TCONS_00012523 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012523
Unique NameTCONS_00012523
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length940

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012523 ID=TCONS_00012523|Name=TCONS_00012523|organism=Clytia hemisphaerica|type=transcript|length=940bp
acagAAACTAAAtaattaaaacataaaaaatgctGTCGACAGTCGCTCGA
AACACGCGTCGTGCACTTTCAAAACAAGCTCTGCAATCAGTACAAGTGGC
ATCAAAACACACTTTGCCAGCTCTAGATTATGAATACTCATCATTGCAAC
CAATCATCTCTGAAGAAATTATGACCCTTCATCATTCTAAACATCATCAA
ACGTACGTTAATAATTTGAACGCCGCGGAAGAACAGCTACAAGATGCTCT
GTCTCAAGGCGACTTACCAAAAGTGATAGGACTTCAACCTGCACTTCGAT
TCAACGGAGGAGGACACATCAATCACACCATCTTCTGGACCAATCTCTCA
CCCAACGGTGGAGGCGAACCCAAAGGTGATTTGTTAGCAGCGATCGTTCG
TGATTTCGGATCATTTGCAAACATGAAAGAACAATTGACGAATGCAACTG
TTGCTGTTCAAGGCTCCGGTTGGGGATGGCTGGGTTATGATAAAAAGACT
TCGATGTTAACAATCGATGCCATGGCAAACCAAGACCCTCTACAATCGAC
CACCGGACGTATCCCGTTGCTTGGTATTGACGTTTGGGAACACGCCTATT
ACCTACAGTATAAGAACGTTCGTCCTGATTACGTCAAAGCCATCTTCGAT
ATTGTCAACTGGTCTAATGTATCTGAACGATACGAGAACGCTATGTGATT
GTAGGAAAGAACTTAAATTACTGTTTTCATTTCCTGGCTGGATTGAATGA
GCAGGTCCAGGGTAATctcttcagaaaattttgaaaatccaggtctggat
caatttttgtaaaaaactaaaTATGATGAatttaactctttttttttaat
ttacgaattaaaatttcttcattagaaATTTTAGAAAGAATACATTTTTA
ACAACTAGATATGTCAAAATATATTTAGGTTACTCTCTCC
Run BLAST on NCBI

protein sequence of TCONS_00012523-protein

>TCONS_00012523-protein ID=TCONS_00012523-protein|Name=TCONS_00012523-protein|organism=Clytia hemisphaerica|type=polypeptide|length=222bp
MLSTVARNTRRALSKQALQSVQVASKHTLPALDYEYSSLQPIISEEIMTL
HHSKHHQTYVNNLNAAEEQLQDALSQGDLPKVIGLQPALRFNGGGHINHT
IFWTNLSPNGGGEPKGDLLAAIVRDFGSFANMKEQLTNATVAVQGSGWGW
LGYDKKTSMLTIDAMANQDPLQSTTGRIPLLGIDVWEHAYYLQYKNVRPD
YVKAIFDIVNWSNVSERYENAM
Run BLAST on NCBI

transcript from alignment at sc0000145:338961..349367+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012523 ID=TCONS_00012523|Name=TCONS_00012523|organism=Clytia hemisphaerica|type=transcript|length=10407bp|location=Sequence derived from alignment at sc0000145:338961..349367+ (Clytia hemisphaerica)
acagAAACTAAAtaattaaaacataaaaaatgctGTCGACAGTCGCTCGA
AACACGCGTCGTGCACTTTCAAAACAAGCTCTGCAATCAGTACAAGTGGC
ATCAAAACACACTTTGCCAGCTCTAGATTATGAATACTCATCATTGCAAC
CAATCATCTCTGAAGAAATTATGACCCTTCATCATTCTAAACATCATCAA
ACGTACGTTAATAATTTGAACGCCGCGGAAGAACAGCTACAAGATGCTCT
GTCTCAAGGTGAGGGATGTCATTTGATTCAACCTACAGATTATAATTTTA
ACTATACACACTCATTTTTATTAGCATAAGGGGAAATCGGATCGAGGCTC
ATTATGCTTAGGGATATGCTTTACAACTTtacaaatgcttttttcaagAC
ATCGTAAATTTTGacagattttcattttccttttactTTTATATGATTTC
GTTGTGATAGAGTATTCTTTGTCTACCTCACTGTCTCATTCTGTCTCATT
GACTCtattttcgaaatttgatgaaaaaatttctcagcCTCGAGCTATGT
TTTGCATTATGCTTTTTTGCAATtattattttgtgattttgagcctaagt
atgtttgaaaatgtttaaaaatgcgTTATTTAGCGCAATTTAGTAAAAGG
AATGAATACGTAGTGTTGGTGTTATTTCTGAGGTCGGGGGTCGTTTTTTt
