|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012606 ID=TCONS_00012606|Name=TCONS_00012606|organism=Clytia hemisphaerica|type=transcript|length=1387bpRun BLAST on NCBI protein sequence of TCONS_00012606-protein >TCONS_00012606-protein ID=TCONS_00012606-protein|Name=TCONS_00012606-protein|organism=Clytia hemisphaerica|type=polypeptide|length=413bp SSVSLRRCFRLRILQMAASLSAQDVKSCMDLALKGEQLCKNGDCRSGVQYRun BLAST on NCBI transcript from alignment at sc0000146:50148..77400+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00012606 ID=TCONS_00012606|Name=TCONS_00012606|organism=Clytia hemisphaerica|type=transcript|length=27253bp|location=Sequence derived from alignment at sc0000146:50148..77400+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000146:50148..77400+ >TCONS_00012606 ID=TCONS_00012606|Name=TCONS_00012606|organism=Clytia hemisphaerica|type=CDS|length=12420bp|location=Sequence derived from alignment at sc0000146:50148..77400+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00012606 vs. Swiss-Prot (Human)
Match: GPSM2 (G-protein-signaling modulator 2 OS=Homo sapiens GN=GPSM2 PE=1 SV=3) HSP 1 Score: 545.428 bits (1404), Expect = 0.000e+0 Identity = 260/370 (70.27%), Postives = 310/370 (83.78%), Query Frame = 1
Query: 79 SCMDLALKGEQLCKNGDCRSGVQYFEAAIQVGTEDLKTLSAVYSQLGNAYFYLQEYEKALEFHKHDLTLARTLGDKLGEAKASGNLGNTLKVLGKFDEAIFCCTRHLDTSRDLKDKIGEARALYNLGNVYHAKGKHLGRSRHRDPGDFPFEVQQALSRAVEFYEANLILVHELNDRAAEGRAYGNLGNTHYLLGNFEKAVQYHEERLLIAREFNDKAAERRAFSNLGNAHVFLGEFEIAVEYYKKTRDLAKELNDKAIEAQACYSLGNTYTLLKKYSSAVEYHKEHLSFAQELEDRVGEGRAYWSLGNALTAIGQHKEALSFAMQHLLISKEVGDRTGELTAEMNISDLRAVLGVDRSAEASNAMSSGEV 1188
SC++LAL+GE+LCK+GDCR+GV +FEAA+QVGTEDLKTLSA+YSQLGNAYFYL +Y KALE+H HDLTLART+GD+LGEAKASGNLGNTLKVLG FDEAI CC RHLD SR+L DK+GEARALYNLGNVYHAKGK G +D G+FP EV+ AL AV+FYE NL LV L DRAA+GRA+GNLGNTHYLLGNF AV HE+RLLIA+EF DKAAERRA+SNLGNA++FLGEFE A EYYKKT LA++L D+A+EAQ+CYSLGNTYTLL+ Y A++YH +HL+ AQEL DR+GEGRA WSLGNA TA+G H +A+ FA +HL IS+EVGD++GELTA +N+SDL+ VLG+ S S + E+
Sbjct: 23 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNSIMSENTEI 392 The following BLAST results are available for this feature:
BLAST of TCONS_00012606 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.