TCONS_00012541 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012541
Unique NameTCONS_00012541
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length387

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012541 ID=TCONS_00012541|Name=TCONS_00012541|organism=Clytia hemisphaerica|type=transcript|length=387bp
CGTTTTACTGAAGGAGGAGGTGGTGGGCCATCGCGCATTACTGGAGGAGG
AAGTGGTGGTTCACTCTGCATCGCTGAAGGAGGAGGAGGAGGTGGTGGTC
GACTGCGTATTACTGAAGGAGGAGGAGGTGTTCGACTTCTGCTTATTTCA
GTTGATGGGCATTGAGGTGAATGAGGtcataatgattttaatgaatATGT
ATCCTTGTAGAGGGTTGTGGTAGTTGGAATTTGCAAACTTCCACTGGGTG
GTGTTTTGGTTGAAGGAATGAAATTGTCTGTCGGTGGTGATTGAGGTTAT
GATGTAtgtgaattttctttgaatgccATGTGATCATAAGTAAGAAACTA
CACATAGAGCGTATGTTTGTATATGTCAACTTAAAAC
Run BLAST on NCBI

transcript from alignment at sc0000145:483500..484057+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012541 ID=TCONS_00012541|Name=TCONS_00012541|organism=Clytia hemisphaerica|type=transcript|length=558bp|location=Sequence derived from alignment at sc0000145:483500..484057+ (Clytia hemisphaerica)
CGTTTTACTGAAGGAGGAGGTGGTGGGCCATCGCGCATTACTGGAGGAGG
AAGTGGTGGTTCACTCTGCATCGCTGAAGGAGGAGGAGGTGGTGGTCGAC
TGCGTATTACTGAAGGAGGAGGAGGTGGTAGTCCACAGTGTATTACTGAA
GGCAGAAGTTGAGGTGGTTCACTACGTTTTACTGAAGGAGGAGGTGGTGG
GCCATCGCGCATTACTGGAGGAGGAAGTGGTGGTTCACTCTGCATCGCTG
AAGGAGGAGGAGGTGGTGGTCGACTGCGTATTACTGAAGGAGGAGGAGGT
GTTCGACTTCTGCTTATTTCAGTTGATGGGCATTGAGGTGAATGAGGtca
taatgattttaatgaatATGTATCCTTGTAGAGGGTTGTGGTAGTTGGAA
TTTGCAAACTTCCACTGGGTGGTGTTTTGGTTGAAGGAATGAAATTGTCT
GTCGGTGGTGATTGAGGTTATGATGTAtgtgaattttctttgaatgccAT
GTGATCATAAGTAAGAAACTACACATAGAGCGTATGTTTGTATATGTCAA
CTTAAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007036XLOC_007036Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012541-exon-sc0000145-1491911889:483500..483587TCONS_00012541-exon-sc0000145-1491911889:483500..483587Clytia hemisphaericaexon
TCONS_00012541-exon-sc0000145-1510915933:483500..483587TCONS_00012541-exon-sc0000145-1510915933:483500..483587Clytia hemisphaericaexon
TCONS_00012541-exon-sc0000145-1575043694:483500..483587TCONS_00012541-exon-sc0000145-1575043694:483500..483587Clytia hemisphaericaexon
TCONS_00012541-exon-sc0000145-1491911889:483759..484057TCONS_00012541-exon-sc0000145-1491911889:483759..484057Clytia hemisphaericaexon
TCONS_00012541-exon-sc0000145-1510915933:483759..484057TCONS_00012541-exon-sc0000145-1510915933:483759..484057Clytia hemisphaericaexon
TCONS_00012541-exon-sc0000145-1575043694:483759..484057TCONS_00012541-exon-sc0000145-1575043694:483759..484057Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000145supercontigsc0000145:483500..484057 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	1.16003	0.328905	0.768477	0.850105	0.523214	0.339721	0.703573	1.20061	0.767376	0.348019	0.630913	0.643815	1.52238	0.334021	1.79183	0.763897	0	0	2.92007	1.8774	0	1.66051	0	0.255586
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00012541 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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