cgtttgtcgttctttttgccGTTTtcaatagttatttgtcgttcttttta
gatggtctggaaacgttagTTGAACAATCTCTTAAGATTTATTATTAAAA
TTCGATGGCCGACTTCTAAAGATAAACTTAATAAATTGATTTGTGTCACC
ATTTATAGCTTGTTGAGCTAAGATTGGGTTTCCTGACGGTCACTTTATTT
CATAATTAAACCAAGCTAGATAatctaagtaagtaagtttacGAATGAAG
TCAACGGCGACCCAGGGCGACCCGAAGATTTGCTTTTTCTTAGGCTGTCT
ACCTGAATGTGGGAAGGAAATCTACACGCTCTAATTTGAACatatattat
tcgaatctttgaATGATCCGAATTAAAACATTGGTCCTCTCAACTAAAAA
ATAGTGTAAAATAGTAATCTGAACTTTTTCTAGAATTCGAAGAAAGTATT
TATCCCTTTAAGATcggattagagagagtcaactgtatttaaaCCATCAG
TCTTGTACTTGATCTTTCATTGGTTGAGAGACatcttattttttcattca
tatTATTATCATTTTTCTCTCTCACATAACGCGGCTGATAACCGAAGTAT
TGATTGACGCCAAATGAGTTAAGTAAAGCTGAAATTGCAGATGACGTAaa
acgataaactcggtatacattATTTTTTCAGGCGACTTACCAAAAGTGAT
AGGACTTCAACCTGCACTTCGATTCAACGGAGGAGGACACATCAATCACA
CCATCTTCTGGACCAATCTCTCACCCAACGGTGGAGGCGAACCCAAAGGT
ATAGACACTTTTGATACATCATTGTGCTGGTCCAAATTGCTTAGCCCAAG
ATTGGGTTAAACTCTTATACTAACTTTATGCCTATGATTGAAACATGATG
GATTCATATATGGCTTAGCTCTGGCCTGTCTAGAGATGATGCTATTATAA
TCATAGTGTCAGCCCCCCAGAAATCTAAGAAGCACCTAGACCAGGTTAGG
GATTGGGGGCTAATATTTTGCAaatctttggggttacctattcattggGG
TACCTAGCTGTTTTGATCGAAGCTCTGGGGNACATTATTTTTTCAGGCGA
CTTACCAAAAGTGATAGGACTTCAACCTGCACTTCGATTCAACGGAGGAG
GACACATCAATCACACCATCTTCTGGACCAATCTCTCACCCAACGGTGGA
GGCGAACCCAAAGGTATAGACACTTTTGATACATCATTGTGCTGGTCCAA
ATTGCTTAGCCCAAGATCGGGTTAAACTCTTATACTAACTTTAGTCCTAT
GATTTAAACATGATAGATTCATATATGGCTTAGCTCTGGCCTATCTAGAG
ATGATGCTATTATAATCATAGTGTCAGCCCCCCAGATTGCACCTAGACCA
GGTTAGGGATTGGGGGCTAATATTTTGCAaatctttggggttacctattc
aatGGGGTACCTAGCTGTTTTGATGGAAGCTCTGGGGACTGTGTATATTT
tccatattgaatatttcaaaatatttaaaattattgaattttttaccCCA
GCGCCCAGTTTCCCTTCTAATTTAGATTCTTACTTACTTCTTTCCACGtc
atcttttgctatatttttcaaatgtgattgttttgatttacagccgccat
cCTAATAGCATAATAACAAAGTTTTTTTCTCATGCGTGTGCGCTTCCCGC
GCTAGCATAGAGAAGGTAAAACCTTATTATAAGAAagggggtacctaact
caaagcaatttctcaaggggacctaactcgttgggggcgccatgcttcaa
tgggggcacctgaaaagtgggctgaaaccatgataATGCTTATGAGATGA
ACGAGAGAAACTCTGTATAAGACGACTGAAGAAGAATTTCGCTCAATTTA
CGGTATAGGTATATATTTACAAGGTaaataattaagaaaaaaatccatga
tgagaaaaataatttacaaaaattgagaaataggaaaaaatctgcgaaga
aaaaaacaaaattatttataTAAAAGTTATTTACAAAATCCtaggttaat
tttttttgatttttatgaaaatattaaatatacatttgataaagaataaa
taaatgcGACGCTACGGCTGATGAATGAAATCAGAGAAATTGATGACCGA
AATATTTGGTTCTGTATTCCTCTGCTTGTCGCctgaaaacgaaaaaaaag
agggtgattaaaatgttgTACGATGAGTTTGTGTCAAGTGCCAACAACAG
AAGAATGTTTTCActtcaaaacattaaaaattagTTCCAGACAGATCTTT
TTGTTGAAAGGANAAATGTTTTCACTTCAAAACTCATTAAAATTAGTTCC
AGACAGCTCTTTTTGTTGAAAGGATTGTCAATTTACTTGTCTTCATTACT
TGAACACATTCGCGATTGACTTCTTTAACAATCAGATAAGGGGAACACGA
AAGAAATATTCTATTGAAATTTACTTGCTTAcacattttgtttgtttgag
cCATCACGGAGGTTGGAGGCTTCTGCAATGTCGCCTGGACCGTACTCGAA
GTAATTTTGCAAGAGGTTGTAAATCCTGAAAAACGAAGAGAACGGAAGAT
GACTTATATTCATTAGCTTTAGATTCAGAATGTCATCCAAACCTTGATTG
