TCONS_00012525 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012525
Unique NameTCONS_00012525
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length909

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012525 ID=TCONS_00012525|Name=TCONS_00012525|organism=Clytia hemisphaerica|type=transcript|length=909bp
acagAAACTAAAtaattaaaacataaaaaatgctGTCGACAGTCGCTCGA
AACACGCGTCGTGCACTTTCAAAACAAGCTCTGCAATCAGTACAAGTGGC
ATCAAAACACACTTTGCCAGCTCTAGATTATGAATACTCATCATTGCAAC
CAATCATCTCTGAAGAAATTATGACCCTTCATCATTCTAAACATCATCAA
ACGTACGTTAATAATTTGAACGCCGCGGAAGAACAGCTACAAGATGCTCT
GTCTCAAGGCGACTTACCAAAAGTGATAGGACTTCAACCTGCACTTCGAT
TCAACGGAGGAGGACACATCAATCACACCATCTTCTGGACCAATCTCTCA
CCCAACGGTGGAGGCGAACCCAAAGGTGATTTGTTAGCAGCGATCGTTCG
TGATTTCGGATCATTTGCAAACATGAAAGAACAATTGACGAATGCAACTG
TTGCTGTTCAAGGCTCCGGTTGGGGATGGCTGGGTTATGATAAAAAGACT
TCAATGTTGACAATCGATGCCATGGCAAACCAAGATCCTCTACAATCGAC
CAGCGGACGTATCCCGTTGCTTGGTATTGACGTTTGGGAACACGCTTATT
ACCTACAGTATAAGAACGTTCGTCAGGATTACGTCAAAGCCATCTTCGAT
ATTGTCAACTGGTCAAATGTCTCTGAACGATACGAGAACGCTATGTGATA
GTAGGAAAGAGCTTATTATACTGTCTTCATTTTCTATCATctctggaaaa
tttctttcaaatccaGCGCTGACAGGCTGAGAGATATGATTGATTGGAAC
TTTTTGTACAAAATTAAATATGGTgaatttaaatcttttttttaatttac
caATTTAAATTTCTTCATTAGAAATTTTAGAAAGAATATATTTTTAACAA
CTAGAAATT
Run BLAST on NCBI

transcript from alignment at sc0000145:338961..357821+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012525 ID=TCONS_00012525|Name=TCONS_00012525|organism=Clytia hemisphaerica|type=transcript|length=18861bp|location=Sequence derived from alignment at sc0000145:338961..357821+ (Clytia hemisphaerica)
acagAAACTAAAtaattaaaacataaaaaatgctGTCGACAGTCGCTCGA
AACACGCGTCGTGCACTTTCAAAACAAGCTCTGCAATCAGTACAAGTGGC
ATCAAAACACACTTTGCCAGCTCTAGATTATGAATACTCATCATTGCAAC
CAATCATCTCTGAAGAAATTATGACCCTTCATCATTCTAAACATCATCAA
ACGTACGTTAATAATTTGAACGCCGCGGAAGAACAGCTACAAGATGCTCT
GTCTCAAGGTGAGGGATGTCATTTGATTCAACCTACAGATTATAATTTTA
ACTATACACACTCATTTTTATTAGCATAAGGGGAAATCGGATCGAGGCTC
ATTATGCTTAGGGATATGCTTTACAACTTtacaaatgcttttttcaagAC
ATCGTAAATTTTGacagattttcattttccttttactTTTATATGATTTC
GTTGTGATAGAGTATTCTTTGTCTACCTCACTGTCTCATTCTGTCTCATT
GACTCtattttcgaaatttgatgaaaaaatttctcagcCTCGAGCTATGT
TTTGCATTATGCTTTTTTGCAATtattattttgtgattttgagcctaagt
atgtttgaaaatgtttaaaaatgcgTTATTTAGCGCAATTTAGTAAAAGG
AATGAATACGTAGTGTTGGTGTTATTTCTGAGGTCGGGGGTCGTTTTTTt
cgtttgtcgttctttttgccGTTTtcaatagttatttgtcgttcttttta
gatggtctggaaacgttagTTGAACAATCTCTTAAGATTTATTATTAAAA
TTCGATGGCCGACTTCTAAAGATAAACTTAATAAATTGATTTGTGTCACC
ATTTATAGCTTGTTGAGCTAAGATTGGGTTTCCTGACGGTCACTTTATTT
CATAATTAAACCAAGCTAGATAatctaagtaagtaagtttacGAATGAAG
TCAACGGCGACCCAGGGCGACCCGAAGATTTGCTTTTTCTTAGGCTGTCT
ACCTGAATGTGGGAAGGAAATCTACACGCTCTAATTTGAACatatattat
tcgaatctttgaATGATCCGAATTAAAACATTGGTCCTCTCAACTAAAAA
ATAGTGTAAAATAGTAATCTGAACTTTTTCTAGAATTCGAAGAAAGTATT
TATCCCTTTAAGATcggattagagagagtcaactgtatttaaaCCATCAG
TCTTGTACTTGATCTTTCATTGGTTGAGAGACatcttattttttcattca
tatTATTATCATTTTTCTCTCTCACATAACGCGGCTGATAACCGAAGTAT
TGATTGACGCCAAATGAGTTAAGTAAAGCTGAAATTGCAGATGACGTAaa
acgataaactcggtatacattATTTTTTCAGGCGACTTACCAAAAGTGAT
AGGACTTCAACCTGCACTTCGATTCAACGGAGGAGGACACATCAATCACA
