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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012513 ID=TCONS_00012513|Name=TCONS_00012513|organism=Clytia hemisphaerica|type=transcript|length=1553bp
TGGACTGTCGTCTTACTTACCTGAGTTTTACTGAATAACTTTAAATGTTC
TTGAAATAATGCCTTTGGAAAGAATTCATTGTCATGATCTAGCAGTGTCT
TCACAGAGTCTAAAGCTGTGACCGGTCTCCCCTCTGTTAAATTCAGATGA
AGTCcaagttttagttttttgacTGCTGTCTTCAAACAACATTTCAAAGG
AATGGGATCAACGAATGCTGCATTAACTAAAACGGAAACACTGTTAACAA
TTCCATTATTCAAAGCTTCTAAGATTCCTTCGTTTCGTTGGGGACAATAA
CCGTAATCATCAGCAGTAACCTTGATGGTAATAAGTGTTCCAAGTTGGAA
TTGTTTtggttcaaaattttcttccactGCTAGCGCCatctttgttattg
tttttttggCGCGAGAATTATGTATTGCTCCACAATTTAGTAGAGCCTGT
GGTCTAGATGTAAACAATCCCGCGTCCAgcctttttgttttgatctcgAT
TTATCTGGTGACTTTTTAGCAAGAAGTCTCGAtcattcaaattcttttta
aacTTCCAAGATGTCGAAGAGAGGTGAGATGAATATACCTTTTTTGCCAC
TACAAAATCATACCCTATCTATTTGATCGATGGAtgtattttcatgaaat
ttacaAAGAGTTACAAATGCATTTCTCCTGTTAAAGATGAAGTGTTTAAT
TCGTGAATATGTACGTTCTTCATTCAGACAACTTACTTTAATCAAGGCTC
TACCTTATAATGCTTCAAATTGTAATCAACGAAATGTTTTTGTCACATAG
CTGGAGGAAGAGTCGGAGGAAAATTCCGCATGGCACTTGGCTTGCCCGTT
GGGGCTGTCATGAACTGTGCTGACAACACTGGTGCCAAAAACTTGTTCGT
TATTGCTGTAAATGGTACCCAAGCTAGATTGAACAGATTGCCTGCCGCTG
CCTCAGGAGATCTTTTTGTTGCTTCAGTCAAGAAGGGTAAACCAGAACTT
CGAAAGAAAGTTATGCCAGGCGTAGTTATCCGACAAAGAAAAGCTTTCCG
AAGGAAGAATGGCGTCTTCATCTACTTTGAAGATAATGCTGGAGTCATTG
TTAACAACAAAGGAGAGATGAAAGgctcTGCTATCAACGGCCCAGTTGCA
AAGGAATGTGCGGAACTGTGGCCCAGGATCGCCTCCAATGCTGGAAGTAT
TCAttaattggaaaaaaatctttaaaagaataTTCATTTGTTTCCAGTAT
TTACTTCCCTGTTGAGATCATTGTATAATTAAAGGTCATTGAAACTTGAT
TATTTGACTATTTTAGTGTTTTGGCCGTATTTAactatggaggtataaag
aaacaggagatgtATGCTGTTGTAACCAGGCTTGCCCTTCGATTGAAAAA
GTTatgatgtatgcatgctcataaacTTATAtgtcgtgcatttttaatga
gcttttttatccataggtgaaatcttattggctcattgaaGCTTTGAAAA
TTAGTTGAgtcgagattcattgtttctgacgtcagtataagaaaatattt
gga Run BLAST on NCBI transcript from alignment at sc0000145:312698..318913+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012513 ID=TCONS_00012513|Name=TCONS_00012513|organism=Clytia hemisphaerica|type=transcript|length=6216bp|location=Sequence derived from alignment at sc0000145:312698..318913+ (Clytia hemisphaerica)
TGGACTGTCGTCTTACTTACCTGAGTTTTACTGAATAACTTTAAATGTTC
TTGAAATAATGCCTTTGGAAAGAATTCATTGTCATGATCTAGCAGTGTCT
