | TCONS_00012683-exon-sc0000147-1510915933:303293..303389 | Clytia hemisphaerica | exon |
| TCONS_00012683-exon-sc0000147-1575043694:303293..303389 | TCONS_00012683-exon-sc0000147-1575043694:303293..303389 | Clytia hemisphaerica | exon |
| TCONS_00012683-exon-sc0000147-1491911889:304010..304198 | TCONS_00012683-exon-sc0000147-1491911889:304010..304198 | Clytia hemisphaerica | exon |
| TCONS_00012683-exon-sc0000147-1510915933:304010..304198 | TCONS_00012683-exon-sc0000147-1510915933:304010..304198 | Clytia hemisphaerica | exon |
| TCONS_00012683-exon-sc0000147-1575043694:304010..304198 | TCONS_00012683-exon-sc0000147-1575043694:304010..304198 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000147 | supercontig | sc0000147:302322..304198 + |
Blast
The following BLAST results are available for this feature:
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