|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012538 ID=TCONS_00012538|Name=TCONS_00012538|organism=Clytia hemisphaerica|type=transcript|length=1489bp
AACACAATACAGCACATTCTCAACAAACAGTCCGACCTCAATATAAAGTA
GCTGATCAAGTTGCAAGTAGTTCTCAACCAAATACCAATGCAAACGTAGA
AGTAGTTCAAACTCCACAAGTCTCTGCTACCAACTATGCTTCAAATACCA
ATTACTATGACCCTCAGAAAGATTACGAACCGGCGGCGCTAGATGCTTAT
CTACAACCAAGTACCGCTAACTATTTCGATAAATATTTCTCACATAACGG
TATCCCTGATCAGCGTCATCATGCCAAAGCGTACAGTTTCTTGCATTCTT
TCTTACGCCACGTCAAAAGTATTACGCACGATCCAGAGTTCTGGAAAACC
CAGCAACCCATCCAAGCTGTTACCCAAACAGCGTTTAAGAGGAACGAAAT
CACAGAACCTATCCTTGAAGGTCACAGCAACATTCGTGATCATGTTGCAG
GACGTATTTTGAGTGAACCTAACTATGTCCTTGGAGATGCAGGTGATGTA
AAGAAGCTTCTTCATGGATCTGGATTCAATACATTCAATGATGAAGATAT
GAAACTTCTCTTTGGCTCGCCAGCTGCCAAGAAATCAGAAACCAATGGAG
atgaaatttcaaagaaaactaTAACTAAAGCGTCGAGAAATGGAatcatc
tttttcaaaaataatgctGATAAGAAATCAGAATCTAGATCGTCCATGAC
CAAGATACCTAACACTAAAGCAGCAACAAATCAAGCTGAGACTGCTGCAT
TACATCACAAGCATCAGAAGAAGGACAAAATATTCAACACCAGAGATGAA
ATGAAGATTGACGAACCAGCTTTCCTCACACTTCTTCTCCCAGAAGATGA
TGAAAGGATTTCAACTCAAAGAGGAATGAAGAGATCAACCTCAGTTCACA
GACGATCGAAAAATCCACAAGAGCGTCTTCACAAACCTACAAGATCGAAG
ATTCCAAAGAAAACTAAATCAGTCGATCTAAAGGCTTTAGAGTTTAATGG
CACTGAATGACCAATATACTCACTGGAACATTTCAAAGAATTGTAGAGGA
TTTTTTCTGTAGTAGAGAGATAAGTTAGAGTACATTGTTTTATTATGGAA
TTGAAGAACGGCTTGTTTTGAAAGTAACATTAATATTAAAGGTGTTGTTG
AGGAAAACAACACACAAAGTATGTATGACTTTGTTGAAAGATCACGATTT
AGAACCGTCCTTCGATTTCAACGTTTAAATGGGGATTTTCAAGGAGCATC
TTATTGAATAATTGATGCTTATTAGTTTAAAGGAGTGGATGTATTATATC
AAGACCTTAAAATATTACGAACGCAATACTATATTTTGGACTCGGCTTGG
AGTTGAAACTGTTGATATGAAAAATACGTAGATGAAGAAATTTACCAATG
ATGGCCTTTTGTTTTGGTTCataaaaactattttctttaagaaaaattaA
CAATTGTTGGATTTTATTTTCGTTTCATGGAAGTGTATT Run BLAST on NCBI transcript from alignment at sc0000145:477086..479222+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012538 ID=TCONS_00012538|Name=TCONS_00012538|organism=Clytia hemisphaerica|type=transcript|length=2137bp|location=Sequence derived from alignment at sc0000145:477086..479222+ (Clytia hemisphaerica)
AACACAATACAGCACATTCTCAACAAACAGTCCGACCTCAATATAAAGTA
GCTGATCAAGTTGCAAGTAGTTCTCAACCAAATACCAATGCAAACGTAGA
AGTAGTTCAAACTCCACAAGTCTCTGCTACCAACTATGCTTCAAATACCA
ATTACTATGACCCTCAGAAAGATTACGAACCGGCGGCGCTAGATGCTTAT
CTACAACCAAGTACCGCTAACTATTTCGATAAATATTTCTCACATAACGG
TATCCCTGATCAGCGTCATCATGCCAAAGCGTACAGTTTCTTGCATTCTT
TCTTACGCCACGTCAAAAGTATTACGCACGATCCAGAGTTCTGGAAAACC
CAGCAACCCATCCAAGCTGTTACCCAAACAGCGTTTAAGAGGAACGAAAT
CACAGAACCTATCCTTGAAGGTCACAGCAACATTCGTGATCATGTTGCAG
GACGTATTTTGAGTGAACCTAACTATGTCCTTGGAGATGCAGGTGATGTA
AAGAAGCTTCTTCATGGATCTGGATTCAATACATTCAATGATGAAGATAT
GAAACTTCTCTTTGGCTCGCCAGCTGCCAAGAAATCAGAAACCAATGGAG
