TCONS_00012612 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012612
Unique NameTCONS_00012612
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2253

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012612 ID=TCONS_00012612|Name=TCONS_00012612|organism=Clytia hemisphaerica|type=transcript|length=2253bp
CAAGATCTCAAAACCACTTGTTCTTGGCCTGTTGGCTTATTTCCTTGGCT
TGGTTTTGTTACTTGGGCCGAAAATCCATGTTCATATCTTCTACATGTAT
TGACAAGACATGGCTAAAAAATCAATTAACTTCAACACAATCACTCTACA
AGAGCTTGAAAAGATCCCTGGTATTGGAAAGTTTAAAGCCCAATCACTGG
TTGATGAACGAAACCATAGATTGTTTAAGAACATAAATGACTTGATCAAA
GTTGAAGGACtcactttgttatttttaaacagACTTCAGAACAAATTTGA
CTTTATTTTCGATACACAATCACCATGCAAAACAAATGCTCTAAAAAGGA
AAACCGAAAATGTAGATACTTCAATTGATGAAAAAGACAATGGGATCACA
ACACCAGAGAAGAAAGCCAGACCAAAATATAACAATAAATGTGCTTCAAC
TTCCAGCTCAAAGATTGTCCCAAATGTGGAGAATGCTCTTTGTAATAGAA
CTATACCTTCATGTGATAGTCCTGGAAAAGCAGTACGTAGTAGGCTTCAA
TCAGAAACAGCTAAGCCACCTGATGGACTTCCAGATTGGTTGAATAAATT
CCATGACTGGTCCAGAGATGAGAGATTGATTGCGTTAAATGACTTGATAG
GTTTATGTGATATGTCGGTCGTCAGACACATGATGGCCAAAATTGAGCCA
CATTTTCAAAGGGAttttatatctttattaccAAAAGAGTTGGCACTCTA
TGTTTTATCTTTCTTGGAACCAAAAGATTTATCAAATGCTGCAAGGACTT
GCAGATATTGGAGGATCCTTGGAGAAGACAATCTGTTATGGAAGGAGAAA
TGCCATGAATATCAGTTATTTTATCCTCTAAGTGATCTTTTAGAAGAAGG
AAAGGTTGATAAGAAGGCATCACAACCTAATGAGGCACCTTACAAAGAAC
TTTTTGCTTATTGTCACAAATTGGAGCGGAATTGGAGGTCAAACACTTTG
AGGCCTGTCATGTATTTAAGAGGTCATGATGATCATGTTGTAACTTGCTT
ACAGTTCGACGGTGTTCGTATAGTCAGTGCCTCAGATGATAATACGTTAA
AAGTGTGGTCTGCTGATACTGGAACTTTGATTCGCACCCTTGTGGGACAT
ACAGGTGGTGTGTGGTCATCACAATTAAGTGGAAATATAGTTGTGAGTGG
CTCAACAGACAGGACGCTGAGGGTCTGGAATGCTGATTCAGGAGAATGTA
TCCATGTTTTACAAGGTCACACATCAACTGTTCGTTGCCTGGCAATGCAT
GGAGATAACGTAGTAAGCGGATCCAGAGATGGAACTCTACGTGTCTGGGA
TGTCATGAAAGGAACACATCTTCATGTTTTGATTGGTCATGCAGCTGCTG
TCAGATGTGTACAATACAATGGTAAATACGTTGTCAGCGGTGCTTATGAT
TATTTGGTAAAAGTTTGGGATGTTGAAACAGAGACTTGTTTGCATACTCT
GACTGGTCATTCAAATCGTGTCTACTCATTACAGTTTGATGGTAAATACA
TCGTGTCTGGCTCTCTGGATACTTCGATACGTGTTTGGGATGCTCTTAGT
GGGCAGTTATTACACACACTCTTAGGTCATCAATCTTTGACTAGTGGAAT
GGTGTTGAAGAATAATTACTTAGTATCTGGGAATGCAGATTCTACTGTAA
AAATCTGGGATATTGTGTCTGGACAATGTTTACATACTTTAACTGGTCCC
AATAAACATCAAAGTGCTGTGACTTCTTTACAATTCAATACTAAGTTTGT
GGTTACTAGTTCTGACGATGGATCAGTGAAATTATGGGATCTAAAGACAG
GAGAATTCCTTAGAGACTTGGTTGAATTAGATTCTGGAGGATCTGGCGGT
GTGGTTTGGCGTgtcaaatgcaatgaaaagaaACTTGTATGTGCAGTTGG
TAGCAGGAATGGTACAGAGGAAACTAAACTGTTAGTGTTAGATTTTGATA
TTCCCTCTATACAATTTACGTGATTTCAAACTATGATTAATGGGTTGTCC