CCATCTTCTGGACCAATCTCTCACCCAACGGTGGAGGCGAACCCAAAGGT
ATAGACACTTTTGATACATCATTGTGCTGGTCCAAATTGCTTAGCCCAAG
ATTGGGTTAAACTCTTATACTAACTTTATGCCTATGATTGAAACATGATG
GATTCATATATGGCTTAGCTCTGGCCTGTCTAGAGATGATGCTATTATAA
TCATAGTGTCAGCCCCCCAGAAATCTAAGAAGCACCTAGACCAGGTTAGG
GATTGGGGGCTAATATTTTGCAaatctttggggttacctattcattggGG
TACCTAGCTGTTTTGATCGAAGCTCTGGGGNACATTATTTTTTCAGGCGA
CTTACCAAAAGTGATAGGACTTCAACCTGCACTTCGATTCAACGGAGGAG
GACACATCAATCACACCATCTTCTGGACCAATCTCTCACCCAACGGTGGA
GGCGAACCCAAAGGTATAGACACTTTTGATACATCATTGTGCTGGTCCAA
ATTGCTTAGCCCAAGATCGGGTTAAACTCTTATACTAACTTTAGTCCTAT
GATTTAAACATGATAGATTCATATATGGCTTAGCTCTGGCCTATCTAGAG
ATGATGCTATTATAATCATAGTGTCAGCCCCCCAGATTGCACCTAGACCA
GGTTAGGGATTGGGGGCTAATATTTTGCAaatctttggggttacctattc
aatGGGGTACCTAGCTGTTTTGATGGAAGCTCTGGGGACTGTGTATATTT
tccatattgaatatttcaaaatatttaaaattattgaattttttaccCCA
GCGCCCAGTTTCCCTTCTAATTTAGATTCTTACTTACTTCTTTCCACGtc
atcttttgctatatttttcaaatgtgattgttttgatttacagccgccat
cCTAATAGCATAATAACAAAGTTTTTTTCTCATGCGTGTGCGCTTCCCGC
GCTAGCATAGAGAAGGTAAAACCTTATTATAAGAAagggggtacctaact
caaagcaatttctcaaggggacctaactcgttgggggcgccatgcttcaa
tgggggcacctgaaaagtgggctgaaaccatgataATGCTTATGAGATGA
ACGAGAGAAACTCTGTATAAGACGACTGAAGAAGAATTTCGCTCAATTTA
CGGTATAGGTATATATTTACAAGGTaaataattaagaaaaaaatccatga
tgagaaaaataatttacaaaaattgagaaataggaaaaaatctgcgaaga
aaaaaacaaaattatttataTAAAAGTTATTTACAAAATCCtaggttaat
tttttttgatttttatgaaaatattaaatatacatttgataaagaataaa
taaatgcGACGCTACGGCTGATGAATGAAATCAGAGAAATTGATGACCGA
AATATTTGGTTCTGTATTCCTCTGCTTGTCGCctgaaaacgaaaaaaaag
agggtgattaaaatgttgTACGATGAGTTTGTGTCAAGTGCCAACAACAG
AAGAATGTTTTCActtcaaaacattaaaaattagTTCCAGACAGATCTTT
TTGTTGAAAGGANAAATGTTTTCACTTCAAAACTCATTAAAATTAGTTCC
AGACAGCTCTTTTTGTTGAAAGGATTGTCAATTTACTTGTCTTCATTACT
TGAACACATTCGCGATTGACTTCTTTAACAATCAGATAAGGGGAACACGA
AAGAAATATTCTATTGAAATTTACTTGCTTAcacattttgtttgtttgag
cCATCACGGAGGTTGGAGGCTTCTGCAATGTCGCCTGGACCGTACTCGAA
GTAATTTTGCAAGAGGTTGTAAATCCTGAAAAACGAAGAGAACGGAAGAT
GACTTATATTCATTAGCTTTAGATTCAGAATGTCATCCAAACCTTGATTG
CGCAATTTTTATGAATTCGGTTGGAATTCTATCACTCCTAGAACAAACAT
CGAACTAAATCTTAAACGGTAAAATGCTAACTACTTCGAAACAAATTCGA
CAATCAAATCTTAATTGATGAATTAGATTCGATTTAATTTGATTTGGTCT
GGTGTTCGTTTCCTTTCGATTGCAATCGTGTGATAACGAATCGATTGTAC
GAAGATACTTACTTTGAGTTGGGTTGAGCATAATCGATGACAGTCTTATT
GTCGAGATCTTCGTAAAGAGGGTTCATCTGGTGAGCCATCAATAATTGAA
GAATATCTGCTCATTGATCAATGACTGCAATATGAGCTGTGGTTCTATAA
TAAAAGTCGAAGTTGAAAGAGTTAAAGGATGGGAATTGCATATTGATGCA
TTTGATTCCATTTTATCTTTAAACGAATATGTCATAAGATATGAATTTGA
ATGTGAACAGTGTTATCTTTTTCGCCACTTGGATATGCGATTTCCTCAAA
AGCCCTGGAGAGCTATTAATGTAGGAGATTTTCTTCCAACAAAGCCAAAA
CAAAGCAGATACTCGTAGAACATAATGTTGTTACAATCACTTACCGACCG
TTGCCTTCTCTGGCGTTCACATCAAGTCCTTGGTGCAACATGTAATCGAT
ACACTTCAGAACTACAATGTGTTTATTGTTCATCAAAGCCATATGTAGAA
AGCTCATTTCACCCAATCTGCTTTCACCCTGtggagaaaattgaaatttc
aataagCCTACAATTTCATTTGatcaaaaatagctaaaatcgACGAAATA
GATCCAGTTTTTCATGCAGAAAATAAACAATGTTACTTTGTATTTTATCC
CAAAATGCTTCTTGATGCCAAAAATACAACTTGAAGATGTTATTAAGATG
TCTAGGTTCTAAGGCCTCTTAAAGGGAGAATGTGGTGTGTAAACTTACAT
TTATTCTTGGTGAGACGTCCCACAAAAGTTTGAACATTTCGAAGCGTTCA
TCACCATAGAAATGCAACAAAAGAGTCAAAGCATCACGAGAATCTTGTGC
CTTGATACGTGTGTTAGCGCCTGCTTTGATCAACGCTTTGACGCACTCGA