TCACAGAGTCTAAAGCTGTGACCGGTCTCCCCTCTGTTAAATTCAGATGA
AGTCcaagttttagttttttgacTGCTGTCTTCAAACAACATTTCAAAGG
AATGGGATCAACGAATGCTGCATTAACTAAAACGGAAACACTGTTAACAA
TTCCATTATTCAAAGCTTCTAAGATTCCTTCGTTTCGTTGGGGACAATAA
CCGTAATCATCAGCAGTAACCTTGATGGTAATAAGTGTTCCAAGTTGGAA
TTGTTTtggttcaaaattttcttccactGCTAGCGCCatctttgttattg
tttttttggCGCGAGAATTATGTATTGCTCCACAATTTAGTAGAGCCTGT
GGTCTAGATGTAAACAATCCCGCGTCCAgcctttttgttttgatctcgAT
TTATCTGGTGACTTTTTAGCAAGAAGTCTCGAtcattcaaattcttttta
aacTTCCAAGATGTCGAAGAGAGGTGAGATGAATATACCTTTTTTGCCAC
TACAAAATCATACCCTATCTATTTGATCGATGGAtgtattttcatgaaat
ttacaAAGAGTTACAAATGCATTTCTCCTGTTAAAGATGAAGTGTTTAAT
TCGTGAATATGTACGTTCTTCATTCAGACAACTTACTTTAATCAAGGCTC
TACCTTATAATGCTTCAAATTGTAATCAACGAAATGTTTTTGTCACATAG
CTGGAGGAAGAGTCGGAGGAAAATTCCGCATGGCACTTGGCTTGCCCGTT
GGGGCTGTCATGAACTGTGCTGACAACACTGGTGCCAAAAACTTGTTCGT
TATTGCTGTAAATGGTACCCAAGCTAGATTGAACAGATTGCCTGCCGCTG
CCTCAGGAGATCTTTTTGTTGCTTCAGTCAAGAAGGGTAAACCAGAACTT
CGAAAGAAAGGTAATatcatctatatattaatagccgtagtctgtatgtg
tgtttgtttgttttttgtgtgtcactttcgttttctcaagcaatgttttg
ttcttttaaaagatgacttttgcctcttgctccacaaatgtgttaaatca
gattcgcgccgttttataatagatagattagactttttctttttttttct
ttcttttcttttgttttatgttttctaatgtaattaacgaccttatttga
tttgagacgttcgaattcttttcaaaacaaaagaaaatcttttaaacagg
atcttttaaagaaaataacaaatataaaataaaacataagaatcacaaga
caagtttgttagagcaacagcaacattaaaaatacattcaaaaggcggta
aaaactagaattctttcttcgtaaaaagggacctttaaacatgtaagtcg
ataattattttgctgtaaagttaagtcattgttgaatttgaaaaattatt
gaagttatgaccaagttattttataaaaagcaacattaaaattgcgctat
cacgcttttttgtctgcgtgtcctagctgcattccggggggactatggtt
gcgagctgactttcggccctatccctcggacccttagcagaataaagagg
agaagaaacaagggaaattgtgtgaattttaattcactttttggaactaa
tttgacctaatttctatctttctgtgggcaaaaacttgaaattttcctat
ttttccgattcttagtggtactgaagtttgattttgcgatttttcaaact
gccatgtttcaaaaaaggcaccctttaGGGCGGctcatacccataccctt
ctcttgcctaagtaccccccggcTGCCTTTTTTCAacgaatcgcgtgtca
tgtctattattccACTcctcttatcttgacatcaaagttttcctaaacat
caagaactatgGTAAATATACgtgagcgaagcgagaaaaaaaatctaatt
gcagagccgactcggacgtcgctggtcgccggtatggtgtaatttgggaa
tgacgccttTTTCTGCTTTGATCATTTTTGCcgcaaaaatcatttttcaa
aatatggttaaaagatacgtcacccgggagggatagggTGAAACTTTGAA
GGGAATTcttctctttaattttgatCTCATTGTGTTTTAATaaaagccac
cttcccaacatccaaaggactttaaatgtgttcagcaaacagctaaaccg
