TCONS_00012563 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012563
Unique NameTCONS_00012563
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length601

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012563 ID=TCONS_00012563|Name=TCONS_00012563|organism=Clytia hemisphaerica|type=transcript|length=601bp
TTCAGACAAAATCAACAGagccaaattttaagtgaaTGATATTAAACAAA
TGGTGTTGTTATACCCATGACTGTCTGTCTAAAAGTTCATTAGATCATTG
ATGGGAATTTCAACTAATGAACTTCTTTCGCCGGAAGAAAAAGCCAGAGG
ATGTCCAGAAGTCACAAAATGAACACTTACTTAATGAATTATGCACCGTG
CTGAAAACTCATGGAGAAGCAATACTAcgtggaaaaactaaacttacTTT
GACTACTCCAATTTTGGCAACATTAAACttttactttcaaaaaataacag
AAGGTGTCAACGAGGCATGTTTTCAAGTGGCAAATAATGAACAAGAAAAA
GATGCAAATGTCTTACAAAcagttttattcatttttgatttcattcaaaa
agtactGAGTTTGaagTTAACTTCTGGTAAAGTTGCAACACAATGCCCTC
TACTGACCCTAGAATATTTCAAAGCTCTGCAGATCCTAGAGATCAGCAGA
GTAAACATCTTTACTATCAAAGGTTTGCACCTTATTAGAAGACAAATCAA
gtctttgaaatgttttcatgCAACCTACGCAATTAATGACATTGTCTTAG
C
Run BLAST on NCBI

transcript from alignment at sc0000145:239688..242720-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012563 ID=TCONS_00012563|Name=TCONS_00012563|organism=Clytia hemisphaerica|type=transcript|length=3033bp|location=Sequence derived from alignment at sc0000145:239688..242720- (Clytia hemisphaerica)
TTCAGACAAAATCAACAGAGCCAAATTTTAAGTGAATGATATTAAACAAA
TGGTGTTGTTATACCCATGACTGTCTGTCTAAAAGTTCATTAGATCATTG
ATGGGAATTTCAACTAATGAACTTCTTTCGCCGGAAGAAAAAGCCAGAGG
ATGTCCAGAAGTCACAAAATGAACACTTACTTAATGAATTATGCACCGTG
CTGAAAACTCATGGTAAGTGCTCTGTTATTTCATGACATACTGATACAAG
GGCTACAACTGACACATCTTGAAAGGTCTACTAGCTGCCACTGATGAAAT
CATTGCCTCGCTCACGGTCAAATATATAGATAATATAATAGATATAAAAA
TACAATAAATCTTGTGCTTTGTTTTCAACACTAAAATTAGGTTTTAGGTT
ACTGATTAACCAGTCATTAGACCAACCAGTCCTTGTAATACTGATAATAC
TAGTTCCTTAATCTTCTGCTGTCGTATCTATTAAAACTCTTCTCATTTTT
CGATTCTACTTTCCAGGAGAAGCAATACTACGTGGAAAAACTAAACTTAC
TTTGACTACTCCAATTTTGGCAACATTAAACTTTTACTTTCAAAAAATAA
CAGAAGGTAAGTCCCAATCACCCTCACGATAATTCTGATATTTATAATAT
ATTATAATTACATCTATCCACACGCACAGACACATGTTTCGTCCTTCCCA
GGACTCATCAGTGCGGCTCAGGTGAGCGAGCATAGACTGCTGTTGTCACC
AGAGTGCTCAAAACACTAAATACTGAGCTTTGCATAATATATTATAATTA
GGTAGTTCTTAACTTTTTGTCATATAAGGATCTTTAACTTGAGTTTTCTA
CTGAAAAGCAGAATTAGCGTATCAAAGATTCATCAGTAAAAAGTAAATGT
ATTTTGTAAATACATAGGTTTTTAAATCCCTAGCAACGTGTCTGGATTAA
TTTGATATTTTTGATGTGGACAGGTATTTGCAATGAACACCTATTAGCCG
CTGTAGCTTGAGTGGTTTTAAGTTAACTTTACCAGCGTTTTCTTGATTGA
AGGTGTCAACGAGGCATGTTTTCAAGTGGCAAATAATGAACAAGAAAAAG
ATGCAAATGTCTTACAAACAGTTTTATTCATTTTTGATTTCATTCAAAAA