TTGGCATTATACTAAGAAATTTGTATCCACTCACATGTAGCTTAGATCAC
CAGTCTTCCTATGCGAATATAGGGAGATtgtttaaagtttctttttcatC
AGTTATTCAATAAATCCTTATTATATTCGTTTATTCagaatttatcaatt
ttttatatGTTAATTTTATATTAATGTTATAGTAGATGTGCATTTGCTCT
TCT
Run BLAST on NCBI

transcript from alignment at sc0000146:127972..139860+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012612 ID=TCONS_00012612|Name=TCONS_00012612|organism=Clytia hemisphaerica|type=transcript|length=11889bp|location=Sequence derived from alignment at sc0000146:127972..139860+ (Clytia hemisphaerica)
CAAGATCTCAAAACCACTTGTTCTTGGCCTGTTGGCTTATTTCCTTGGCT
TGGTTTTGTTACTTGGGCCGAAAATCCATGTTCATATCTTCTACATGTAT
TGACAAGGTAACCATTCACACAATTAGATCAGATTTTTCTGCATAGTAGG
TTTTGTTTTaatcatttttacatttttcttaaaatttccatCATGGCAGT
TTTTCATTGTGATTTCTGGCAGGCTTGCCTCTTGTGGACCCTCTTCATTT
CCATTTGGATTAGAACCTACATGACTATCAAGGATCAGCTAGTACGAAAC
GCAGGTTAAGGTTACAGGTTTCAGGGccagggttcaggtttcagggccag
ggtagggtgcgcactcgtcgggattttttgcgtggaaaaagtcgaaaatc
aaaattagaacattccatccatcataacttatccttaacaactccaaact
tgttcattcttttttttttaatactcagaatttatcagagaaaacaaaga
aaaaaaccccatcccattacctaccttcaataaaaagatatacaaTTTAT
TAGACATCAAGGTGGAAAAATGGCGACTCGGAATTTGTGGCACCACCGTC
GaccttgaccaccatttttcaaatggctatcgctaatgagctggatttGT
TATGGACtcacagttttttttataaaacgcgggaaagatcgtactttagt
ttgtcacgtggtagccttttcgataatctacgggccatctttaaatcgag
aaaaaagaagaaatttcgatttttcggcactttcctgaaatttttatcag
ggctaccatatatggttggaaagctaagggtttcAGCNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNCATTAGCGataggctaaagtttaacagtcatcgggccgattttc
agaccgcgccagcaaaactcctcacgccctgccacacggaagactacaTT
TCATCCGctatttttggcgcgattttggtgcttccgaaaattatttcttg
ctggcgtggtgtaaggaggcgattctttgaaaaggtgttttttttgtggt
ttgaaaatNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNtaataaatgacccctcatttttc
tcacaaaggtaaggactttcaaataaaattagtttggttttcaaaatttg
aggggaaaattttggcctgaccaccctagccagggttcaggtttcagggc
cGGGGCTCAGGTTTCAGGACCAGGGTTCAGGGTTCAGAGCTCAGGTTAAA
ATTATCTACAAAACAGACTTGCCTTTTTCAAATTACTGACCTCTTTActt
ctcttttctctttacaCTCTTTGTGTGGGGGGAGGGGGATCAAACAAAAA
AGCGAGGGTTGAATGGCATGGAATGCATTCACACCTGACCTTTCACAtct
ttatttgataaaaatttacaGTTGGTATTTCATTTGAGTAATAAAAGCTT
CGTTGTTAAAAAcgccgataaaatttttcttttaagaacacaaattcaac
aaaaaattaagttagTTTTAgcagattttacaaaaaagagaaaaaaaatt
tgtcgtCTTCTATTCCAGCCAATTTCATCTTACCAAATAAGTTttataaa
aaactatttctttttaaaaaatgggtGGGTGATACTTTcttgctttgaaa
gaaaaaataatttaatgttaCGGATGATTTCCACTGGTTCTGATCTTACT
CTTTCAAAAAACGATAAGCGTTTTGCCATATTTCTTTTTACAGGAGGAAT