TGGAACCGATTTCAATTGCCTAAATAGAAGAAATTTATTCAATATGTAGT
AAATATGGTTATTGTACAGCTTATTTTTGTGTTCTTGATGTTAACTGATG
GTGCCAGAATCACCAAAAATAGGTTTAATATTCAATTGAATCTTCATTGA
AAAACACAGCCCAAGCTCTCTGAAAAATATACCAACGTAAAAGAATTTCC
CTGATGGAATTAATCCTTATtcataattttcactaaaacaaaAGCCTGTC
TTAAGAAAATCTTGAAAGCTACCTAACACCGGTGACACCAGTCACTTACT
TTATAGAGTGGAGTTTTGCCATGGTAGTCTTGCTTGTTGACATCGACACC
AGGACATCTCAATAAGATATTTAAAGTTTTAATGCATCGCCAGGAAGCGG
CGAAATGTAGTGCGGTCCTGTTAAAATGAAGATAAATACATTGATAGTCC
CCATGGATGTAAAACCACTTCAAATTAGAGGTTCAAatttctctctgtaa
ttcgaatctttctccaatttaaagaacattttttcatCCCCCGAAGATCG
AATTAGACAGAGAGAAAGTCAATGTATAAACAATTTTCATCATCCTGGGA
CGAACCAGGCGAGGAAATCTTTTGGCTTTGTTTGATGATCATAGCATAAG
GCTACTCTGCTTTGTACTTTTTGTACTTTGTAGCGCTTCTAAGAACTATC
TTTCATATTTTAGTCCATCGTTTTACCTCTTTTGTGCGTCAACTCTGTTG
ATTTtctgttgaaatttttcttccttcAACACTTTGCGTAATTTCTTCAA
TTTACCTTTCCAGGCGAATCTAAAAGTGGAATAGTAAAATGATTGAGAAT
AAATCTTTATTCGTCTTTGTGTTTGAGTTTGCTTCGGTCTGTCTGTACCA
GACCAACACCATATCTATACAGAAATTCTAAGGNTTCGTCTTTGTGTTTG
AATTTGCTTCGGTCTGTCTGTACCAGACCAACACCATATCTATACAGAAA
TTCTAAGGTTTGGCGtaagtattttttcaattttttttacagtgCTCGAT
ACATATGTAGAGGGATGTCAGTAATTCTTAGTTGAAGATTTTCACCTGGC
AGTTGCAGGATAAAAACGTGTCTTTTCTTCCTTACTAAGGTTTGGCGTAG
AATCTTTCTCAAAAGAGACAATATAAACATAAGATtgtcaaagttttttt
catcaacaaagttttttttgtataccatagtaaaaagaaattaaaagaat
gatTTGTCATTCATTAACGAACATACCTCAAAATAGCGGAAAGTTCCTCC
TCTTTTACTGTCCAATTAGGATAACTGCCTTCTTGAATTTTTCGTCGGAC
GCGCAGCTCTTCGACGTAACGTGGTGGTACGCCGTAATCATACGCGTTAT
CGATCAAGAACTTGCAATACGCGTCTGCAGACATACGGTGACCGGCACCT
TCGTCAATCGTCAACGCGTTCGCGACTTCGTGACGAAATTTCTCCATCAA
TTCTTCNTACACCGTAATCATACGCGTTATCGATCAAGAACTTGCAATAC
GCGTCTGCAGACATACGGTGACCGGCACCTTCGTCAATCGTCAACGCGTT
CGCGACTTCGTGACGAAACTTCTCCATCAATTCTTCTGTGTTCTCACGGC
GTTCATCTAACGTCATTGCGGACGCTTCGTAACGTCGATGTTTCGGAACC
GGAACGATTGTCCGGTTTCCAATAAATAAGCCGGTTTGTTTTTCGCGTTC
GGCTTTCTTTTTCTCATGTTGTCGCCTGAGATCAGCGTCAAACCTTTTGC
TCAGGTTATAGAAAGCACTTTTTCGTTCTTTGCCTGTTTTTTGTGGTACG
TAGACCGTGGCTCTCTTGACGGAAGCATTGACTTGCGCTACAGCTTTATT
TACTTTGTCGTTGTATGTTTCTGAATGGACAGAATATTTGATTGGAAGCT
GTGGCAAAACTTCTTTTCGCTCACTCGCTTGATCTGTGAAACCAAAAAGT
AACGCAAAATGTTTAGATTATGACAGTGACCTTATTAGGAGACACTTTAA
ACGTTTCTGATTTAAGTTTAGATTCCactaaatttttctttgaaactaat
AAATTGCAAAAACTTTAGGATATGTTATTTGAACAACACAATGAAAAGGT
CTCCTCACCTTTATTTTGCTTGGCAGATTTGGCAGCTTCTCgtttctttt
tcaagatttcttgaaatttatcCAATGTCTTCTGGTCTTCATCGTCCATC
TCATGAAACAACTTGCAACCGTTGCTCANTCaagatttcttgaaatttat
cCGATGTCTTCTGGTCTTCATCGTCCATCTCTTGAAACAACTTGCAACCG
TTGTTCAATTCTCGATCCTTTACTGGTCCATGTTCATCTGAAAGTCCATG
TTCTCCGAGATAATCGTTAACAATCGCACGGTAATGCTTGACACGTTCAC
CAGACAAAAGTCCTGGGTCCATGATATTTGTAATACGCTCAACTTCAGTC
AAACTTCGGCGAACGGAATCGAACTGCATGAAACGCATCATGGTTTTATC
CAAAGCCTCCTCGCTAATGGTGGAGTCCAATTTCCTCAACTCATCCTTAA
GCTCTGGAGTGCACAGCTCCAAGCATTCTTTAAACACGACTCTGGCTTTC
CATTGAGCTTTAGCCTCAATTTCGACTTCTTTTAGATGTTTCAATTCAAC
ATTGACTTCTGATTGAACCTCGGGTATTCCTGATGACTCAGGGTATTGCA
AGGAAGATGTCTTCATTCGTTTCTCAGATGGAGTTGGTCGTAAGTGCAAT
GATGTGCTTGATGCAACTTTCTTAGGTTCAAGGTCATTCATATATCTAGA
GAACCTCATTTTATGATTTGATGGTACCATTGTTGGTTCTGGTGATATGT
TTAAACATTCAAAGACAGTAGAGTTTGAGTACCTGAATAAATTTGGCTTA
CTATCTGCCATGGCTCCGCTTGTTAGACAGTTCTCATAGAAATTAACGTT