CGCAATTTTTATGAATTCGGTTGGAATTCTATCACTCCTAGAACAAACAT
CGAACTAAATCTTAAACGGTAAAATGCTAACTACTTCGAAACAAATTCGA
CAATCAAATCTTAATTGATGAATTAGATTCGATTTAATTTGATTTGGTCT
GGTGTTCGTTTCCTTTCGATTGCAATCGTGTGATAACGAATCGATTGTAC
GAAGATACTTACTTTGAGTTGGGTTGAGCATAATCGATGACAGTCTTATT
GTCGAGATCTTCGTAAAGAGGGTTCATCTGGTGAGCCATCAATAATTGAA
GAATATCTGCTCATTGATCAATGACTGCAATATGAGCTGTGGTTCTATAA
TAAAAGTCGAAGTTGAAAGAGTTAAAGGATGGGAATTGCATATTGATGCA
TTTGATTCCATTTTATCTTTAAACGAATATGTCATAAGATATGAATTTGA
ATGTGAACAGTGTTATCTTTTTCGCCACTTGGATATGCGATTTCCTCAAA
AGCCCTGGAGAGCTATTAATGTAGGAGATTTTCTTCCAACAAAGCCAAAA
CAAAGCAGATACTCGTAGAACATAATGTTGTTACAATCACTTACCGACCG
TTGCCTTCTCTGGCGTTCACATCAAGTCCTTGGTGCAACATGTAATCGAT
ACACTTCAGAACTACAATGTGTTTATTGTTCATCAAAGCCATATGTAGAA
AGCTCATTTCACCCAATCTGCTTTCACCCTGtggagaaaattgaaatttc
aataagCCTACAATTTCATTTGatcaaaaatagctaaaatcgACGAAATA
GATCCAGTTTTTCATGCAGAAAATAAACAATGTTACTTTGTATTTTATCC
CAAAATGCTTCTTGATGCCAAAAATACAACTTGAAGATGTTATTAAGATG
TCTAGGTTCTAAGGCCTCTTAAAGGGAGAATGTGGTGTGTAAACTTACAT
TTATTCTTGGTGAGACGTCCCACAAAAGTTTGAACATTTCGAAGCGTTCA
TCACCATAGAAATGCAACAAAAGAGTCAAAGCATCACGAGAATCTTGTGC
CTTGATACGTGTGTTAGCGCCTGCTTTGATCAACGCTTTGACGCACTCGA
TGGAACCGATTTCAATTGCCTAAATAGAAGAAATTTATTCAATATGTAGT
AAATATGGTTATTGTACAGCTTATTTTTGTGTTCTTGATGTTAACTGATG
GTGCCAGAATCACCAAAAATAGGTTTAATATTCAATTGAATCTTCATTGA
AAAACACAGCCCAAGCTCTCTGAAAAATATACCAACGTAAAAGAATTTCC
CTGATGGAATTAATCCTTATtcataattttcactaaaacaaaAGCCTGTC
TTAAGAAAATCTTGAAAGCTACCTAACACCGGTGACACCAGTCACTTACT
TTATAGAGTGGAGTTTTGCCATGGTAGTCTTGCTTGTTGACATCGACACC
AGGACATCTCAATAAGATATTTAAAGTTTTAATGCATCGCCAGGAAGCGG
CGAAATGTAGTGCGGTCCTGTTAAAATGAAGATAAATACATTGATAGTCC
CCATGGATGTAAAACCACTTCAAATTAGAGGTTCAAatttctctctgtaa
ttcgaatctttctccaatttaaagaacattttttcatCCCCCGAAGATCG
AATTAGACAGAGAGAAAGTCAATGTATAAACAATTTTCATCATCCTGGGA
CGAACCAGGCGAGGAAATCTTTTGGCTTTGTTTGATGATCATAGCATAAG
GCTACTCTGCTTTGTACTTTTTGTACTTTGTAGCGCTTCTAAGAACTATC
TTTCATATTTTAGTCCATCGTTTTACCTCTTTTGTGCGTCAACTCTGTTG
ATTTtctgttgaaatttttcttccttcAACACTTTGCGTAATTTCTTCAA
TTTACCTTTCCAGGCGAATCTAAAAGTGGAATAGTAAAATGATTGAGAAT
AAATCTTTATTCGTCTTTGTGTTTGAGTTTGCTTCGGTCTGTCTGTACCA
GACCAACACCATATCTATACAGAAATTCTAAGGNTTCGTCTTTGTGTTTG
AATTTGCTTCGGTCTGTCTGTACCAGACCAACACCATATCTATACAGAAA
TTCTAAGGTTTGGCGtaagtattttttcaattttttttacagtgCTCGAT
ACATATGTAGAGGGATGTCAGTAATTCTTAGTTGAAGATTTTCACCTGGC
AGTTGCAGGATAAAAACGTGTCTTTTCTTCCTTACTAAGGTTTGGCGTAG
AATCTTTCTCAAAAGAGACAATATAAACATAAGATtgtcaaagttttttt
catcaacaaagttttttttgtataccatagtaaaaagaaattaaaagaat
gatTTGTCATTCATTAACGAACATACCTCAAAATAGCGGAAAGTTCCTCC
TCTTTTACTGTCCAATTAGGATAACTGCCTTCTTGAATTTTTCGTCGGAC
GCGCAGCTCTTCGACGTAACGTGGTGGTACGCCGTAATCATACGCGTTAT
CGATCAAGAACTTGCAATACGCGTCTGCAGACATACGGTGACCGGCACCT
TCGTCAATCGTCAACGCGTTCGCGACTTCGTGACGAAATTTCTCCATCAA
TTCTTCNTACACCGTAATCATACGCGTTATCGATCAAGAACTTGCAATAC
GCGTCTGCAGACATACGGTGACCGGCACCTTCGTCAATCGTCAACGCGTT