AATAtaacttattattttttcgttattATTCTGTTCAATATAATAGTAAT
TGTTCTTGGTTAATGCTTTGATTTATAATTCTGCTTGTAATAGAATATTT
TAGTTAATTATTGTTTATTCAACGAGTTTTGTAACAAAAAGATAATTTGT
ACGTCAAAtgaattatgaaatattttcaaagcaaCGCTGAAAGTAGTAGT
GGTAGTACCTGCTGTCTcatattttaaaaagtattgcTCACCACCAAAct
attaaaagtttaaaaagaaaacacacaAGTATTATATAGAACATCAAGCA
AATGGTCTGCAGAATAAATAAATATGCCTTGGAACATTCTGGTCTGCAAT
GTACACAATTTTAACATGaaccctgaaacctgaaccctggCCCTGAACCC
TGAACCCTGGCCTTGAAACCTGAACCCTGGCCCTGAAACCTGTGACCTGG
GCCTGTGTTTCGTACTAGCCGATCAAGGATGTAGATCAGAACATTTTGCT
GAAAGGTTCAGAAAATGAGCTTTGAGCACATCTTGCAATAGACCTTTCCC
CTTTCCTCTCCATCATCCTGCCATAttcagtcaggacctctttggtcttt
tttaacattagttcggttagaataaaaacatacctgatcaacacaaccaa
accttctgtcttgcatttactctttccttcccaacaacttttgtttttgg
ttATGTGGGTTTTTAAAGTCCACTTAAGTatagtaatgaacctcttatac
gcttatctgaataaatctggttgaaaaccttctgtcaggtttcattccgt
acgtttattatccacgtggtgaaccggtctacgaattattttctttaacg
ggcgttgaatcgacaatgacatatttaatgatgtcataatcatcaatgcc
gtgcatattttgtcaatgccgtgcatattttgtcagcgccatgcatattt
tgtcaacatccttttcattggataaataccactaaaatatacaagataag
taaacataaatttattgcCCGCGAGCATTATCTcagaattgaagcgggca
aagattactgCGCAGATTGATAGCGGAcaaaggttttttgaagatatttt
cagttataatctaaggtagaacaaactaaacatagaaagggagtATTTTT
CAGTGCTCTATATGATGAtcagtattttttttgaattctatgtttagatt
tttctacccagccccgttgctatgtacgcacgccctgttgctaagacctt
tgcttgaaatcggaactgaaaccaaaataatttagcgcacactgccgttt
gcgtaatatcaataaagtgaaatgaggtcctgactggcCATATtgaatgg
gctattccaaaaaaatattgtataggggtattgacgaactatcccctgga
aattaggggtcgacacccctggaaagtgaaattttgtgaaaaagggcctg
GAAAATACCTATTGTTGATGTCAGTTTAGGAGgagagaaccccctggaaa
atatcccccttggaaaatctgaaaaatgaacaaaaacccttggaaaatca
aggctcagaccCTCTGGAagagttcgtcaatacccctgtatggtttaaaa
atggaatagcccaatttttGTATgcaaatcatcatcatcattccCCTTAG
AAAGTAtccaaaacatatgcaaaaagaaagtattaatttaaaacttacat
gcataattggcattatattaatgtgtaatcttgtagaagaaagattaaat
ttgcttctcttgaaaattaaaaataatcatattcgctcatctcttaccGT
CAATtgttctaacttgggacgattggttgaaacattgAGAATGTTGATAT
TCTGGCCTGTagtttcacttactgttaaatctctttgacaacaaatttgt
tttgataactccgccaagtttatcaatcaaactttctgtcataacatgtc
acgataactttcactgatagtgcaccctttttagtttttttgttttcatt
caaaatgaccggacaatgattggagaattagagaacgcctgtGGGATAAC
CGCCTATTGCCTGATGGGATTTACAAATAACGAGTAAAACAGgggttttg
atattttcttgcACAAGAAAGAgaatgtgtgtactccgtcttcgtggaat
tttttaatggcatgaaaacagaatatgctatgtctttaagaacagtttct
aaaaggcttttattGTTCTGTAagttattttctatttcttttatGCTTAT
TAGGGCTTCTAATTAAAATAAAAGGTGCTTAGCCAATCTAACGGTCATTT
CAGACAAAATGTTCAAAGGGGATGCATCCCTTTAGAACCACCCAATTTAC