GGGTTTGATGCATTGCATGGATTTCCGTCGACCGCCGTTGAAATTGATGC
GGTTCTCACGCTCTGAAGgaataaaaagaaacatgttCAGGTTTATTTTG
GTCACTTTGCTGTGAAAGAATCTGAACTGATATGATTTCAAAACGTCTGA
GCCGTCTTGTTCTCGACCCAGCGGAACTTCAATTCACGCTATCATGCAAA
TTATTCGACAGCTTAAATGGATTTCATTCgagaaaaatagaagaaatgCT
CCTATTCACTCTTTGAGATTAGGATCATGAAAATAAGAATCTATAAGAAA
AGCAAAGAAATTAAACAACTTACCCATGATTTGTTCAACACGTTTCTCCA
TCTCTTTTATGTGACTTTGCTTCTTGGCGTAATGTTGTTTTTCAGGTGCA
TCTGTCGCTTTTGATTCAAAAGGAAGGATCTCTCTTGAATCGCCTGTTCA
ACGACATCCTGCTCCTCTTGCCAAAGACCCAAGTCTTGGCACGGCaaaac
aaaaacctttaaaGAGTTCCTCATTTTTATGACGAACTGatggtttttat
ttaaaaaaaactaaattctcTGTTTATGCAACAGAGTCTggttgattttt
gattgaattgacttcttttaatccaattaaaatatatttcactATAAATC
CAACTTTAAAAAAgctcttttcaaacttttacgGCTTGGTAGGTTGGGTT
TTCAAACGAAACTGAATTGAATTCATAAAAGTGGCTTTCTTtatattatt
tgacgtcaataagtttttgtgacgtcaatttttgatatgTTATCAAGTTT
CAtcgaatttttgtattttttcttttttttcgcgaaagtcTTTATGATCA
ATACggcgaaaatctgaaaataaatatttcttgaaaatagTTTTGTCGGT
TTCATAAAAGATGTTTCAGGataattttaagataagaatTTTTAGcgatt
tcaataaattttgattgtaATCAATTTTTACAGAAGTTTGTGGAtaacaa
aaaatcgaaaaacagCTTCATTCTGATCTTGAACTCAAAAGTATTTCATT
TATTCTCTTATCTCTTGCAGGTGATTTGTTAGCAGCGATCGTTCGTGATT
TCGGATCATTTGCAAACATGAAAGAACAATTGACGAATGCAACTGTTGCT
GTTCAAGGCTCCGGTTGGGGATGGCTGGTAAGTGGTGGGTAACTAGTTTT
TGCGCGAACAATTCTTCGCTTTTTTCGTTTTGTTATAAAATCACGTAAAT
TTAAACCCGTGAAGCACAATGTACCGCGTATAATATTAATATATcttatt
ggccctttttacgccggcccttatttaACGCGGGCCCCTTTTACGcgggc
cctttttacgccacagtctaattttgggcttaggccaTTTAAggccgtta
ataacgccaaaacttgtaaaaatggctacttatacttcaaattagtaaat
aatgCTTAAAGGTTTTGGTAGTAAATTGTTGAAAATCCCATTCAAAATTA
CTGATTTTCGTGAGGTCTTAGATATGGATAATTTTtatcttcgaatcata
cctaaaatccctTAAATTGAGAAATGATGATAGAAAATTAACGCcacttt
taggtaaaaattgtaaaatctcggcccttattacgccacgtgcccaaaaa
taacgccaataaaggggcggcgtaaaaagggccgataaggtaagtcTTTG
AGAACGAGGTTTGCAATTATTTTATGCATTTCCGAAAATTGCTTTCCTTA
AAAATTGGGGagagggtggaggatataacagttttcagtgatttaccccc
cggacaaagtgacttttggccccccgtacaattttgatgattttcctacc
acctggacaatatatcctccacccccccccccatgtacggaaGAGCCCAT
TTCGTCAGTTTTGTTATTAAAATATTAGTCTGGCCATCTCTTTGTAACAC
TTCTTTCCTCGCCAACTGACAGGGTTATGATAAAAAGACTTCGATGTTAA
CAATCGATGCCATGGCAAACCAAGACCCTCTACAATCGACCACCGGTAAG
GAAAATGCATTAGTATCTTTTACAGACATTCATAAATTTAagtatttgta
aagttttaagcaAAATGAGACTTAATTTTCCAGCTTTATTATACttggct
acgtcatatcttccttcgtttccagcgtaaaactcctactcgggtaaggc
ctaaaagccttgAGCTGTATATTATGTAGACTATATTATCCCTGAAAAtt
actgaaataaaaattatgatagAAAATGATGCATGCTAAAACTACTTTAA
ACAGGCCATCCAAGAAAATCAATGACATTAAATTAACCATTGTTAACCCT
TAGTGTCAAATCGCCACAgcccagatgagatggagtttttataagatact
ttaataattggtcatttgaagtaataaaaatgacgcattCTTTAGGAAAa
gttgttttattactggttaacgaccaaccaaatcaaataagagcttgtaa
aaactccatctcgtccccaaGAGCCAGGCTACCGACCTATGTATTGTCTT
TCATTCCGTTTCTTTATTTCAGGACGTATCCCGTTGCTTGGTATTGACGT
TTGGGAACACGCCTATTACCTACAGTATAAGAACGTTCGTCCTGATTACG
TCAAAGCCATCTTCGATATTGTCAACTGGTCTAATGTATCTGAACGATAC
GAGAACGCTATGTGATTGTAGGAAAGAACTTAAATTACTGTTTTCATTTC
CTGGCTGGATTGAATGAGCAGGTCCAGGGTAATctcttcagaaaattttg
aaaatccaggtctggatcaatttttgtaaaaaactaaaTATGATGAattt
aactctttttttttaatttacgaattaaaatttcttcattagaaATTTTA
GAAAGAATACATTTTTAACAACTAGATATGTCAAAATATATTTAGGTTAC
TCTCTCCCCACCCATTGTCTGAACAAATACCAATACAAAGAAATGCTGCA
TTGAATTATCTTTCAGATTACAATTCGGTTGAGACCTCTATGCAAACTGT