acGCCGGGTACCAGCTAGTTTGAATAAATTAGAGATGTGTCAGTGTCTGT
TTTTGCCTAAATGAGTGATTGGGATTTCCAGCTTCCAACTTATGATACCG
ACCTTTTTTGGGATAATATGATGACTTAGATAGGGGTCACCTACAAATCA
ATTTTGGGTTTGAAAAACATCAATTGACGATAGTAGGTGGAAGGTTGTTg
acgttttttttcaaatccagAAACAATGATTTTTCATTCCATGCGAAATA
TTACTTCTTGCCATGTTTCTGTTTGGTCGCTTCGTCTGTTTTGAAAACAG
TTccttttgttacatttttacatGAATATTATTAGGAAAAAATTGTTAGA
AAACAGGCCTAGTGTGAATccaacaatgacgtcattaaagTTATATCAga
attaaaaattcaatttctcaaaatttactTATCAAAActacttcaaattt
tcactgaaaaattattttgcgtATGTTTTAAACAGAAATTCAATTTATAT
GACGTAATTGATATGGCATCTAAAACCATATTTTTTGGGTGatacagggc
tgcaaataaatattttcagtcaatcggacatcatgtcgGGACTGAGATGA
AATTCTGTCGGACAAACTctaaatcctgtcggtcattcagtCTATAAGTT
TTCTAAAATCATACAGTCTTGAAAGTTATGGAAAAAGAGAGTAGGTAAAA
GTGACCTTGGAACACCttaagttacgaagaaagcgatgcGATAAAAGTGA
ACTTAGAAagacccttgaaagttacaacGATaacgagttgataaaagtga
gcTTAGagacactcttaaaagttatgaagaaagcaagtcgataaaaAGTG
AACTTAGAAACACGCTTGAAAGTTTCCGCAGAAAGCAAGTGGGTAAAAAG
TGAACTTAGAAACATCCGTTAATAAAAACGCATGAAATCAAAGTAAactt
tagaaacactcttgaaagctaaaagaaagtaAAAGAGTAGTAATAGACAa
agagacagggatgtgaaagATTTGTTTTCAACTCAAATTAATNTAGTAAT
AGACAAAGATACAGGGGTGTGAAAGATTTGTTTTCAACtcaaattaaagt
ctgtccaaatataattggcagtggaaacaagaatgtctgtaacttttgat
agtcaaatataattatggaaattgtttttgcttgttttagaaaatcaaaa
gcgctatatttgaatgtatttttggttgaaaaattcgcgatttttagcgg
ttaaatttgcgattgcaaattgaaataccccttggtagcacttttctgtg
aaatatcaaatctccaacttattactaaagaacgggggtagtgatatgat
tgatataacagtttttcgatcataacacattttacgatctttttaatgac
ctcatagccaaactgtgtttagtgttttgggaattagcaaagttctttaa
tgacttaaaaataacaaaggcaatataagtttatgcttatcttttcaata
aaaactattatactgtgatttcacttcgtttcgaaataatcaatgatacc
aataataccaatgcaccgaaacattttccaacttttaattgcactgttca
agaaagataacataacccccgtttttagtaataagttggagatttgatat
ttcacagaaaagtgctaccaaggggtatttcgggtcccatatcttccgaa
ggacttttctgttggtcttgaaatttaacaaacttcttaatctaaggttg
aactaccactggtgtaaaaatgaaagttatagtataagtagaaaaaaaac
tcaatttttgcaatcgcaaatttaaccgctaaaaagcGCGAATTTTCAAC
GAGAacgtgaaaacatcaaaacttaATCAAAGCTCTGAGTAAACCCCAAT
TTCTCATTGTCTCTTCTCGTGCCCGACAGCAAATCACTCATTTGGCCTTG
TCAGACAAGTGAGATTTCTAACATAAAAATCAACatcaagaaaaaaagac
aattttgaaaattatttttcagaatctttaaactttttatcatttttagc
tttttttcttgtgctAGATGTGTAAGTTTCAAgtattaaatttttgaaat
cctgattttaaatttgttcaATTAATAATATTGATCATTACAGTATTTTT
AGTttgcattgaaaaagaaaagcttcGATATTTTCTCCagaatttttcgt