CTCACATGGTCCAGGTTTGCTTGTCAGTAAATTATGCATGCAAACTTAGT
TCAAGTGATTTATTTTAGTAAGCTTTTTTGGGACTGgtcaaaattttaga
tgtttaGATGATAACTTTTTATTGACTAAACAGATAACAAAGCTTCTtat
aaatcaacaaaaattgttcttattgactcgctttcttcgtaactttcatg
agtgtttctaagatcacttttatcggcttgtttacttcataactttcaag
agtgtttcttaGTAAATATTTATCGATTCGCTTTCTTcttaactttcaag
agtgtttttaagaccacttttatcaacttgcttacttcataactttcaag
agtgtttctaagatcacttttatcggcctgcttacttcataactttcaag
agtgtttaaaagttaactttatcaacttgcttacttcgtaactttcaaga
gtgtttctgagatcacttttatcaatttacTTTCTTTGTTAccttcaagg
gtgtttcaaagttaacttttattgaCTCGCtgtcttcgtaactttcaaga
gtgtttttaagaccacttttatcaacttgcttaggcggtcatcgaaaaat
tgttgtATTCgggtcacccgcccgcatcaaattttccgctgattttccgg
tgcggagatgcggaaaaaaatctgggaaaagcaatttgttctttttaaag
catagcttttttctcaattgctctgacgaccatcgaaaaattgttttgct
cgcattaccacccgcccctgtgTTACTGgtgtgattaaaaaaaaaccggg
aatgtttttgaccgcccgtccgcccgcatgtattttaacacccgttgcga
cgcgaacagagcattttttcgatgaccgccttacttcataactttcaaga
gtgtttctaagatcacttttataggcttgcttacttcataacactttcaa
gagtgtttcaaagttaacttttattgactcgctttcttcgtaactttcaa
gagtgtttttaagaccacttttatcaacttgcttacttaataactttcaa
gagtgtttctaagatcacttttatcggcttgctttcttcgtaactttcag
gagtgtttctaagatcacttctATCAGcttgcttacttcataactttcaa
gagtgtttcaaagttaacttttattgactcgctttctttgtaactttcaa
gagtgtttctaagatcacttttatgaatttgctttctttgttactttcaa
gggtgttccaaagttaacttttattgaCTTGCTTTCTtagtaactttcaa
gagtgtttttaagaccacttttatcaacttgcttacttcctaactttcaa
gagtgtttctgagttaacttttatcaactcgctttcttcgtaacttttaa
gagtgtttctaagttaacttttatcaacttgctttctttgtaactttcaa
gggtgtttctaagatcactttaatcgaatcaatttctccgttacagtaac
aaactgttcCAAGGTAACTTTTAGTTTACCTACTCTCTTTCTCCGTAACT
TTCAAGActgcataattttagaaaaatatacactgaatgaccgacaggat
tttgagtttgaccaacaggatttcatttctgttGGACATGATGTCCGATA
GACTAATTATATTTATTTGTAGCCCTGTACTATTGTGTTTTGATTCAGCA
AATTATTGTAATTTTACAGCTAGCCAATAATAAGCAACCCTTAAAAGGCT
CACTTTTAAAATATAAGAATGTTTATATTGCCTgtggcaatttttttaaa
gataattttGTATGAATTCTTTATTCACCTTCATTATAAACATTTTAGAA
TGACATTGTTGACATGATTATAATTTGTTTTGAGGCAGCTCTTATACTTG
TTTTATTTATTACAACCTCGAACACTCAGAGACAAGTTTGTACAATGCTT
AATCTTGATATTTTACTTttaccatagtcattataaaagcACTGATCTGG
AAggcttttttctcttttaatattaaaagatggagcttacgtaccaaaat
caatttattttgcagactttttgatcatgtgattagaaaatagaccaatc
ccaagaggagatttttgtaacatgatcaaaaagtatgcgaattgcaactt
gtcttttgtttgtaagaaaagaaaattgaacaaaaagctaaaacaataca
ttgccagaccggggttttttataatgactatgcttTTACAATGGCTTGTA
CTGATCCTTCTTCTTTTAAACAGACATGGCTAAAAAATCAATTAACTTCA
ACACAATCACTCTACAAGAGCTTGAAAAGATCCCTGGTATTGGAAAGTTT