TTGTCAATCTATGACTTGTGACGTAGAGCAAGCCTAGCCCCGTTAATGAA
ACAATGTTTTTGGTAACATGACTTATTATCATACTTTCTTTTAGTTTATG
CTATCTGGTCTTTACAGGGAAGTCTTTCTGATTCTGATATTACTAATATG
TTGCTCTAATAtattataaaatgtttttattttgtagagACTTAAtaatt
aaaacataaaaatgcTATCGACAGTCGCCCGAAACACGCGTGGtgcactt
tcaaaacaaactctGCAAACAGTGCAAGTTGCATCAAAACACACTTTACC
AGGTCTCGATTATGAATACTCGTCATTGGAACCAATCATCTCtgaagaat
ttatgacccttcaTCATTcgaaaaacatcatcaaacgTACGTCAATAATT
TGAACGCCGCGGAAGAACAATTAGAAGATGCTCTGTCTAAAGGTGAGGAA
TGTCATTTAATCTAACTCACAGATTCTACTTCAAGATTTTCCTTAAATTC
AACCTGTACTAGACCGATTGGGTCAattctttctgtaattcgaattagGC
CCCCTTGGCTTAAAAGTGGTATAATAAATACTCTCTATTCCGAATCTTTC
TATTATGCAATAGAAGTGGCCCCTTTAAGATGGAATTATAGAAATAGGTA
TTTAAATCATCTTTTACTtgaactttttcattgattgatTGGCATCTTAT
TTCTTCAGCCGACTTCAACCAGCACTTCGATTCAACGGAGGAGGCCACGT
CAATCACACTATCTTCTAGACCAATCTCTCACCCAACGGTGGAGGCGAAC
CCGAAGGTAAAGACACTCCTTATATGTCGGCCAGATTGGTTATTCCGAGA
TTAGGTTCTTTAATTTCTACCTGATTTGCGAAAATAATTCTACGCGAAAA
TCTATCCACTTAAGGTTATCTGAAACTAACTGTCCTATGATTTAAACCTG
ATTTAAAACGTGGTCGATTTATATATATCTGGCCTATCCAAAGATAAAGG
AGAAAAGACGGATATGAGACGAGTGAAGaagaattttaataaatttacgg
TATAGGTATATATTTACATGGTAAATAATTAAGAACAAAATCCAcgatga
gaaaaataatttacaaacattggaaaatgaggaaaaaatctgcgaagaaa
aaacaaaattatttataaaaaagctattacaaAATCCTaggttaaaattt
ttgatttttatgaaaatattaaaaaaacgtttgataaaaaatttataaat
atataGACACAACGGCTGATGAATGGAATCAGAGAAATCTATGTCCGAAA
TATTTGGTTCGGTATGCTTCTGCTTGTCggctgaaaacgaaagaaaagaa
agaccaaCGATTAAAATATTGTACAATGAGTCAAGTGCCTACAAAAATGA
AAACGTcctcaattattttcaaaacttttgagtCTTGTCTCAGATAAATT
TGCTGTTTACTGTATTGAAGGCATTACCAGTTTAATTTTACTTGTCCATC
ATCACATAGACACATTCTTGATTGACCACTTAACCAATCAGGTCTAATTA
ATTAATAATGGAAACACAGAGAAAGAAAGATTCTATGAAATCTACTTGCT
TACATGTTGTGTTTGTTTGAGCCATCACGAAGGTTGGATGCTTCTGCAAT
GTCACCTGGACCATACTCGAAGTAATTTTGCAAAACGttgtaaattctga
aaaacgaagaaaatgaagaaatgagTTATGATCATTCGTTTTGAATTCAG
AATGTAACTCACTTGAAGGTTTGATGAATCTTGGAACAAATCCCGGACAA
AATCGAAATGGTGAAGTGACAGCTACTTCGATTCAAATTCGACGACCAAT
TATTTTCCATTGAATTCGACCGGTCTGTCTTATTTTCCTTGCAATGGCGA
CCGTGTGATAAAGAATCGATTGCACGAAGATACTTACTTTGAGTCGGGTT
GAGCATAATCGATTACAGTCTTATTGTCAAGATCTTTGTAAAGAGGGTTC
ATCTGGTGAGCCATCAATAATTGAAGAATATCTGCTCGTCCATCAATGAC
TGCAATATGAGCTGCGGTTCTATAAGTTGAAGTTGAAAGAGTTAAAGCAT
GGGAATTGCGTATTGATACATTTATTCCATTTTGTCTTTAAACGAATATG
TCATAAGATATGAATTTGAATGTGAGCAATGTTATCTTTTCCGCCACTTG
GACATGAGATTTCCTCATGTNATAGTGATACATTTTATTCCATTTTGTCT
TTAAACGAATATGTCATAAGACTTGAATTTGAATGTTAAGAATGTTATCT
TTTTCGCCACTTGGATATGCGATTTCCTCAAAAGCCCTGGAGAGCTATCA
ATGTAGGTGATTTTCTTCCAACTTAAGCCAAAACAAAGCAGATAATATAA
GTAGAAAATAATGTTGTTGCAATCACTTACCGCCCGTTGCCTTCTCTGGC
GTTCACATCGAGTCCTTGGTGCAACATGTAATCGATACACTTCAGAACAA
CGATGTGTTTATTGTTCATCAAAGCCATATGTAGAAAGCTCATTTCACCC
AATCTGCTTTCAGCCTGTGAAGAAAATTGgatattgaaatttcaatttca
agtcaACATACTATTCCATTACATTAAAAATAGCTAAGATTAGAGCCTAG
AAGACGAAATGGGAACAAATCTTTCTGTAGTGTTATAAGCAGATTTTGAA
CAATGTTAAGTGGAAGAAATTTGCCTCAATGCCTCTTGGTGATAAACATG
TATATCGAATATGTCATTACGATTCAATCGAGGACCTAGGCCTCTTAAAG
GGAGAGTGCGGTATGTAACTTACGTTTGTTCTCGGTGAGACGTCCCACAA
AAGTTTGAACATCTCGAAGTGTTCATCACCATAGAAATGCAATAAGTGAG
TTAAAGCATCACGAGAATCTTGTGCCTTGATACGTGTGTTAGCGCCTGCT
TTGATCAACGCTTTGACGCACTCGATGGAACCGATTTCCATGGCCTAAAT
