TCONS_00012509 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012509
Unique NameTCONS_00012509
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2227

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012509 ID=TCONS_00012509|Name=TCONS_00012509|organism=Clytia hemisphaerica|type=transcript|length=2227bp
ACTGCTTAGATATATCATTTTGTCTCGCACAGTAtcttaatttcttttta
ttgtgATTTTTAGTGAGAAAATTGCAGAATATAGTTGCAAAACATACCTT
TTCaccaaaaaattgcattctAATTCCTAATAATTTCAGAAGTaccacca
aaaagaaaaaatataagtaAAAACTGACATTACCTCCTTTTTTGACAGCA
TTTGTGGTAATAGCTGCAACATCAGAACCAGCACCAACCTCACTCACACC
CAAACATCCAATAAAATCTCCTGCAATGCTTGGtgccaaaaatgtttttc
tcaatTCATCACTCCCAAAATTTGTTAGAGCTGGAGTACACATATCACAT
TGCACACCAATTGCCATGGGGATTCCACCACAATCAATCATACCAAATTC
TTCGTGCAGCGCCATAGCATAAGAAAAGTCAAGCCCCATTCCACCATATT
CAACTGGTTTATTGACTCCTAAATAGCCAGCATTgccaagttttttgaaa
agttcatgTCCAGGGAAAGATCCTTGCTCCTCCCACTCTTCAACATAAGG
ATTGATTTCTTTATCAATGAATTTCCGAATGTTTCTTCGCAACTCAACAT
GATCTTCTGTGAAGACTGATTCATCAGCTAGACTATCTTGAACTTCATAG
TTAGATTCAAAAAGTCTTGATCTTTGTAGAGTATTAGACGAAGAAGTCAA
GTTTCTCTTGGATAGGATATTAAAAGTTCTTGGAAGGTACCTGGAAGTCT
TGAAAATACCAGCCATTTTTGCTTTGATTATGTAAGGTTCTGTCAGGAGT
GACCTTTGGACCAAAACAGAGCCAGTCTAGCTCTGCAACTTCTCATTTTT
TCCGAGAGTGTAAACCTTTTAGGTTAGTTAGGGGTAAACAAAAGccgatt
caaaatggtagcaaaaaaataatcatatgACGCTTTTTTCAAAACAGGAC
AAATGATCGACTTTGAAGTGACTGTCATGTGATTTTCTTATCAACTGATA
TTTGAAACCAATTTTGTTACGAAATAAAAATTGTACACTAAAAGAACACT
TGACATAGTTAGGAAACTCATTCCACTTTCTACAAGGCAGGCAGGAGGAA
AGACTCACAATTACTGCAAAATGATGAAAGGTTTAATCTTATTGGGTTTG
TTGGGGCTTTCCCTTGCCCATCTTGAGGTGATCGAAGATAAATCATGGCA
TTTATGGAAAGGAGTTCACAACAAATATTACCCCAACATGTTTGTTGAGA
AGATCAGATATAATATTTGGCAAGACAACAGCAATCGTATTGAAAACTTC
AACAAGTTGAACCAAGGATATTCTCTCCGTATGAATCATTTTGGTGATTT
GACCAACACTGAATACCGTCAACACATGAATGGTTACAAAATGAGATCCA
CAAAACATAGTGAAGCTGCTACCTTTCTTTCACCAACCAATGTCAAAGTA
CCAGACACTGTTGACTGGAGACAACAAGGATTCGTCACACCTGTCAAGAA
CCAAGGACAATGTGGATCATGCTGGGCTTTCTCCACCACTGGTTCATTGG
AAGGACAACATTTCAAGAAAACTGGAAAATTGGTCAGTCTCAGTGAACAA
AACTTGGTTGATTGTTCAAGCAAAGAAGGAAACATGGGATGTAATGGTGG
TTTGATGGATCAAGCTTTCGCCTACATCAAAACTAATGGTGGTATTGATA
CTGAAGAAAGCTACCCATACAAAGGAGCTGACGGACAATGTAAATTCGAC