AAAGCCCAATCACTGGTTGATGAACGAAACCATAGATTGTTTAAGAACAT
AAATGACTTGATCAAAGTTGAAGGACtcactttgttatttttaaacagAC
TTCAGAACAAATTTGACTTTATTTTCGATACACAATCACCATGCAAAACA
AATGCTCTAAAAAGGAAAACCGAAAATGTAGATACTTCAATTGATGAAAA
AGACAATGGGATCACAACACCAGAGAAGAAAGCCAGACCAAAATATAACA
ATAAATGTGCTTCAACTTCCAGCTCAAAGATTGTCCCAAATGTGGAGAAT
GCTCTTTGTAATAGAACTATACCTTCATGTGATAGTCCTGGAAAAGCAGT
ACGTAGTAGGCTTCAATCAGAAACAGCTAAGCCACCTGATGGACTTCCAG
ATTGGTTGAATAAATTCCATGACTGGTCCAGAGATGAGAGATTGATTGCG
TTAAATGACTTGATAGGTTTATGTGATATGTCGGTCGTCAGACACATGAT
GGCCAAAATTGAGCCACATTTTCAAAGGGAttttatatctttattaccAA
AAGAGTTGGCACTCTATGTTTTATCTTTCTTGGAACCAAAAGATTTATCA
AATGCTGCAAGGACTTGCAGATATTGGAGGATCCTTGGAGAAGACAATCT
GTAAGCCATCATCTTTTCTCTTTGTTTGTTCTTTGATAGTGAAACTGAAT
TTTGTTTATGGCAGTGACAGTGTTAGAATATAAATTGTTTTTCTATACTC
TAAATTTAAACAAAATGTGTTATTTTTAGGTCAATTGATGCTATTataaa
aaagcctaaattttcaGAAGGTTGAAACCAATTATTATTCTTTCTTTAGG
TTATGGAAGGAGAAATGCCATGAATATCAGTTATTTTATCCTCTAAGTGA
TCTTTTAGAAGAAGGAAAGGTTGATAAGAAGGCATCACAACCTAATGAGG
CACCTTACAAAGAACTTTTTGCTTATTGTCACAAATTGGAGCGGAATTGG
AGGTCAAACACTTTGAGGCCTGTCATGTATTTAAGAGGTCATGATGATCA
TGTTGTAACTTGCTTACAGTTCGACGGTGTTCGTATAGTCAGTGCCTCAG
ATGATAATACGTTAAAAGTGTGGTCTGCTGATACTGGAACTTTGATTCGC
ACCCTTGTGGGACATACAGGTTTggattatttttatacaaaaaagcATGA
AATGGTCTTAATGTCTTATTGAAACTTCAACCAAGTGGGGCTGCCTATTT
GATATGCGTAATTCTGTCACTTTTATCATCCCACAATATATTTGACTGCT
TCATGATATGTTTAGGACATTTTTGAATAATGTTCTATAAATATTGAATT
ACTTCAAATAGGTGGTGTGTGGTCATCACAATTAAGTGGAAATATAGTTG
TGAGTGGCTCAACAGACAGGACGCTGAGGGTCTGGAATGCTGATTCAGGA
GAATGTATCCATGTTTTACAAGGTCACACATCAACTGTTCGTTGCCTGGC
AATGCATGGAGATAACGTAGTAAGCGGATCCAGAGATGGAACTCTACGTG
TCTGGGATGTCATGAAAGGAACACATCTTCATGTTTTGATTGGTCATGCA
GCTGCTGTCAGATGGTAAAACTGTTCTTAGACCCCACATCCAGGCTTTTG
TGGTTTTGGTTACTTTCTCTGATTTTTCATAATATTTATAGCTCAACAAC
AAACAATTATTTAAGCATAgaattgtaaaaatttaaattgtgcTACACCG
CAACTTTTTTCAACGTATTTCCACTCCAGTTGAAGCTCTCTCCTTAAAAT
CTTGCATCCATTTTTGCTAATGGTGTGTATATTGATTCCATTATACTAGT
TTTAgtaaagaaaacaagttttaaagtTTATTCCATTATATTGATTTCAT
ATATGATATTTATTTTCAACAGTGTACAATACAATGGTAAATACGTTGTC
AGCGGTGCTTATGATTATTTGGTAAAAGTTTGGGATGTTGAAACAGAGAC
TTGTTTGCATACTCTGACTGGTCATTCAAATCGTGTCTACTCATTACAGT
TTGATGGTAAATACATCGTGTCTGGCTCTCTGGATACTTCGATACGTGTT
TGGGATGCTCTTAGTGGGCAGTTATTACACACACTCTTAGGTCATCAATC
TTTGACTAGTGGAATGGTGTTGAAGAATAATTACTTAGTATCTGGGAATG
CAGATTCTACTGTAAAAATCTGGGATATTGTGTCTGGACAATGTTTACAT
ACTTTAACTGGTCCCAATAAACATCAAAGTGCTGTGACTTCTTTACAATT
CAATACTAAGTTTGTGGTTACTAGTTCTGACGATGGATCAGTGAAATTAT