GTACTGAGTTTGAAGGTATATATTTTTTTCTTTTTGTTATCCTTCAAATC
ATCATCAATATTCTACTTGATCTTTACTTTGCTTTGTGAAATAAAATTCA
TCTCTAAGAAACTGACTAGTTTTCTTTATTAACAAATACATAATTTTGTC
TCATTCAGTTAACTTCTGGTAAAGTTGCAACACAATGCCCTCTACTGACC
CTAGAATATTTCAAAGCTCTGCAGATCCTAGAGGTAATTTACAATAACTA
AATAGTTATTTTATTTAATTTCCATTTCTATTTGTCAATTTTTAGATCCT
ACCATTACACATNTCTACTTTCCAGGAGAAGCAATACTACGTGGAAAAAC
TAAACTTACTTTGACTACTCCAATTTTGGCAACATTAAACTTTTACTTTC
AAAAAATAACAGAAGGTAAGTCCCAATCACCCTCACGATAATTCTGATAT
TTATAATATATTATAATTACATCTATCCACAGACGCATGTTTCGTCCTTC
CCAGGACTCATCAGTGCGGCTCAGGTGAGCGAGCATAGACTGCTGTTGTC
ACCAGAGTGCTCAAAACACTAAATACTGAGCTTTGCATAATATATTATAA
TTAGGTAGTTCTTAACTTTTTGTCATATAAGGATCTTTAACTTGAGTTTT
CTACTGAAAAGCAGAATTAGCGTATCAAAGATTCATCAGTAAAAAGTAAA
TGTATTTTGTAAATACATAGGTTTTTAAATCCCTAGCAACGTGTCTGGAT
TAATTTGATATTTTTGATGTGGACAGGTATTTGCAATGAACACCTATTAG
CCACTGTAGCTTGAGTGGTTTTAAGTTAACTTTACCAGCGTTTTCTTGAT
TGAAGGTGTCAACGAGGCATGTTTTCAAGTGGCAAATAATGAACAAGAAA
AAGATGCAAATGTCTTACAAACAGTTTTATTCATTTTTGATTTCATTCAA
AAAGTACTGAGTTTGAAGGTATATATTTTTTTCTTTTTGTTATCCTTCAA
ATCATCATCAATATTCTACTTGATCTTTACTTTGCTTTGTGAAATAAAAT
TCATCTCTAAGAAACTGACTAGTTTTCTTTATTAACAAATACATAATTTT
GTCTCATTCAGTTAACTTCTGGTAAAGTTGCAACACAATGCCCTCTACTG
ACCCTAGAATATTTCAAAGCTCTGCAGATCCTAGAGGTAATTTACAATAA
CTAAATAGTTATTTAATTTAATTTCCATTTCTATTTGTCAATTTTTAGAT
CCTACCATTACACATTTTTACATACGATTTTACTTTTTAACATTGACATT
AAATACTATGCAACTTGAATAGCTTTTGGTGATTTTTTTTACTATCCTAT
TCGAGAGATGTCTTGTAAATTGGTACATTCCCATTTATGTTTTTTAAATA
TGTAGAATATTTTTGGGTTATTTTTTTTAGATCAGCAGAGTAAACATCTT
TACTATCAAAGGTTTGCACCTTATTAGAAGACAAATCAAGTCTTTGAAAT
GTTTTCATGCAACCTACGCAATTAATGTAAGTCTGTTTGAGTTGTGTAAT
AATTGGCAACTATTTAGCCTACTAAAGGAAATAACACTACCAGACATCAA
AACAAAATTGACTTGTTTTTTTGCTTTATAAGACCATGGTTGAAATTGCG
GGGACTTTTCTTTGAACAGAGAATTTTCCAATTTTGTGTAAATTTTATAA
AATGTCTCATTCTATTGAAGAGGTAAGGCAGCTAATGTAGCATTTACCCA
CAAATTTTACCATGGTGATGGAAGGATCCATAAAAGAAAGTTAATGCAAT
TCCCAAATCTGGCAAGAAAAAGTCAAAATGTTTTCTTGGTCACAAATATT
ATTGATTTTGTTTATTCAGGACATTGTCTTAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007045XLOC_007045Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012563-exon-sc0000145-1575043694:242508..242720TCONS_00012563-exon-sc0000145-1575043694:242508..242720Clytia hemisphaericaexon
TCONS_00012563-exon-sc0000145-1575043694:242115..242204TCONS_00012563-exon-sc0000145-1575043694:242115..242204Clytia hemisphaericaexon
TCONS_00012563-exon-sc0000145-1575043694:240603..240715TCONS_00012563-exon-sc0000145-1575043694:240603..240715Clytia hemisphaericaexon