GCAAAGAACATTGGAGCAAAcgacactggattcgttgacgTCAAGAGTGG
TGATGAAGATGCTTTGAAAACTGCTGTCGCCACAGTTGGACCAATCTCTG
TTGCCATTGATGCATCTCACTTCTCGTTCCAATTCTACCACTCTGGTGTC
TACAACTCATGGCTGTGCAGCTCTACACGTCTTGATCACGGTGTCTTAGC
TATCGGATACGGTACTTACCAAGGAAAGGACTACTGGCTCGTCAAGAACA
GCTGGGGAACAGGATGGGGATTAAAAGGTTACATCATGATGAGCcgaaac
aagaaaaatcaatgtGGTATCGCTACTCAAGCTTCATACCCACTCGTTTG
AAACTAAAGACAACATGCTAGAGGATTTGTAGATGATTTTTTTGTAGTGC
ATTTTTTTTACATAGGGTTATCTTTAGTTGAAACTGATGCTTAGTTTTAA
GGTAATTACAATCTTTCTCTTTTTGCA
Run BLAST on NCBI

transcript from alignment at sc0000145:276644..291598+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012509 ID=TCONS_00012509|Name=TCONS_00012509|organism=Clytia hemisphaerica|type=transcript|length=14955bp|location=Sequence derived from alignment at sc0000145:276644..291598+ (Clytia hemisphaerica)
ACTGCTTAGATATATCATTTTGTCTCGCACAGTAtcttaatttcttttta
ttgtgATTTTTAGTGAGAAAATTGCAGAATATAGTTGCAAAACATACCTT
TTCaccaaaaaattgcattctAATTCCTAATAATTTCAGAAGTaccacca
aaaagaaaaaatataagtaAAAACTGACATTACCTCCTTTTTTGACAGCA
TTTGTGGTAATAGCTGCAACATCAGAACCAGCACCAACCTCACTCACACC
CAAACATCCAATAAAATCTCCTGCAATGCTTGGtgccaaaaatgtttttc
tcaatTCATCACTCCCAAAATTTGTTAGAGCTGGAGTACACATATCACAT
TGCACACCAATTGCCATGGGGATTCCACCACAATCAATCATACCTTTtag
taaaaaatttaaataaattttaattatCTGTCTGATCTTTTAGTTTGGTT
TTACAACTTTGCACACAAAGAAAATGGGGCTTGGAGTTTCTTGGCCAATA
AATCTGTCTCTAATTCTTTTCCGATATACTGTTGGCAAGAGAGCCAGATC
CCCGGGGGatcaaaaatggatgatgggtatgtgcggacggtaagggtcgg
tttttttcacctttcaaagtctctctaagggtcggaaaattcaggatttt
tagcaAATTTTTTGATTTCCAGAGAAAGAATTGTAATATTAAGTCTCTCT
AAGGGTATGACTTTTTTCAAAAATCGAAAAAAAAATTCAAAAAGTTTCTC
TAAGGGTCACCTTTTCAGCAAAAATCAGTCTCTCTAAGGGTTGGTTTTCG
GAGGTCCCGTCCGCACATACCCCTAATTCGCCAACCCTAGTACCCCCCCC
CCGAGCCAGATACAACTACAGTCCCCTGTCCATAACATTATAAGGTGTCA
CAATTATAAACTTTTTGTTGAAAAAATGTTTATCTTCTGATCTCTAAAAA
ATTCTTTCTGATAAAGAGAATTCCCAAAAGTTATAACGAGTAAAATAATT
GCTTTCTCAagatttctaaattttaatcaaaatacgAGCACAAAAATCTG
TGCAAGGTCTCTCCTGGCAGGCCAATCTGTTGCCatcataccgtaagttg
gtctaatgtcgacaacCCTCATAAAATTCGGTCACCCTTCTTTACAGCTG
GCGATAATAGAAAAGTTGGGATCACTGTTTGCTAATTAATGGTCAGAGGg
aaatataacttttttcaatcagtgatttaGACCTACCTTTTAATCCCATC
TATAAGAAAGGTGTCAGAATTGAATTAGGTGAGGTATGTCAACATTACAC