GGGATCTAAAGACAGGAGAATTCCTTAGAGACTTGGTTGAATTAGATTCT
GGAGGATCTGGCGGTGTGGTTTGGCGTgtcaaatgcaatgaaaagaaACT
TGTATGTGCAGTTGGTAGCAGGAATGGTACAGAGGAAACTAAACTGTTAG
TGTTAGATTTTGATATTCCCTCTATACAATTTACGTGATTTCAAACTATG
ATTAATGGGTTGTCCTTGGCATTATACTAAGAAATTTGTATCCACTCACA
TGTAGCTTAGATCACCAGTCTTCCTATGCGAATATAGGGAGATtgtttaa
agtttctttttcatCAGTTATTCAATAAATCCTTATTATAATATTCGTTT
ATTCagaatttatcaattttttatatGTTAATTTTATATTAATGTTATAG
TAGATGTGCATTTGCTCTTCTTTCATACAACAAACAATAATGTGCAATAT
TTATAATGTCTTTTTAGGGATGTTGTCAATGTATGCTATGTATACATTAC
AACATCGTTGCTTTGTTCCTTTGANNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNTGGCACTCTATGTTTTATCTTTCTT
GGAACCAAAAGATTTATCAAATGCTGCAAGGACTTGCAGATATTGGAGGA
TCCTTGGAGAAGACAATCTGTAAGCTATCATCTTTTCTCTTTGTTTGTTC
TTTGATAGTGAAACTGAATTTTGTTTATGGCAGTGACAGTGTTGGAATAT
AAATTGTTTTTCTATACTCTAAATTTAAACAAAATGTGTTATTTTTAGGT
CAATTGATGCTATTataaaaaagcctaaatttcTAGAAGGTTGAAACCAA
TTATTATTCTTTCTTTAGGTTATGGAAGGAGAAATGCCATGAATATCAGT
TATTTTATCCTCTAAGTGATCTTTTAGAAGAAGGAAAGGTTGATAAGAAG
GCATCACAACCTAATGAGGCACCTTACAAAGAACTTTTTGCTTATTGTCA
CAAATTGGAGCGGAATTGGAGGTCAAACACTTTGAGGCCTGTCATGTATT
TAAGAGGTCATGATGATCATGTTGTAACTTGCTTACAGTTCGACGGTGTT
CGTATAGTCAGTGCCTCAGATGATAATACGTTAAAAGTGTGGTCTGCTGA
TACTGGAACTTTGATTCGCACCCTTGTGGGACATACAGGTTTggattatt
tttatacaaaaaagcATGAAATGGTCTTAAAATGTCTTATTGAAACTTCA
ACCAAGTGGGGTTGCCTATTTGATATGCGTAATTCTGTCACTTTTATTAT
CCCACAATATATTTGACTGCTTCATGATATGTTTAGGACATTTTTGAATA
ATGTTCTATAAATATTGAATTACTTCAAATAGGTGGTGTGTGGTCATCAC
AATTAAGTGGAAATATAGTTGTGAGTGGCTCAACAGACAGGACGCTGAGG
GTCTGGAATGCTGATTCAGGAGAATGTATCCATGTTTTACAAGGTCACAC
ATCAACTGTTCGTTGCCTGGCAATGCATGGAGATAACGTAGTAAGCGGAT
CCAGAGATGGAACTCTACGTGTCTGGGATGTCATGAAAGGAACACATCTT
CATGTTTTGATTGGTCATGCAGCTGCTGTCAGATGGTAAAACTGTTCTTA
GACCCCACATCCAGGCTTTTGTGGTTTTGGTTACTTTCTCTGATTTTTCA
TAATATTTATAGCTCAACAACAAACAATTATTTAAGCATAgaattgtaaa
aatttaaattgtgcTACACCGCAACTTTTTTCAACGTATTTCCACTCCAG
TTGAAGCTCTCTCCTTAAAATCTTGCATCCATTTTTGCTAATGGTGTGTA
TATTGATTCCATTATACTAGTTTTAgtaaagaaaacaagttttaaagtTT
ATTCCATTATATTGATTTCATATATGATATTTATTTTCAACAGTGTACAA
TACAATGGTAAATACGTTGTCAGCGGTGCTTATGATTATTTGGTAAAAGT
TTGGGATGTTGAAACAGAGACTTGTTTGCATACTCTGACTGGTCATTCAA
ATCGTGTCTACTCATTACAGTTTGATGGTAAATACATCGTGTCTGGCTCT
CTGGATACTTCGATACGTGTTTGGGATGCTCTTAGTGGGCAGTTATTACA
CACACTCTTAGGTCATCAATCTTTGACTAGTGGAATGGTGTTGAAGAATA
ATTACTTAGTATCTGGGAATGCAGATTCTACTGTAAAAATCTGGGATATT
GTGTCTGGACAATGTTTACATACTTTAACTGGTCCCAATAAACATCAAAG
