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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012527 ID=TCONS_00012527|Name=TCONS_00012527|organism=Clytia hemisphaerica|type=transcript|length=3464bpRun BLAST on NCBI transcript from alignment at sc0000145:384451..395043+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00012527 ID=TCONS_00012527|Name=TCONS_00012527|organism=Clytia hemisphaerica|type=transcript|length=10593bp|location=Sequence derived from alignment at sc0000145:384451..395043+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00012527 vs. Swiss-Prot (Human)
Match: PAR12 (Poly [ADP-ribose] polymerase 12 OS=Homo sapiens GN=PARP12 PE=1 SV=1) HSP 1 Score: 185.652 bits (470), Expect = 1.743e-48 Identity = 150/435 (34.48%), Postives = 222/435 (51.03%), Query Frame = 3
Query: 1020 GSLS--LLTPTKKDFICGFYLKNLCINGDNCSAVHPPYSLPYCWYYQIQGETEVSICPKDVTEAIEEKFRDVKSTDF----ATSNFRVNFEDLTQSRYSDLKATFKRISTPSTALSKGTNEPLTTTWKWYWYDD-ETWHEY------HLPGTATSEMIENKYDMF--KNHDG-PTKMDFRTAQFYYSLRFKLMNQKNL--KTNKRRCVRRRPAPFQNESKQRTLSASL---DDFPVHWTSA--PVTGY--IAIPVKNDVRSKIERDFAQTMEGRMNYNIISVEEICNRQLYRQYVSKKKNMEESNKGQ-VKEMQLWHGTRNDIVEKICQQNFDWRMVEKH--SFGKGSYFAXXXXXXXXXXXXDPVSGICSMFYADVLVGYCAKGCSTYTRPPERE--KNILYDSCVNDIIDPSIFVIFERDQFYPRYLIKYKRS 2234
GS+S L+ + D IC ++++ C D C VH + LPY W + +G+ E D E IEE + + K + S F + + Y +A +R+ST S+ ++K + LTT W WYW D+ +W EY H T +S +E Y + DG + F+ + Y L FK QKNL T K+ C R + Q+ + +T + P +W S+ P G+ I + ++ K+ F +T+ Y + +E + N L+ Y +K M++ N G+ V E QL+HGT V+ ICQQNFDWR+ H S+GKGSYFA+ +YS Y+ SD + +MF A VLVG +G +++ RPP +E N YDSCVN + DPSIFVIFE+ Q YP Y+I+Y S
Sbjct: 260 GSVSPNTLSQEEGDQICLYHIRKSCSFQDKCHRVH--FHLPYRWQFLDRGKWE----DLDNMELIEEAYCNPKIERILCSESASTFHSHCLNFNAMTYGATQA--RRLSTASS-VTKPPHFILTTDWIWYWSDEFGSWQEYGRQGTVHPVTTVSSSDVEKAYLAYCTPGSDGQAATLKFQAGKHNYELDFKAFVQKNLVYGTTKKVCRRPKYVSPQDVTTMQTCNTKFPGPKSIPDYWDSSALPDPGFQKITLSSSSEEYQKVWNLFNRTLP---FYFVQKIERVQNLALWEVYQWQKGQMQKQNGGKAVDERQLFHGTSAIFVDAICQQNFDWRVCGVHGTSYGKGSYFARDAAYSHHYSKSDTQTH--TMFLARVLVGEFVRGNASFVRPPAKEGWSNAFYDSCVNSVSDPSIFVIFEKHQVYPEYVIQYTTS 680 The following BLAST results are available for this feature:
BLAST of TCONS_00012527 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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