TCONS_00012563-exon-sc0000145-1575043694:240385..240459TCONS_00012563-exon-sc0000145-1575043694:240385..240459Clytia hemisphaericaexon
TCONS_00012563-exon-sc0000145-1575043694:240045..240140TCONS_00012563-exon-sc0000145-1575043694:240045..240140Clytia hemisphaericaexon
TCONS_00012563-exon-sc0000145-1575043694:239688..239701TCONS_00012563-exon-sc0000145-1575043694:239688..239701Clytia hemisphaericaexon
TCONS_00012563-exon-sc0000145-1510915933:242508..242720TCONS_00012563-exon-sc0000145-1510915933:242508..242720Clytia hemisphaericaexon
TCONS_00012563-exon-sc0000145-1510915933:242115..242204TCONS_00012563-exon-sc0000145-1510915933:242115..242204Clytia hemisphaericaexon
TCONS_00012563-exon-sc0000145-1510915933:240603..240715TCONS_00012563-exon-sc0000145-1510915933:240603..240715Clytia hemisphaericaexon
TCONS_00012563-exon-sc0000145-1510915933:240385..240459TCONS_00012563-exon-sc0000145-1510915933:240385..240459Clytia hemisphaericaexon
TCONS_00012563-exon-sc0000145-1510915933:240045..240140TCONS_00012563-exon-sc0000145-1510915933:240045..240140Clytia hemisphaericaexon
TCONS_00012563-exon-sc0000145-1510915933:239688..239701TCONS_00012563-exon-sc0000145-1510915933:239688..239701Clytia hemisphaericaexon
TCONS_00012563-exon-sc0000145-1491911889:242508..242720TCONS_00012563-exon-sc0000145-1491911889:242508..242720Clytia hemisphaericaexon
TCONS_00012563-exon-sc0000145-1491911889:242115..242204TCONS_00012563-exon-sc0000145-1491911889:242115..242204Clytia hemisphaericaexon
TCONS_00012563-exon-sc0000145-1491911889:240603..240715TCONS_00012563-exon-sc0000145-1491911889:240603..240715Clytia hemisphaericaexon
TCONS_00012563-exon-sc0000145-1491911889:240385..240459TCONS_00012563-exon-sc0000145-1491911889:240385..240459Clytia hemisphaericaexon
TCONS_00012563-exon-sc0000145-1491911889:240045..240140TCONS_00012563-exon-sc0000145-1491911889:240045..240140Clytia hemisphaericaexon
TCONS_00012563-exon-sc0000145-1491911889:239688..239701TCONS_00012563-exon-sc0000145-1491911889:239688..239701Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000145supercontigsc0000145:239688..242720 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.23124	0.701877	2.21431	1.62349	2.77684	2.26226	1.52667	2.37182	0.806303	1.83482	0	0	0.1124	0	1.82435	0.752426	0.888018	0.765539	0.516609	0	1.47589	0.245382	0.537113	2.04729	0	0	1.10203	0.338783	2.05819	1.44435
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00012563 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top