TGCTGTGACTTCTTTACAATTCAATACTAAGTTTGTGGTTACTAGTTCTG
ACGATGGATCAGTGAAATTATGGGATCTAAAGACAGGAGAATTCCTTAGA
GACTTGGTTGAATTAGATTCTGGAGGATCTGGCGGTGTGGTTTGGCGTgt
caaatgcaatgaaaagaaACTTGTATGTGCAGTTGGTAGCAGGAATGGTA
CAGAGGAAACTAAACTGTTAGTGTTAGATTTTGATATTCCCTCTATACAA
TTTACGTGATTTCAAACTATGATTAATGGGTTGTCCTTGGCATTATACTA
AGAAATTTGTATCCACTCACATGTAGCTTAGATCACCAGTCTTCCTATGC
GAATATAGGGAGATtgtttaaagtttctttttcatCAGTTATTCAATAAA
TCCTTATTATATTCGTTTATTCagaatttatcaattttttatatGTTAAT
TTTATATTAATGTTATAGTAGATGTGCATTTGCTCTTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007079XLOC_007079Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012612-exon-sc0000146-1491911889:127972..128078TCONS_00012612-exon-sc0000146-1491911889:127972..128078Clytia hemisphaericaexon
TCONS_00012612-exon-sc0000146-1510915933:127972..128078TCONS_00012612-exon-sc0000146-1510915933:127972..128078Clytia hemisphaericaexon
TCONS_00012612-exon-sc0000146-1575043694:127972..128078TCONS_00012612-exon-sc0000146-1575043694:127972..128078Clytia hemisphaericaexon
TCONS_00012612-exon-sc0000146-1491911889:134645..135371TCONS_00012612-exon-sc0000146-1491911889:134645..135371Clytia hemisphaericaexon
TCONS_00012612-exon-sc0000146-1510915933:134645..135371TCONS_00012612-exon-sc0000146-1510915933:134645..135371Clytia hemisphaericaexon
TCONS_00012612-exon-sc0000146-1575043694:134645..135371TCONS_00012612-exon-sc0000146-1575043694:134645..135371Clytia hemisphaericaexon
TCONS_00012612-exon-sc0000146-1491911889:137940..138259TCONS_00012612-exon-sc0000146-1491911889:137940..138259Clytia hemisphaericaexon
TCONS_00012612-exon-sc0000146-1510915933:137940..138259TCONS_00012612-exon-sc0000146-1510915933:137940..138259Clytia hemisphaericaexon
TCONS_00012612-exon-sc0000146-1575043694:137940..138259TCONS_00012612-exon-sc0000146-1575043694:137940..138259Clytia hemisphaericaexon
TCONS_00012612-exon-sc0000146-1491911889:138454..138706TCONS_00012612-exon-sc0000146-1491911889:138454..138706Clytia hemisphaericaexon
TCONS_00012612-exon-sc0000146-1510915933:138454..138706TCONS_00012612-exon-sc0000146-1510915933:138454..138706Clytia hemisphaericaexon
TCONS_00012612-exon-sc0000146-1575043694:138454..138706TCONS_00012612-exon-sc0000146-1575043694:138454..138706Clytia hemisphaericaexon
TCONS_00012612-exon-sc0000146-1491911889:139015..139860TCONS_00012612-exon-sc0000146-1491911889:139015..139860Clytia hemisphaericaexon