ttttcgttactttaaaaaaatgatggaCGTTGTCGTTGTGAAAAATAATT
ACGGAATCAAAAATGAGCCACAACAGCaacttctctattttttcaCACCT
ATATGTTATTTCACAAGTTTTGCTGTTGTCATTGCCGTTCTCGTTGTGAC
TGGGGAAAGTCTCTATTGACCGATGaccgacgcttatttgcagccctggt
GATATGATTTTGTTCTTTGTCGAAAAACCATGTTTTTGGTTGATAAGATT
TGGTTCATTGtcgaataatgaattaataaaGTCAACATTGCTTGCTGTTA
GCCAGTACAGACAAGATGATTTCTCTTGTATATAAATGCTGTAGTAATAA
TTAATGCGTTAATAATTCTACTATTTACTCTTTTTAGTTATGCCAGGCGT
AGTTATCCGACAAAGAAAAGCTTTCCGAAGGAAGAATGGCGTCTTCATCT
ACTTTGAAGGTAATATTATGCTGagttttactttcattttcagttttgtA
ATATGCAATGTTTCTAAAATTATCGATCTTGGAACTGGTAGGAGGTGATA
GTTTANactttaatttttttattagaaatcaagaaaaggacaataaattt
ttttcccgGCCGGCCACCCTCATGGACCGGAAACAGAAAAAATTTTAGGG
TCAGCCTAAAGTATTTGCTTATGTCTGTGAAATTCAGCAATTGTTTTGTC
ATCTGAAAGCATGGAAACAAGTACTCccatcaaaaaaggaaaaaactaaG
GTGAATTGGTGGGATTTAACCAAACTATCATTTTCTATTATAGATAATGC
TGGAGTCATTGTTAACAACAAAGGAGAGATGAAAGGTAGGCTTTTAAATT
TAACATTCCTCTCTAGCAAAAAAATCTAAGAGGATGTTTTGCTGacctca
atttgaaattttacttaTCAGACAAGTTTTTCTGTATTTTCtgaatgaaa
tatttttgaaaattatttcatagTGGTAACATGCTCTtagattaaatatt
ttttgatatatGAAAATTCCTTAATAATCTGGAAATTATTTCACTAAAAC
TTGGCTTGGTGTGAATTATAAGCATggttcataagcatataataagcgta
agctatgcctggatgctatGAGAACTTAAGcttacacttgcttataaaaa
aaacatgtatttgcCTCAAAgatttatcattattttttctgaatttttgc
tcagaattaCATACTAACAATGCTCAAAATATGACAGCCCAATTTTTTCG
TCTATTTTAACAGTCTATTTGCAGAAGTTGAACTTGTCTCTGGGATTAAT
ATGGTCTTTTTGTAACcaaacttatttttatttttaggctcTGCTATCAA
CGGCCCAGTTGCAAAGGAATGTGCGGAACTGTGGCCCAGGATCGCCTCCA
ATGCTGGAAGTATTCAttaattggaaaaaaatctttaaaagaataTTCAT
TTGTTTCCAGTATTTACTTCCCTGTTGAGATCATTGTATAATTAAAGGTC
ATTGAAACTTGATTATTTGACTATTTTAGTGTTTTGGCCGTATTTAacta
tggaggtataaagaaacaggagatgtATGCTGTTGTAACCAGGCTTGCCC
TTCGATTGAAAAAGTTatgatgtatgcatgctcataaacTTATAtgtcgt
gcatttttaatgagcttttttatccataggtgaaatcttattggctcatt
gaaGCTTTGAAAATTAGTTGAgtcgagattcattgtttctgacgtcagta
taagaaaatatttgga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012513-exon-sc0000145-1491911889:312698..313707 | TCONS_00012513-exon-sc0000145-1491911889:312698..313707 | Clytia hemisphaerica | exon |
| TCONS_00012513-exon-sc0000145-1510915933:312698..313707 | TCONS_00012513-exon-sc0000145-1510915933:312698..313707 | Clytia hemisphaerica | exon |