CGCGACTTCGTGACGAAACTTCTCCATCAATTCTTCTGTGTTCTCACGGC
GTTCATCTAACGTCATTGCGGACGCTTCGTAACGTCGATGTTTCGGAACC
GGAACGATTGTCCGGTTTCCAATAAATAAGCCGGTTTGTTTTTCGCGTTC
GGCTTTCTTTTTCTCATGTTGTCGCCTGAGATCAGCGTCAAACCTTTTGC
TCAGGTTATAGAAAGCACTTTTTCGTTCTTTGCCTGTTTTTTGTGGTACG
TAGACCGTGGCTCTCTTGACGGAAGCATTGACTTGCGCTACAGCTTTATT
TACTTTGTCGTTGTATGTTTCTGAATGGACAGAATATTTGATTGGAAGCT
GTGGCAAAACTTCTTTTCGCTCACTCGCTTGATCTGTGAAACCAAAAAGT
AACGCAAAATGTTTAGATTATGACAGTGACCTTATTAGGAGACACTTTAA
ACGTTTCTGATTTAAGTTTAGATTCCactaaatttttctttgaaactaat
AAATTGCAAAAACTTTAGGATATGTTATTTGAACAACACAATGAAAAGGT
CTCCTCACCTTTATTTTGCTTGGCAGATTTGGCAGCTTCTCgtttctttt
tcaagatttcttgaaatttatcCAATGTCTTCTGGTCTTCATCGTCCATC
TCATGAAACAACTTGCAACCGTTGCTCANTCaagatttcttgaaatttat
cCGATGTCTTCTGGTCTTCATCGTCCATCTCTTGAAACAACTTGCAACCG
TTGTTCAATTCTCGATCCTTTACTGGTCCATGTTCATCTGAAAGTCCATG
TTCTCCGAGATAATCGTTAACAATCGCACGGTAATGCTTGACACGTTCAC
CAGACAAAAGTCCTGGGTCCATGATATTTGTAATACGCTCAACTTCAGTC
AAACTTCGGCGAACGGAATCGAACTGCATGAAACGCATCATGGTTTTATC
CAAAGCCTCCTCGCTAATGGTGGAGTCCAATTTCCTCAACTCATCCTTAA
GCTCTGGAGTGCACAGCTCCAAGCATTCTTTAAACACGACTCTGGCTTTC
CATTGAGCTTTAGCCTCAATTTCGACTTCTTTTAGATGTTTCAATTCAAC
ATTGACTTCTGATTGAACCTCGGGTATTCCTGATGACTCAGGGTATTGCA
AGGAAGATGTCTTCATTCGTTTCTCAGATGGAGTTGGTCGTAAGTGCAAT
GATGTGCTTGATGCAACTTTCTTAGGTTCAAGGTCATTCATATATCTAGA
GAACCTCATTTTATGATTTGATGGTACCATTGTTGGTTCTGGTGATATGT
TTAAACATTCAAAGACAGTAGAGTTTGAGTACCTGAATAAATTTGGCTTA
CTATCTGCCATGGCTCCGCTTGTTAGACAGTTCTCATAGAAATTAACGTT
GGGTTTGATGCATTGCATGGATTTCCGTCGACCGCCGTTGAAATTGATGC
GGTTCTCACGCTCTGAAGgaataaaaagaaacatgttCAGGTTTATTTTG
GTCACTTTGCTGTGAAAGAATCTGAACTGATATGATTTCAAAACGTCTGA
GCCGTCTTGTTCTCGACCCAGCGGAACTTCAATTCACGCTATCATGCAAA
TTATTCGACAGCTTAAATGGATTTCATTCgagaaaaatagaagaaatgCT
CCTATTCACTCTTTGAGATTAGGATCATGAAAATAAGAATCTATAAGAAA
AGCAAAGAAATTAAACAACTTACCCATGATTTGTTCAACACGTTTCTCCA
TCTCTTTTATGTGACTTTGCTTCTTGGCGTAATGTTGTTTTTCAGGTGCA
TCTGTCGCTTTTGATTCAAAAGGAAGGATCTCTCTTGAATCGCCTGTTCA
ACGACATCCTGCTCCTCTTGCCAAAGACCCAAGTCTTGGCACGGCaaaac
aaaaacctttaaaGAGTTCCTCATTTTTATGACGAACTGatggtttttat
ttaaaaaaaactaaattctcTGTTTATGCAACAGAGTCTggttgattttt
gattgaattgacttcttttaatccaattaaaatatatttcactATAAATC
CAACTTTAAAAAAgctcttttcaaacttttacgGCTTGGTAGGTTGGGTT
TTCAAACGAAACTGAATTGAATTCATAAAAGTGGCTTTCTTtatattatt
tgacgtcaataagtttttgtgacgtcaatttttgatatgTTATCAAGTTT
CAtcgaatttttgtattttttcttttttttcgcgaaagtcTTTATGATCA
ATACggcgaaaatctgaaaataaatatttcttgaaaatagTTTTGTCGGT
TTCATAAAAGATGTTTCAGGataattttaagataagaatTTTTAGcgatt
tcaataaattttgattgtaATCAATTTTTACAGAAGTTTGTGGAtaacaa
aaaatcgaaaaacagCTTCATTCTGATCTTGAACTCAAAAGTATTTCATT
TATTCTCTTATCTCTTGCAGGTGATTTGTTAGCAGCGATCGTTCGTGATT
TCGGATCATTTGCAAACATGAAAGAACAATTGACGAATGCAACTGTTGCT
GTTCAAGGCTCCGGTTGGGGATGGCTGGTAAGTGGTGGGTAACTAGTTTT
TGCGCGAACAATTCTTCGCTTTTTTCGTTTTGTTATAAAATCACGTAAAT