CAATGTGATTAATTAATAGAATAGAATCCATAACCAGCCGCTAATTTTAA
AAaccataaaacaaaagaaagtccgAAAAGATTCATTCTGAcatcaaaaa
tcttgaagtaACAGACAAAGTGATCTCAAGTAAAATATGCTATATTTCGT
ATTCTATCTAATACATCATTCAGGCAAAAAGTCAGTCTTTTTGCCTGAAT
GATGTATTATttacttttgatacttttgatgggttttttgagtctctcaa
tcatccaatttggaaATCCGATGATTCACCATTTCTCTTACACTGTTTGA
ACCCGCTCTCCTGTAGGGATAATAATTCGGGAGCAGTGGTTCGTCCGGCA
GTgtggaaagaaaaaggtcaagttGTCAAAGATAGAATTAGAATTAGATA
GAAGCATATTTTAGCATATTTTACTTGAGATCACTTCGTCtgttatttca
agatttttggtgtcagaatgaatctttttggactttcttttgttttatgg
tTAATAGAATAGAATTATAtgacaaaaatcagaaagatgAATTCAGCCAA
CAGGTTTTTGTCACAAGGTTTCTGGGCTAGGAGTTTCTAAGTTGTTTCTC
TAAGTTATTTGGAGTGAAACATCCAATTTATGTCATTTTACTGAACTATT
TATGagccttcatttttttttaaaatgaaatttggcataGTTTAAGACAG
GTTTTTgtgcttttatttttttcaagttattcaTGAAGATCTgtttaata
ttgaaataaaagatTATAATAAAAATCATTTGCGCTGTTTTAAGATGTCA
CCTGTAGTAGAATTTTGATTAAAGAATATTGCTTGCTTCTAAATAAAACT
GAAAAGattatgaaaaaaactgaaaaaatgaaaacagaaAAAGGCCTAAA
ACCAAgttatgaaatatataaaaaaggcTATAAAACTTAAGTCAAAATAT
GTGAAACAACAAATTACAGGCGTGAAAAACCTTTAGCATTGATAGATTCA
ATAACGTCAAATTATGACACTTCACAAACCAAATATTGCCAAACTCAAGA
ATGAAGTTAATTTAAATTATTGGAATTCCAAAACCCTAAGTATAAAAAAA
ACTAACGCATGCAGTAGTTCAATTATGgtaacaaaaaattcaagattttc
caGTGGAATTTTATATGGTAAAATAAAGGTCACTAATAACTAAAAaacac
gtgcgtttggtttgggaacgcgaaacacgaacgcaaactacccatgtcta
aacttttcaatatatctccagaactaacagattttttgaaattctgtaaa
aaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNACCCATTcattgttaatacattttttatttgaaagtaatctctt
catggaataaaaagatatagtcaaatcttgtagggtcatttttcaaaaaa
ttttttgccaaattcgattttcgcatttcgccattttaccctacgcaaac
gcacgtgaaaAAGATAAGAACATAACATACCAAATTCTTCGTGCAGCGCC
ATAGCATAAGAAAAGTCAAGCCCCATTCCACCATATTCAACTGGTTTATT
GACTCCTAAATAGCCAGCATTgccaagttttttgaaaagttcatgTCCAG
GGAAAGATCCTTGCTCCTCCCACTCTTCAACATAAGGATTGATTTCTTTA
TCAATGAATTTCCGAATGTTTCTTCGCAACTCAACATGATCTTCTGTGAA
GACTGATTCATCAGCTAGACTATCTTGAACTTCATAGTTAGATTCAAAAA
GTCTTGATCTTTGTAGAGTATTAGACGAAGAAGTCAAGTTTCTCTTGGAT
AGGATATTAAAAGTTCTTGGAAGGTACCTGGAAGTCTTGAAAATACCAGC
CATTTTTGCTTTGATTATGTAAGGTTCTGTCAGGAGTGACCTTTGGACCA
AAACAGAGCCAGTCTAGCTCTGCAACTTCTCATTTTTTCCGAGAGTGTAA
ACCTTTTAGGTTAGTTAGGGGTAAACAAAAGccgattcaaaatggtagca
aaaaaataatcatatgACGCTTTTTTCAAAACAGGACAAATGATCGACTT