AGAAGAAATTTATTCATATGTAGTAAATATGGTTATTGTACAATTTATTT
TTGAGTTATTGATGTTGATTACGCCCTAGAACCACCGAAAAGAGGTTTGG
TAACATATGATCAATCAAATCTCCATTGAAAACATAGCTCGAAATCCCCG
AACGAATATGTTAAAAAGAATGTCCCTAATGGAATTAATCTTTCTTCatg
attttcactaaaacaaaaagttgtcttaagaaaatctttaaagttACTCG
GTTTTAACTTAAATGAATAGTCACTTACTTTATAGAGTGGAGTTTTGCCA
TGGTAGTCTTGCTTGTTGACATCGACACCAGGACATCTCAATAAGATATT
CAAAGTTTTAATGCATCCCCAAGAAGCGGCGAAGTGCAGGGCGGTTCTGT
TAAagtgaagagaaaaatattgaaagataTAGTCCCCATGGATATATAAA
CACTTCAAATTAGAGTGTGAATACGAAAAATAATAGAAGACGTGTCCAAA
AGTTTAAGTTTCTCCGTGTGAGTATTCCTGGAAAAGGAAACACAGTCAAC
TCTCTTTGTTTTGAACCTCtgtttttcgaatctttctctgatTCGAAGCA
AACTGTATAAACAATTTTCATCAGTCTAGACGAACCAGGCGAGGAAATCT
TTTTGGCTTTGTTTGATGATCATAGCATAAGGCTACTCTGTTTTCTACTT
TTTGTACTTTGTAACCCTTCTAGTTTACTCGTCAAATTCTTAGAACTATC
TTTCATATTTTAGTCCATCATTTTACCTCTTTTGTGCGTCAACTCTGTTG
ATTTTCTGTTGAAATTTCTCTTCCTTCAACACTTTGCGTAATTTCTTCAA
TTTACCTTTCCAGGCGAATCTAAAAGTGGAATAGTAAAATGATTGAGAAT
AAATCTTTATTCGTCTTTGTGTTTGAGTTTGCTTCGGTCTGTCTGTACCA
GACCAACACCATATCTATACAGAAATTCTAAGGTTTAGcgtaagtatttt
tttaatttttttttacagtgCTCGATACATATGTAGAGGGATGTCAGTAA
TTCTTAGTTGCAGATTGTCACCTGGCGGTTGCAGGATAAAAACGTGTCTT
TTCTTCCTTACTAAGGTTTGGCGTAgaatctttttcaaaagaaccaaTAT
AAACATAAGATTGTCAAAGTTTAGTCAAAATTTACTTTCATcaacaaagt
tttttttgtataccatagtaaaaagaaattaaaagaatgatTTGTCATTC
ATTAACGAACATACCTCAAAATAGCGGAAAGTTCCTCCTCTTTTACTGTC
CAATTAGGATAACTGCCTTCTTGAATTTTTCGTCGGACGCGCAGCTCTTC
GACGTAACGTGGTGTTACGCCGTAATCATACGCGTTATCGATCAAGAACT
TGCAATACGCGTCTGCAGACATACGGTGACCGGCACCTTCGTCAATCGTC
AACGCGTTCGCGACTTCGTGACGAAACTTCTCCATCAATTCTTCTGTGTT
CTCACGGCGTTCATCTAACGTCATTGCGGACGCTTCGTAACGTCGATGTT
TCGGAACCGGAACGATTGTCCGGTTTCCAATAAATAAGCCGGTTTGTTTT
TCGCGTTCGGCTTTCTTTTTCTCATGTTGTCGCCTGAGATCAGCGTCAAA
CCTTTTGCTCAGGTTATAGAAAGCACTTTTTCGTTCTTTGCCTGTTTTTT
GTGGTACGTAGACCGTGGCTCTCTTGACGGAAGCATTGACTTGCGCTACA
GCTTTATTTACTTTGTCGTTGTATGTTTCTGGATGGACAGAATATTTGAT
TGGAAGCTGTGGCAAAACTTCTTTTCGCTCACTCGCTTGATCTGTGAAAC
CAAAAAGTAACGCAAAATGTTTAGATTATCATTGACAGTGACCTTATTAG
GAGACACTTTAAACGTTTCTGATTTAAGTTTAGATTCCactaaatttttc
tttgaaactaatAAATTGCGAAACTTTAGGATATGTTATTTGAACAACAC
AATGAAAAGGTCTCCTCACCTTTATTTTGCTTGGCAGATTTGGCAGCTTC
TCgtttctttttcaagatttcttgaaatttatcCAATGTCTTCTGGTCTT
CATCGTCCATCTCATGAAACAACTTGCAACCGTTGCTCAATTCTCGATCC
TTTACTGGTCCATGTTCATCTGAAAGTCCATGTTCTCTGAGATAATCGTT
AACAATCGCACGGTAATGCTTGACACGTTCACCAGACAAAAGTCCTGGGT
CCATGATATTTGTAATACGCTCAACTTCAGTCAAACTTCGGCGAACGGAA
TCGAACTGCATGAAACGCATCATGGTTTTATCCAAAGCCTCCTCGCTAAT
GGTGGAGTCCAATTTCCTCAACTCATCCTTAAGCTCTGGAGTGCACAGCT
CCAAGCATTCTTTAAACACGACTCTGGCTTTCCATTGAGCTTTAGCCTCA
ATTTCGACTTCTTTTAGATGTTTCAATTCAACATTGACTTCTGATTGAAC
CTCGGGTATTCCTGATGACTCAGGGTATTGCAAGGAAGATGTCTTCATTC
GTTTCTCAGATGGAGTTGGTCGTAAGTGCAATGATGTGCTTGATGCAACT
TTCTTAGGTTCAAGGTCATTCATATATCTAGAGAACCTCATTTTATGATT
TGATGGTACCATTGTTGGTTCTTGTGATATGTTTAAATATTCAAAGACAG
TAGAGTTTGAGTATCTGGATAAATTTGGCTTACTATCTGCCATGGCTCCG
CTTGTTAGACAGTTCTCATAGAAATTAACGTTGGGTTTGATGCATTGCAT
AGATTTCCGTCGACCGCCGTTCAAATTAATGCGGTTCTCACGCTCTATGG
AAATAATATTAAAGCATAATCAAGTTTATTTTGGTCACTTTGCTGTGAAA
GAATCTGAACTGATGTTATTTCAAGACGTCTGAGCCGTCTTGTTCTCGAC
CCAACGGAACTTGGGAAATCATGCAAATTATTCGACAGCGTAAATGGATT