TTAAACCCGTGAAGCACAATGTACCGCGTATAATATTAATATATcttatt
ggccctttttacgccggcccttatttaACGCGGGCCCCTTTTACGcgggc
cctttttacgccacagtctaattttgggcttaggccaTTTAAggccgtta
ataacgccaaaacttgtaaaaatggctacttatacttcaaattagtaaat
aatgCTTAAAGGTTTTGGTAGTAAATTGTTGAAAATCCCATTCAAAATTA
CTGATTTTCGTGAGGTCTTAGATATGGATAATTTTtatcttcgaatcata
cctaaaatccctTAAATTGAGAAATGATGATAGAAAATTAACGCcacttt
taggtaaaaattgtaaaatctcggcccttattacgccacgtgcccaaaaa
taacgccaataaaggggcggcgtaaaaagggccgataaggtaagtcTTTG
AGAACGAGGTTTGCAATTATTTTATGCATTTCCGAAAATTGCTTTCCTTA
AAAATTGGGGagagggtggaggatataacagttttcagtgatttaccccc
cggacaaagtgacttttggccccccgtacaattttgatgattttcctacc
acctggacaatatatcctccacccccccccccatgtacggaaGAGCCCAT
TTCGTCAGTTTTGTTATTAAAATATTAGTCTGGCCATCTCTTTGTAACAC
TTCTTTCCTCGCCAACTGACAGGGTTATGATAAAAAGACTTCGATGTTAA
CAATCGATGCCATGGCAAACCAAGACCCTCTACAATCGACCACCGGTAAG
GAAAATGCATTAGTATCTTTTACAGACATTCATAAATTTAagtatttgta
aagttttaagcaAAATGAGACTTAATTTTCCAGCTTTATTATACttggct
acgtcatatcttccttcgtttccagcgtaaaactcctactcgggtaaggc
ctaaaagccttgAGCTGTATATTATGTAGACTATATTATCCCTGAAAAtt
actgaaataaaaattatgatagAAAATGATGCATGCTAAAACTACTTTAA
ACAGGCCATCCAAGAAAATCAATGACATTAAATTAACCATTGTTAACCCT
TAGTGTCAAATCGCCACAgcccagatgagatggagtttttataagatact
ttaataattggtcatttgaagtaataaaaatgacgcattCTTTAGGAAAa
gttgttttattactggttaacgaccaaccaaatcaaataagagcttgtaa
aaactccatctcgtccccaaGAGCCAGGCTACCGACCTATGTATTGTCTT
TCATTCCGTTTCTTTATTTCAGGACGTATCCCGTTGCTTGGTATTGACGT
TTGGGAACACGCCTATTACCTACAGTATAAGAACGTTCGTCCTGATTACG
TCAAAGCCATCTTCGATATTGTCAACTGGTCTAATGTATCTGAACGATAC
GAGAACGCTATGTGATTGTAGGAAAGAACTTAAATTACTGTTTTCATTTC
CTGGCTGGATTGAATGAGCAGGTCCAGGGTAATctcttcagaaaattttg
aaaatccaggtctggatcaatttttgtaaaaaactaaaTATGATGAattt
aactctttttttttaatttacgaattaaaatttcttcattagaaATTTTA
GAAAGAATACATTTTTAACAACTAGATATGTCAAAATATATTTAGGTTAC
TCTCTCC

Coding sequence (CDS) from alignment at sc0000145:338961..349367+

>TCONS_00012523 ID=TCONS_00012523|Name=TCONS_00012523|organism=Clytia hemisphaerica|type=CDS|length=4014bp|location=Sequence derived from alignment at sc0000145:338961..349367+ (Clytia hemisphaerica)
atgctGTCGACAGTCGCTCGAAACACGCGTCGTGCACTTTCAAAACAAGC
TCTGCAATCAGTACAAGTGGCATCAAAACACACTTTGCCAGCTCTAGATT
ATGAATACTCATCATTGCAACCAATCATCTCTGAAGAAATTATGACCCTT
CATCATTCTAAACATCATCAAACGTACGTTAATAATTTGAACGCCGCGGA
AGAACAGCTACAAGATGCTCTGTCTCAAGGCGACTTACCAAAAGTGATAG
GACTTCAACCTGCACTTCGATTCAACGGAGGAGGACACATCAATCACACC
ATCTTCTGGACCAATCTCTCACCCAACGGTGGAGGCGAACCCAAAGGTGA
TTTGTTAGCAGCGATCGTTCGTGATTTCGGATCATTTGCAAACATGAAAG
AACAATTGACGAATGCAACTGTTGCTGTTCAAGGCTCCGGTTGGGGATGG
CTGGGTTATGATAAAAAGACTTCGATGTTAACAATCGATGCCATGGCAAA
CCAAGACCCTCTACAATCGACCACCGGACGTATCCCGTTGCTTGGTATTG
ACGTTTGGGAACACGCCTATTACCTACAGTATAAGAACGTTCGTCCTGAT
TACGTCAAAGCCATCTTCGATATTGTCAACTGGTCTAATGTATCTGAACG
ATACGAGAACGCTATGTGAatgctGTCGACAGTCGCTCGAAACACGCGTC