TGAAGTGACTGTCATGTGATTTTCTTATCAACTGATATTTGAAACCAATT
TTGTTACGAAATAAAAATTGTACACTAAAAGAACACTTGACATAGTTAGG
AAACTCATTCCACTTTCTACAAGGCAGGCAGGAGGAAAGGTAaccatttt
tatatattttttatatcagCTCTTCTATCTTTTTTAATTTAGTCTTCTTA
GTTTTATTTATAGCTTATCTTGTTTTCCGAAAGTGGAAAATTTCAGGAGG
AAATATTTCTTgtgaaatcaaaagaaaagaatgcTGGCCAATTTCTGCCA
TCAGTCTGTCAGTTGTTATGCAATTTGGCAGCACAGCTTTCTGTGAAATT
TTGAGCtcgatattttgtaaaaaaaattgtcgtatggaacaaaagaaaat
agtcaaagattaaaaaaatttacagttaACTTAAATTGTAATTGATAGCA
AGGTGTGGggcttttaaagtttttaattatGAATGGCAGTTTTCAGGAGC
TTAATCTTGGCACCAGTTTCAACTTTCCCCCAACTTGCCTTcctcgaaaa
tgaagaagaagaagaaatttgcGGTGTCACGATGGAGCACATGACGTCAT
CCTAGCGGCAAATTACACACTTGTAATTTGTCCAGTATATTGGGGGATGG
GTGGTTTGATGGCGCGGGCGACCTCTTATTCTCTAATCGAGGTTTGCCAT
TGACCTTTTCGTCTTTCCATCCgtcatattgaattgtatgcaaaattatg
gtggccgaattgccatggtgaaattcccttttagaaagtatgcaaaacat
gtgcaaaaagaaagtattaatacaAAACTACATGCATAATTTTCAATTAc
aattaaagtgtaatcttgtagaagaaagattaaattagcttttcttgaaa
actaaaaacaattatattcactcatctcttagaacaagcagttcaaaaaa
caataacattagacataaagtcaaactgaaaaatcaccagcgAAGGTAAA
AATTATTCCTTATTCGGCTGatggtaaattattctcctgggaatagagcc
gccaaatgatcaaatcaaaacattgataatgtgtgacgtcataattactg
ctttcagtttgcgtgttttgaaagtttgatgtgtgtactccgtctttgtg
gagttttttaatggcatgaaaacagaatatgctatgtctttaagaacaaa
tttctaaaaggcttttgttattctgtaaatatttatttttgaattaagaa
attccatcttatATTGTTCTaatattataatatttatttataagatgctt
tgttgtctttttaatctttgtgtaaatttgcatatgttttgcatactttc
caactaaatccaaccacggcattttcgttcctgtgtttttgcatacaatt
taagatggcggatggaaaggcagACAGGTCTATTTTGAAGgatgacaaaa
aattaaaaagggcgcgctatcataGCAGTGAAAATTCGTTCGCCATGGTC
TCTGTTTCAGAAATGTTGGTTCGTTTGTGTTGAAATGCTAAATTTTTGGA
CACAAAAATACAATTGGGTATGGGGATGTGCCACTGATCAAGGTCCCTTT
TTAGTCTCTTTAggctgaagatatctgacaggggtCCCTACTTTACTAAT
TTTTAAAGATGTGTATCTTTCAAGGTTGGCTTTttgttatttattattat
ttttgttatcATTATTATAACGAATGCAAAGTTCAGGCACGCTGTTGGCC
TCTAGAACtggtctttgtttatttacaataaatagCGTAAATCATGGTTT
GCCCAtgctttgtttaaaattttccttaaacGGTTTTATTGATGATACta
attattttgtaaaattttcagggtaaaatgggaaaattttcaatttttca
atctgACAGGTTCCCAAATTTGCCTAACATTCATATCTGAGGGAGTAGTG
CCCCCTGGCTAGTACACAGACCTTATGCAAAATTAAGTCTCTAATGTTGT
ATTCATTATTTCATGATGCATTTTTAAAAAGTCAACCTTTTTGTATTTAG