| TCONS_00012513-exon-sc0000145-1575043694:312698..313707 | TCONS_00012513-exon-sc0000145-1575043694:312698..313707 | Clytia hemisphaerica | exon |
| TCONS_00012513-exon-sc0000145-1491911889:317535..317606 | TCONS_00012513-exon-sc0000145-1491911889:317535..317606 | Clytia hemisphaerica | exon |
| TCONS_00012513-exon-sc0000145-1510915933:317535..317606 | TCONS_00012513-exon-sc0000145-1510915933:317535..317606 | Clytia hemisphaerica | exon |
| TCONS_00012513-exon-sc0000145-1575043694:317535..317606 | TCONS_00012513-exon-sc0000145-1575043694:317535..317606 | Clytia hemisphaerica | exon |
| TCONS_00012513-exon-sc0000145-1491911889:317941..317982 | TCONS_00012513-exon-sc0000145-1491911889:317941..317982 | Clytia hemisphaerica | exon |
| TCONS_00012513-exon-sc0000145-1510915933:317941..317982 | TCONS_00012513-exon-sc0000145-1510915933:317941..317982 | Clytia hemisphaerica | exon |
| TCONS_00012513-exon-sc0000145-1575043694:317941..317982 | TCONS_00012513-exon-sc0000145-1575043694:317941..317982 | Clytia hemisphaerica | exon |
| TCONS_00012513-exon-sc0000145-1491911889:318485..318913 | TCONS_00012513-exon-sc0000145-1491911889:318485..318913 | Clytia hemisphaerica | exon |
| TCONS_00012513-exon-sc0000145-1510915933:318485..318913 | TCONS_00012513-exon-sc0000145-1510915933:318485..318913 | Clytia hemisphaerica | exon |
| TCONS_00012513-exon-sc0000145-1575043694:318485..318913 | TCONS_00012513-exon-sc0000145-1575043694:318485..318913 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000145 | supercontig | sc0000145:312698..318913 + |
Blast
BLAST of TCONS_00012513 vs. Swiss-Prot (Human)
Match: RL23 (60S ribosomal protein L23 OS=Homo sapiens GN=RPL23 PE=1 SV=1) HSP 1 Score: 223.016 bits (567), Expect = 9.000e-70 Identity = 106/133 (79.70%), Postives = 121/133 (90.98%), Query Frame = 2
Query: 803 GGRVGGKFRMALGLPVGAVMNCADNTGAKNLFVIAVNGTQARLNRLPAAASGDLFVASVKKGKPELRKKVMPGVVIRQRKAFRRKNGVFIYFEDNAGVIVNNKGEMKGSAINGPVAKECAELWPRIASNAGSI 1201
GG G KFR++LGLPVGAV+NCADNTGAKNL++I+V G + RLNRLPAA GD+ +A+VKKGKPELRKKV P VVIRQRK++RRK+GVF+YFEDNAGVIVNNKGEMKGSAI GPVAKECA+LWPRIASNAGSI
Sbjct: 7 GGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSI 139
The following BLAST results are available for this feature:
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