GTGCACTTTCAAAACAAGCTCTGCAATCAGTACAAGTGGCATCAAAACAC
ACTTTGCCAGCTCTAGATTATGAATACTCATCATTGCAACCAATCATCTC
TGAAGAAATTATGACCCTTCATCATTCTAAACATCATCAAACGTACGTTA
ATAATTTGAACGCCGCGGAAGAACAGCTACAAGATGCTCTGTCTCAAGGC
GACTTACCAAAAGTGATAGGACTTCAACCTGCACTTCGATTCAACGGAGG
AGGACACATCAATCACACCATCTTCTGGACCAATCTCTCACCCAACGGTG
GAGGCGAACCCAAAGGTGATTTGTTAGCAGCGATCGTTCGTGATTTCGGA
TCATTTGCAAACATGAAAGAACAATTGACGAATGCAACTGTTGCTGTTCA
AGGCTCCGGTTGGGGATGGCTGGGTTATGATAAAAAGACTTCGATGTTAA
CAATCGATGCCATGGCAAACCAAGACCCTCTACAATCGACCACCGGACGT
ATCCCGTTGCTTGGTATTGACGTTTGGGAACACGCCTATTACCTACAGTA
TAAGAACGTTCGTCCTGATTACGTCAAAGCCATCTTCGATATTGTCAACT
GGTCTAATGTATCTGAACGATACGAGAACGCTATGTGAatgctGTCGACA
GTCGCTCGAAACACGCGTCGTGCACTTTCAAAACAAGCTCTGCAATCAGT
ACAAGTGGCATCAAAACACACTTTGCCAGCTCTAGATTATGAATACTCAT
CATTGCAACCAATCATCTCTGAAGAAATTATGACCCTTCATCATTCTAAA
CATCATCAAACGTACGTTAATAATTTGAACGCCGCGGAAGAACAGCTACA
AGATGCTCTGTCTCAAGGCGACTTACCAAAAGTGATAGGACTTCAACCTG
CACTTCGATTCAACGGAGGAGGACACATCAATCACACCATCTTCTGGACC
AATCTCTCACCCAACGGTGGAGGCGAACCCAAAGGTGATTTGTTAGCAGC
GATCGTTCGTGATTTCGGATCATTTGCAAACATGAAAGAACAATTGACGA
ATGCAACTGTTGCTGTTCAAGGCTCCGGTTGGGGATGGCTGGGTTATGAT
AAAAAGACTTCGATGTTAACAATCGATGCCATGGCAAACCAAGACCCTCT
ACAATCGACCACCGGACGTATCCCGTTGCTTGGTATTGACGTTTGGGAAC
ACGCCTATTACCTACAGTATAAGAACGTTCGTCCTGATTACGTCAAAGCC
ATCTTCGATATTGTCAACTGGTCTAATGTATCTGAACGATACGAGAACGC
TATGTGAatgctGTCGACAGTCGCTCGAAACACGCGTCGTGCACTTTCAA
AACAAGCTCTGCAATCAGTACAAGTGGCATCAAAACACACTTTGCCAGCT
CTAGATTATGAATACTCATCATTGCAACCAATCATCTCTGAAGAAATTAT
GACCCTTCATCATTCTAAACATCATCAAACGTACGTTAATAATTTGAACG
CCGCGGAAGAACAGCTACAAGATGCTCTGTCTCAAGGCGACTTACCAAAA
GTGATAGGACTTCAACCTGCACTTCGATTCAACGGAGGAGGACACATCAA
TCACACCATCTTCTGGACCAATCTCTCACCCAACGGTGGAGGCGAACCCA
AAGGTGATTTGTTAGCAGCGATCGTTCGTGATTTCGGATCATTTGCAAAC
ATGAAAGAACAATTGACGAATGCAACTGTTGCTGTTCAAGGCTCCGGTTG
GGGATGGCTGGGTTATGATAAAAAGACTTCGATGTTAACAATCGATGCCA
TGGCAAACCAAGACCCTCTACAATCGACCACCGGACGTATCCCGTTGCTT
GGTATTGACGTTTGGGAACACGCCTATTACCTACAGTATAAGAACGTTCG
TCCTGATTACGTCAAAGCCATCTTCGATATTGTCAACTGGTCTAATGTAT
CTGAACGATACGAGAACGCTATGTGAatgctGTCGACAGTCGCTCGAAAC
ACGCGTCGTGCACTTTCAAAACAAGCTCTGCAATCAGTACAAGTGGCATC
AAAACACACTTTGCCAGCTCTAGATTATGAATACTCATCATTGCAACCAA
TCATCTCTGAAGAAATTATGACCCTTCATCATTCTAAACATCATCAAACG
TACGTTAATAATTTGAACGCCGCGGAAGAACAGCTACAAGATGCTCTGTC
TCAAGGCGACTTACCAAAAGTGATAGGACTTCAACCTGCACTTCGATTCA
ACGGAGGAGGACACATCAATCACACCATCTTCTGGACCAATCTCTCACCC
AACGGTGGAGGCGAACCCAAAGGTGATTTGTTAGCAGCGATCGTTCGTGA
TTTCGGATCATTTGCAAACATGAAAGAACAATTGACGAATGCAACTGTTG
CTGTTCAAGGCTCCGGTTGGGGATGGCTGGGTTATGATAAAAAGACTTCG
ATGTTAACAATCGATGCCATGGCAAACCAAGACCCTCTACAATCGACCAC
CGGACGTATCCCGTTGCTTGGTATTGACGTTTGGGAACACGCCTATTACC
TACAGTATAAGAACGTTCGTCCTGATTACGTCAAAGCCATCTTCGATATT
GTCAACTGGTCTAATGTATCTGAACGATACGAGAACGCTATGTGAatgct
GTCGACAGTCGCTCGAAACACGCGTCGTGCACTTTCAAAACAAGCTCTGC