atgaaatttcaaagaaaactaTAACTAAAGCGTCGAGAAATGGAatcatc
tttttcaaaaataatgctGATAAGAAATCAGAATCTAGATCGTCCATGAC
CAAGATACCTAACACTAAAGCAGCAACAAATCAAGCTGAGACTGCTGCAT
TACATCACAAGCATCAGAAGAAGGACAAAATATTCAACACCAGAGATGAA
ATGAAGATTGACGAACCAGCTTTCCTCACACTTCTTCTCCCAGAAGATGA
TGAAAGGGTATGTTAAGGTTTATGGTATTTCTGCAATTCTTTGTAAATAA
TATTGCAAACTCATTAAAGCAGGTCTCCACTTTCTCGcaacatgagcgaa
aactttttcatgtttttgtaaggtcggttgaaaaatgaagcaaattcatt
ggtcgaaattgacgtaacggatgaaaaaaagtagaacttccttcaacttt
ttttttattttctcgaaacttttttatgacgtaatcttttcttcaggcaa
aaaaaggttaagaaaaaaactgtcgccaatttcgcgcgaaagtggagacc
cgCCTTTATtcagttttatatttttgatctAACTACATGTGACTTTTTCC
CTAACCGATTGGCTATCTTTTGTATGAGGAATAAAGTTTCTTAACTGGTT
AATAGACAAACTTAACATATTTTAAAGGGGATTTAAATTTATAACAAAGA
AAGGCAGTGTCGCAATATCACGATTAAAATATttaaggaaaaaaatctaa
CAGGTAAACAAACCTCGAAATCTCAGAATCCTATCTTCTTCAAAAAATGT
CCAATCATGTGAGATTGACCTACCAAAAAATCATCCTGGTTTATTTCATA
GATTTCAACTCAAAGAGGAATGAAGAGATCNAAATCATTCTGGTTTATTT
CATAGATTTCAACTCAAAGAGGAATGAAGAGATCAACCTCAGTTCACAGA
CGATCGAAAAATCCACAAGAGCGTCTTCACAAACCTACAAGATCGAAGAT
TCCAAAGAAAACTAAATCAGTCGATCTAAAGGCTTTAGAGTTTAATGGCA
CTGAATGACCAATATACTCACTGGAACATTTCAAAGAATTGTAGAGGATT
TTTTCTGTAGTAGAGAGATAAGTTAGAGTACATTGTTTTATTATGGAATT
GAAGAACGGCTTGTTTTGAAAGTAACATTAATATTAAAGGTGTTGTTGAG
GAAAACAACACACAAAGTATGTATGACTTTGTTGAAAGATCACGATTTAG
AACCGTCCTTCGATTTCAACGTTTAAATGGGGATTTTCAAGGAGCATCTT
ATTGAATAATTGATGCTTATTAGTTTAAAGGAGTGGATGTATTATATCAA
GACCTTAAAATATTACGAACGCAATACTATATTTTGGACTCGGCTTGGAG
TTGAAACTGTTGATATGAAAAATACGTAGATGAAGAAATTTACCAATGAT
GGCCTTTTGTTTTGGTTCataaaaactattttctttaagaaaaattaACA
ATTGTTGGATTTTATTTTCGTTTCATGGAAGTGTATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012538-exon-sc0000145-1491911889:477086..477942 | TCONS_00012538-exon-sc0000145-1491911889:477086..477942 | Clytia hemisphaerica | exon |
| TCONS_00012538-exon-sc0000145-1510915933:477086..477942 | TCONS_00012538-exon-sc0000145-1510915933:477086..477942 | Clytia hemisphaerica | exon |
| TCONS_00012538-exon-sc0000145-1575043694:477086..477942 | TCONS_00012538-exon-sc0000145-1575043694:477086..477942 | Clytia hemisphaerica | exon |
| TCONS_00012538-exon-sc0000145-1491911889:478591..479222 | TCONS_00012538-exon-sc0000145-1491911889:478591..479222 | Clytia hemisphaerica | exon |
| TCONS_00012538-exon-sc0000145-1510915933:478591..479222 | TCONS_00012538-exon-sc0000145-1510915933:478591..479222 | Clytia hemisphaerica | exon |
| TCONS_00012538-exon-sc0000145-1575043694:478591..479222 | TCONS_00012538-exon-sc0000145-1575043694:478591..479222 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000145 | supercontig | sc0000145:477086..479222 + |
Blast
The following BLAST results are available for this feature:
|