TCONS_00012612-exon-sc0000146-1510915933:139015..139860TCONS_00012612-exon-sc0000146-1510915933:139015..139860Clytia hemisphaericaexon
TCONS_00012612-exon-sc0000146-1575043694:139015..139860TCONS_00012612-exon-sc0000146-1575043694:139015..139860Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000146supercontigsc0000146:127972..139860 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.29001	8.21268	69.9354	76.6401	16.6333	10.9317	3.39349	9.61444	5.29834	6.4523	9.18935	4.1338	7.45351	1.98591	3.78464	3.87452	6.62896	7.72398	2.61709	6.67044	4.77474	1.86705	10.4547	10.2034	4.75971	9.85748	9.05704	6.24241	11.1024	7.42757
Blast
[Close]
BLAST of TCONS_00012612 vs. Swiss-Prot (Human)
Match: FBXW7 (F-box/WD repeat-containing protein 7 OS=Homo sapiens GN=FBXW7 PE=1 SV=1)

HSP 1 Score: 699.893 bits (1805), Expect = 0.000e+0
Identity = 344/518 (66.41%), Postives = 406/518 (78.38%), Query Frame = 2 
Query:  449 TSSSKIVPNVENALCNRTIPSCDSPGKAVRSRLQSETAKPPDGLPDWLNKFHDWSRDERLIALNDLIGLCDMSVVRHMMAKIEPHFQRDFISLLPKELALYVLSFLEPKDLSNAARTCRYWRILGEDNLLWKEKCHEYQLFYPLSDLLEEGKVDKKASQPNEAPYKELFAYCHKLERNWRSNTLRPVMYLRGHDDHVVTCLQFDGVRIVSASDDNTLKVWSADTGTLIRTLVGHTGGVWSSQLSGNIVVSGSTDRTLRVWNADSGECIHVLQGHTSTVRCLAMHGDNVVSGSRDGTLRVWDVMKGTHLHVLIGHAAAVRCVQYNGKYVVSGAYDYLVKVWDVETETCLHTLTGHSNRVYSLQFDGKYIVSGSLDTSIRVWDALSGQLLHTLLGHQSLTSGMVLKNNYLVSGNADSTVKIWDIVSGQCLHTLTGPNKHQSAVTSLQFNTKFVVTSSDDGSVKLWDLKTGEFLRDLVELDSGGSGGVVWRVKCNEKKLVCAVGSRNGTEETKLLVLDFDI 2002
            TS++ +VP          + + +  G+  R R+ S   +PP GL +WL  F  WS  E+L+AL++LI  C+ + V+HMM  IEP FQRDFISLLPKELALYVLSFLEPKDL  AA+TCRYWRIL EDNLLW+EKC E  +  PL   ++  KV K       +P+K  +   H+++ NWR   L+    L+GHDDHV+TCLQF G RIVS SDDNTLKVWSA TG  +RTLVGHTGGVWSSQ+  NI++SGSTDRTL+VWNA++GECIH L GHTSTVRC+ +H   VVSGSRD TLRVWD+  G  LHVL+GH AAVRCVQY+G+ VVSGAYD++VKVWD ETETCLHTL GH+NRVYSLQFDG ++VSGSLDTSIRVWD  +G  +HTL GHQSLTSGM LK+N LVSGNADSTVKIWDI +GQCL TL GPNKHQSAVT LQFN  FV+TSSDDG+VKLWDLKTGEF+R+LV L+SGGSGGVVWR++ +  KLVCAVGSRNGTEETKLLVLDFD+
Sbjct:  194 TSTTGLVPCSATPTTFGDLRAANGQGQQ-RRRITS--VQPPTGLQEWLKMFQSWSGPEKLLALDELIDSCEPTQVKHMMQVIEPQFQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLH--IKRRKVIKPGFI--HSPWKSAYIRQHRIDTNWRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 704
The following BLAST results are available for this feature:
BLAST of TCONS_00012612 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FBXW70.000e+066.41F-box/WD repeat-containing protein 7 OS=Homo sapie... [more]
back to top