AATCAGTACAAGTGGCATCAAAACACACTTTGCCAGCTCTAGATTATGAA
TACTCATCATTGCAACCAATCATCTCTGAAGAAATTATGACCCTTCATCA
TTCTAAACATCATCAAACGTACGTTAATAATTTGAACGCCGCGGAAGAAC
AGCTACAAGATGCTCTGTCTCAAGGCGACTTACCAAAAGTGATAGGACTT
CAACCTGCACTTCGATTCAACGGAGGAGGACACATCAATCACACCATCTT
CTGGACCAATCTCTCACCCAACGGTGGAGGCGAACCCAAAGGTGATTTGT
TAGCAGCGATCGTTCGTGATTTCGGATCATTTGCAAACATGAAAGAACAA
TTGACGAATGCAACTGTTGCTGTTCAAGGCTCCGGTTGGGGATGGCTGGG
TTATGATAAAAAGACTTCGATGTTAACAATCGATGCCATGGCAAACCAAG
ACCCTCTACAATCGACCACCGGACGTATCCCGTTGCTTGGTATTGACGTT
TGGGAACACGCCTATTACCTACAGTATAAGAACGTTCGTCCTGATTACGT
CAAAGCCATCTTCGATATTGTCAACTGGTCTAATGTATCTGAACGATACG
AGAACGCTATGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007033XLOC_007033Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012523-proteinTCONS_00012523-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012523-exon-sc0000145-1491911889:338961..339218TCONS_00012523-exon-sc0000145-1491911889:338961..339218Clytia hemisphaericaexon
TCONS_00012523-exon-sc0000145-1510915933:338961..339218TCONS_00012523-exon-sc0000145-1510915933:338961..339218Clytia hemisphaericaexon
TCONS_00012523-exon-sc0000145-1575043694:338961..339218TCONS_00012523-exon-sc0000145-1575043694:338961..339218Clytia hemisphaericaexon
TCONS_00012523-exon-sc0000145-1491911889:340342..340400TCONS_00012523-exon-sc0000145-1491911889:340342..340400Clytia hemisphaericaexon
TCONS_00012523-exon-sc0000145-1510915933:340342..340400TCONS_00012523-exon-sc0000145-1510915933:340342..340400Clytia hemisphaericaexon
TCONS_00012523-exon-sc0000145-1575043694:340342..340400TCONS_00012523-exon-sc0000145-1575043694:340342..340400Clytia hemisphaericaexon
TCONS_00012523-exon-sc0000145-1491911889:340816..340873TCONS_00012523-exon-sc0000145-1491911889:340816..340873Clytia hemisphaericaexon
TCONS_00012523-exon-sc0000145-1510915933:340816..340873TCONS_00012523-exon-sc0000145-1510915933:340816..340873Clytia hemisphaericaexon
TCONS_00012523-exon-sc0000145-1575043694:340816..340873TCONS_00012523-exon-sc0000145-1575043694:340816..340873Clytia hemisphaericaexon
TCONS_00012523-exon-sc0000145-1491911889:347481..347587TCONS_00012523-exon-sc0000145-1491911889:347481..347587Clytia hemisphaericaexon
TCONS_00012523-exon-sc0000145-1510915933:347481..347587TCONS_00012523-exon-sc0000145-1510915933:347481..347587Clytia hemisphaericaexon
TCONS_00012523-exon-sc0000145-1575043694:347481..347587TCONS_00012523-exon-sc0000145-1575043694:347481..347587Clytia hemisphaericaexon
TCONS_00012523-exon-sc0000145-1491911889:348383..348455TCONS_00012523-exon-sc0000145-1491911889:348383..348455Clytia hemisphaericaexon
TCONS_00012523-exon-sc0000145-1510915933:348383..348455TCONS_00012523-exon-sc0000145-1510915933:348383..348455Clytia hemisphaericaexon