ACTCACAATTACTGCAAAATGATGAAAGGTTTAATCTTATTGGGTTTGTT
GGGGCTTTCCCTTGCCCATCTTGAGGTGATCGAAGATAAATCATGGCATT
TATGGAAAGGAGTTCACAACAAATATTACCCCAACATGTTTGTTGAGAAG
ATCAGATATAATATTTGGCAAGACAACAGCAATCGTATTGAAAACTTCAA
CAAGTTGAACCAAGGATATTCTCTCCGTATGAATCATTTTGGTGATTTGA
CCAACACTGAATACCGTCAACACATGAATGGTTACAAAATGAGATCCACA
AAACATAGTGAAGCTGCTACCTTTCTTTCACCAACCAATGTCAAAGTACC
AGACACTGTTGACTGGAGACAACAAGGATTCGTCACACCTGTCAAGAACC
AAGGACAATGTGGATCATGCTGGGCTTTCTCCACCGTAagaattcaaaac
aaattttctacAAATATTCTTATTGATGCATTTTTAGTAAGAAATAAACC
AAGGTAAATTACTGCATGCCTATAGTTTCCAAAGACTTTGGTATTTCCAC
CACTCCAAAAATTACATTGATACAACAAATTTGGATATCAGTAATTCAAC
CAAGtgtaggattttttattttgacatttttatatttttttattgttaca
CATTCGatagttttattgttaaaatcaattcaaactttaaaaatgaCTTT
GCATGATTTCGTTTGAGTATTGTGTTTCTTATATGATTTTTCGGATACAA
TAACATGTTCCGTATTTTGACATTTGCAGACTGGTTCATTGGAAGGACAA
CATTTCAAGAAAACTGGAAAATTGGTCAGTCTCAGTGAACAAAACTTGGT
TGATTGTTCAAGCAAAGAAGGAAACATGGGATGTAATGGTGGTTTGATGG
ATCAAGCTTTCGCCTACATCAAAACTAATGGTGGTATTGATACTGAAGAA
AGCTACCCATACAAAGGAGCTGTAAGTGTTTaacatagtccgtataaaaa
accctggtctagACGCGTattgttgtaactttttgttaactttttccttt
gttaaaaaCGATTACAAAAATCCaattgctcagtttttgatcacgttacc
aaatactCCTGTTAGGATTGGTTTGAaagttaatcacatgatcaaaaagg
gagcaaaacaaaataatttctcaacgcaagctCAAGTATAGAGCAAAAAT
AGAAAGAAACGAAAGGCTTATACGGACCATGGTGTTAACTTATACATAGA
TTTGTATATTTATTTGAAACGGGAAAAAACCTctacttttttattatttt
ataatatttCGCGTTAACATTGACGGactcaaatttgaattttattgggT
TTATGTAGGTTTTTTTTCCGACGGAGACGATTAGCCTCATATTTGTCTAG
ATTATAATCAGCTAAAAAGGACGATAAAACAGCACTTTTATCGTTCTCTA
TTTCAAGGGTCAAAACTGTGGGttttctaaatcgcttcagttaTTCCGCC
GCCCTCAAAAGGATGGTTGGATAAAAAATATGATTGAATGTCTGTATAAT
TATTTTAAACGGGAGAAAGCCTCTTATATCTCTTATTCTGAGATTACATT
ATCTTTTCATAAGCGTCTGATTTTTATCTGGAAGTGCTATCTGTATGAAG
TAAAGTTTCAACAGTAGATTTTTTCAACATCTATCTAATAGCTTAAAACA
TCTATAACCCTTTAATACTTTTTGCATTAATTTACAGTCCCCTGGAAGGA
AAGTAATAAATAGTTTTACTGTTGAGAATCACATATTATTGATAAAATAG
GACcgtaataatttttcattttgatttttacaagGACGGACAATGTAAAT
TCGACGCAAAGAACATTGGAGCAAAcgacactggattcgttgacgTCAAG
AGTGGTGATGAAGATGCTTTGAAAACTGCTGTCTCCACAggtaataaaaa
ttttctttctattcAAACTCTTTCCAGTGTGCAAAAGTCTTCTTTCTCAA
CGGGtacaaaaatagtttttttggtctccaaattcaacaaaattctgGTG
AATTTGAAGGGTCTTGCTTATTTGTTGTTTAGAGTTTAATTTTCCGAGCA