TCATTCGAGAAAAATAGCTCCTATTCACTCTTTAAGGTTGGGATCCAGAA
AACAAGAATCTATAAGAAAAGCAAAGAAATTAAACAACTTACCCATGATT
TGTTCAACACGTTTCTCCATCTCTTTTACGCGACTTTGCTTCTTAGCGTA
ATGTTGTTTTTCAGGCGCCTTAAAGCAGCTTTGCCACTCTCCCTTCTCTT
GCTTTTGATTCAAAAGGAAGGATCTCTCTTGAATCACCTGTTCAACGACA
TCCCGCTCCTCTTGCCAAAGACCCAAGTCTTGGCACGGCaaaacaaaaac
ctttaaaGAGTTCCTCATTTCTATGACGAACTGatggtttttattttgaa
aaatctaaattctcTGTTCCTGCAACAGAGTCTGATTGATTTTTAATTGA
ATTGACTTCTTTTAATCcaattaaaatatatttcactATAAATCCAACTT
TAAAAAAGCtcctttcaaactttttgcGGCTTGATAGGTTGGGTTTTCGA
ACGAAACTGGATTGAATTCATAAAAGTCGCATTCTTtatattatttgacg
tcaataagtttttgtgacgtcaatttttgatatCTTAAATCAATTTCATc
gaattttggtattttcatATCGCGAAAGTAAGTCTTTATTGATCAATACG
GCGAAAGtctgaaaaaattatttcttgaaaatagttttataaaagatatt
tcaggataattttaagataagaattttaagcgatttcaatagattttgat
tgtAATCAATTTTTACAGAAGTTGGTGGAcaacaaaaaatcgaaaaacag
CTTCATTCCGATCTTGAACTCAAAAGTATTTCATTTATTCTCTTATCTCT
TGCAGGTGATTTGTTAGCAGCGATCGTTCGTGATTTCGGATCATTTGCAA
ACATGAAAGAACAATTGACGAATGCAACTGTTGCTGTTCAAGGCTCCGGT
TGGGGATGGCTTGTAAGTGGTGGATAACTAGAAGAAATCTTCGCTTTTTT
CGTTTTGTTAAAAAATCACGTAAATTAAAACCCGTGAAGCACAATGTCTC
GCGtataatatttctaaaaatcttaggaatgaaaaatgtcaaatacaCAC
TTCTCCAGATAAATCAACAGCATTGCGGGCCTCGTTTCTAAATCAAATGA
TTGCTTCAAACGACATTTACACACGTAATATGTTAATATGTTTTCCCAAA
AGACCGTGGATTTTGATATAAAACCGTAAAACTAAATATTGCAAACATTA
TGTCTGGCGACTGAAGTATCGTAGCAATATAAAGTCATTTAAAACGAGGT
TTGCAATTATTTTATACGCATTTTCGAGAAAAGTGTATTtacgaaaatca
gcgaaaattttattgatgttttatcaaaatattggttTGGCCCCCTCTTT
TATAACACTCGCTATTCGTCTATAACACACTTTCATAACACTCGTCTATT
AGATTTGAGTTAGGAAATGTGTTATATTGTTTTCTCCTTGACCAGAAACA
AGAAGTAGGTTGGATTAAGGAAaggttcgaataatagaattaGAGAGCCA
CTGTATTGAACAATTTCTTTACCAACCAACAGGGTTATGATAAAAAGACT
TCAATGTTGACAATCGATGCCATGGCAAACCAAGATCCTCTACAATCGAC
CAGCGGTAAGAAAAATGCATTAGTATCTTTTATACAGACAAGCATAAATT
TAagtttttgtaaagttttaggtAAAATGAGACTTAATTTTCTGGCTTTA
TTATCCCTGAAAATTACTGAAATAAAGATTATGATAGAAAAGGATGCTAA
AACTACCTTAACAGGCCATTCAAGAAATTTAATGACATTAGATTAACCAT
TGTAAACCCTTAGTGTCAAATAGCCAGAgcccagatgagatggagttttt
ataagatttcttaataattggtcatttgaagtaaataaaaatgacgcgtt
ctttagaaaaaggcTACCGACCAAAGTATTGTCTTTCATTCCGTTTCTTT
ATTTCAGGACGTATCCCGTTGCTTGGTATTGACGTTTGGGAACACGCTTA
TTACCTACAGTATAAGAACGTTCGTCAGGATTACGTCAAAGCCATCTTCG
ATATTGTCAACTGGTCAAATGTCTCTGAACGATACGAGAACGCTATGTGA
TAGTAGGAAAGAGCTTATTATACTGTCTTCATTTTCTATCATctctggaa
aatttctttcaaatccaGCGCTGACAGGCTGAGAGATATGATTGATTGGA
ACTTTTTGTACAAAATTAAATATGGTgaatttaaatcttttttttaattt
accaATTTAAATTTCTTCATTAGAAATTTTAGAAAGAATATATTTTTAAC
AACTAGAAATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007033XLOC_007033Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012525-exon-sc0000145-1491911889:338961..339218TCONS_00012525-exon-sc0000145-1491911889:338961..339218Clytia hemisphaericaexon
TCONS_00012525-exon-sc0000145-1510915933:338961..339218TCONS_00012525-exon-sc0000145-1510915933:338961..339218Clytia hemisphaericaexon
TCONS_00012525-exon-sc0000145-1575043694:338961..339218TCONS_00012525-exon-sc0000145-1575043694:338961..339218Clytia hemisphaericaexon
TCONS_00012525-exon-sc0000145-1491911889:340342..340458TCONS_00012525-exon-sc0000145-1491911889:340342..340458Clytia hemisphaericaexon