TCONS_00012523-exon-sc0000145-1575043694:348383..348455TCONS_00012523-exon-sc0000145-1575043694:348383..348455Clytia hemisphaericaexon
TCONS_00012523-exon-sc0000145-1491911889:348983..349367TCONS_00012523-exon-sc0000145-1491911889:348983..349367Clytia hemisphaericaexon
TCONS_00012523-exon-sc0000145-1510915933:348983..349367TCONS_00012523-exon-sc0000145-1510915933:348983..349367Clytia hemisphaericaexon
TCONS_00012523-exon-sc0000145-1575043694:348983..349367TCONS_00012523-exon-sc0000145-1575043694:348983..349367Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000145supercontigsc0000145:338961..349367 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
65.5801	65.4719	62.7087	57.8938	0.458729	2.243	2.58471	0.245151	49.184	48.2578	45.469	41.903	22.0029	26.5536	23.6688	31.3122	42.8434	39.8087	7.12482	8.38215	31.0727	19.2514	37.1923	27.0416	0.0146814	2.35688	25.2384	23.9762	29.7227	24.7372
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001189Mn/Fe_SOD
IPR019831Mn/Fe_SOD_N
IPR019832Mn/Fe_SOD_C
IPR019833Mn/Fe_SOD_BS
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO:0004784superoxide dismutase activity
Vocabulary: Biological Process
TermDefinition
GO:0006801superoxide metabolic process
GO:0055114oxidation-reduction process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0006801 superoxide metabolic process
molecular_function GO:0046872 metal ion binding
molecular_function GO:0004784 superoxide dismutase activity
Blast
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BLAST of TCONS_00012523 vs. Swiss-Prot (Human)
Match: SODM (Superoxide dismutase [Mn], mitochondrial OS=Homo sapiens GN=SOD2 PE=1 SV=2)

HSP 1 Score: 305.834 bits (782), Expect = 2.043e-103
Identity = 144/218 (66.06%), Postives = 171/218 (78.44%), Query Frame = 3 
Query:   30 MLSTVARNTRRALSKQALQSVQVASKHTLPALDYEYSSLQPIISEEIMTLHHSKHHQTYVNNLNAAEEQLQDALSQGDLPKVIGLQPALRFNGGGHINHTIFWTNLSPNGGGEPKGDLLAAIVRDFGSFANMKEQLTNATVAVQGSGWGWLGYDKKTSMLTIDAMANQDPLQSTTGRIPLLGIDVWEHAYYLQYKNVRPDYVKAIFDIVNWSNVSERY 683
            MLS     T R L+  AL  +    KH+LP L Y+Y +L+P I+ +IM LHHSKHH  YVNNLN  EE+ Q+AL++GD+   I LQPAL+FNGGGHINH+IFWTNLSPNGGGEPKG+LL AI RDFGSF   KE+LT A+V VQGSGWGWLG++K+   L I A  NQDPLQ TTG IPLLGIDVWEHAYYLQYKNVRPDY+KAI++++NW NV+ERY
Sbjct:    1 MLSRAVCGTSRQLAP-ALGYLGSRQKHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLNVTEEKYQEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERGHLQIAACPNQDPLQGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERY 217
The following BLAST results are available for this feature:
BLAST of TCONS_00012523 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SODM2.043e-10366.06Superoxide dismutase [Mn], mitochondrial OS=Homo s... [more]
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