TCONS_00012525-exon-sc0000145-1510915933:340342..340458TCONS_00012525-exon-sc0000145-1510915933:340342..340458Clytia hemisphaericaexon
TCONS_00012525-exon-sc0000145-1575043694:340342..340458TCONS_00012525-exon-sc0000145-1575043694:340342..340458Clytia hemisphaericaexon
TCONS_00012525-exon-sc0000145-1491911889:347481..347587TCONS_00012525-exon-sc0000145-1491911889:347481..347587Clytia hemisphaericaexon
TCONS_00012525-exon-sc0000145-1510915933:347481..347587TCONS_00012525-exon-sc0000145-1510915933:347481..347587Clytia hemisphaericaexon
TCONS_00012525-exon-sc0000145-1575043694:347481..347587TCONS_00012525-exon-sc0000145-1575043694:347481..347587Clytia hemisphaericaexon
TCONS_00012525-exon-sc0000145-1491911889:357043..357115TCONS_00012525-exon-sc0000145-1491911889:357043..357115Clytia hemisphaericaexon
TCONS_00012525-exon-sc0000145-1510915933:357043..357115TCONS_00012525-exon-sc0000145-1510915933:357043..357115Clytia hemisphaericaexon
TCONS_00012525-exon-sc0000145-1575043694:357043..357115TCONS_00012525-exon-sc0000145-1575043694:357043..357115Clytia hemisphaericaexon
TCONS_00012525-exon-sc0000145-1491911889:357468..357821TCONS_00012525-exon-sc0000145-1491911889:357468..357821Clytia hemisphaericaexon
TCONS_00012525-exon-sc0000145-1510915933:357468..357821TCONS_00012525-exon-sc0000145-1510915933:357468..357821Clytia hemisphaericaexon
TCONS_00012525-exon-sc0000145-1575043694:357468..357821TCONS_00012525-exon-sc0000145-1575043694:357468..357821Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000145supercontigsc0000145:338961..357821 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
30.6342	33.4319	29.7199	26.6745	0.1466	0.71443	0.632514	0.0630949	15.3171	16.6824	13.383	12.2332	7.20675	6.13649	12.3431	14.7706	20.0878	19.1116	3.24786	4.90445	16.675	8.3389	20.5051	14.6279	0.00296467	0.471136	13.7503	12.1237	15.0257	14.9115
Blast
[Close]
BLAST of TCONS_00012525 vs. Swiss-Prot (Human)
Match: SODM (Superoxide dismutase [Mn], mitochondrial OS=Homo sapiens GN=SOD2 PE=1 SV=2)

HSP 1 Score: 301.212 bits (770), Expect = 8.344e-102
Identity = 142/218 (65.14%), Postives = 170/218 (77.98%), Query Frame = 3 
Query:   30 MLSTVARNTRRALSKQALQSVQVASKHTLPALDYEYSSLQPIISEEIMTLHHSKHHQTYVNNLNAAEEQLQDALSQGDLPKVIGLQPALRFNGGGHINHTIFWTNLSPNGGGEPKGDLLAAIVRDFGSFANMKEQLTNATVAVQGSGWGWLGYDKKTSMLTIDAMANQDPLQSTSGRIPLLGIDVWEHAYYLQYKNVRQDYVKAIFDIVNWSNVSERY 683
            MLS     T R L+  AL  +    KH+LP L Y+Y +L+P I+ +IM LHHSKHH  YVNNLN  EE+ Q+AL++GD+   I LQPAL+FNGGGHINH+IFWTNLSPNGGGEPKG+LL AI RDFGSF   KE+LT A+V VQGSGWGWLG++K+   L I A  NQDPLQ T+G IPLLGIDVWEHAYYLQYKNVR DY+KAI++++NW NV+ERY
Sbjct:    1 MLSRAVCGTSRQLAP-ALGYLGSRQKHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLNVTEEKYQEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERGHLQIAACPNQDPLQGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERY 217
The following BLAST results are available for this feature:
BLAST of TCONS_00012525 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SODM8.344e-10265.14Superoxide dismutase [Mn], mitochondrial OS=Homo s... [more]
back to top