AGAACCTTTACTTTGAACACTGTCTTTCTCATTACATCTATCAACAGTTG
GGTGTATTTCTGATTACTCATAActgatgtttttaaaacatcaGTAATTA
CACTTGTGTGTGTCCAACATAGCTAAATAACGATTTCAGCGCTATTGCTG
AGCTTTCTTTCTTACCTTACCACAAAATTTTTGACCGTACAAATCCCCTA
GAAAATACTCAGAAAAGATTTCTTATTATCTTATTAACAAAacttctaat
tttcactttagTTGGACCAATCTCTGTTGCCATTGATGCATCTCACTTCT
CGTTCCAATTCTACCACTCTGGTGTCTACAACTCATGGCTGTGCAGCTCT
ACACGTCTTGATCACGGTGTCTTAGCTATCGGATACGGTACTTACCAAGG
AAAGGACTACTGGCTCGTCAAGAACAGGTGAGAGTAATGGAATCATTGgt
attcatttttgattttcctgaTGGATATAATACAACATTTCGTTATTGTC
GCAACCAATCATTAAAAAGAGAAGTAAAGAGACTGGGAAAGTTTTTTCTA
ATACgctctttttataaaaaccagtaaattttggttcAGACTGGGCTGCT
TTTTGAAATTGTCAGGCTTAATATTCTTACGATGTTCCTAATACGCttag
ttttttttacttaaaaactgaaaatttgttTAAATCTGTACTTCTTTGTA
ATTTCTAAACTCTTAGGATCACATTGCTCTTCATCCTTTGTTCCTGACTG
TTGTCAAAAGTAAGATAAGAGAAGGCAGAAAAGTCGACCGTCTAAACTAG
ATCATAGTCTTTCTTTTAAGAACAAGTATAAACCCCTCAAATTGGATATC
AATTAGATCCTATGTTAtgtttatctggcacccagatggtgaaattttca
tccgacacgctaaaggcctgaaggtcgggaaaatctTCGGGGAAATTGGC
CGCTCCTTTAgggctttagcgtgggcggccgccaatccaccatcggaata
tcaaataaatattatgtccaaaaaatctttctcttcatgattttctctct
ttttgctTTCTAGCTGGGGAACAGGATGGGGATTAAAAGGTTACATCATG
ATGAGCcgaaacaagaaaaatcaatgtGGTATCGCTACTCAAGCTTCATA
CCCACTCGTTTGAAACTAACTAAAGACAACATGCTAGAGGATTTGTAGAT
GATTTTTTTGTAGTGCATTTTTTTTACATAGGGTTTTCTTTAGTTGAAAC
TGATGCTCAGTTTTAAGACAATTATAATCTTTCTCTTCTTGCATTTTTGT
TGAATTCTTGAATTTATCACTGAGATTTATGAAAAGCACCGAGGCTCGAT
AAGGGTCATTCGGAGGAAATTAGTGAAAGGTTCTCTTGTGAATCAGCATC
AGCTAACGAGcaatttcatttaatttattatgatttttaattatttttgt
taacgttttttaaattttgattaatgGTATATATTGATAAGATTATAATT
CTCTTTTTCTTAGAAAGAAACCCATTTCAGTTAAAAGTGAGAGATTGATT
ATTAAACGTGGAAATAAATCTCCTCCTTTTCACAAACCATTGGTGGAAAA
TGGAGCACTCCCACACGCTATGTTCATCCCCAGAAGCCTTAGTGAATGCA
ACTCTAGAATAAACACTATCATTCTTgtattatattttaattttctcGAT
CCTGAACCggtgtaccttaagggaactaattttggcggatttggcgaatt
tagaagaaatttgccaaaaatagttaaaattaaattaaatattttgttca
ctagccaaaataagttcccaccaaaattaaatttcttgtttccttgccta
aataacccctgaaattcatcaaaattgctcaaaataaggccaaatagaac
agatttacgctgtcattcgacaaaattagttcccaccaaaattaaaattt
tttaagattttcgccgctcgccaaaataagttcccttaaggtaacagAAA
AAAGTACTCACCGGAAAAAAGTACTCCTGGTATACTGAGCTTGATGATTA
CATGACTGATCGATAATCAATAAAATAGAACATTTCATTTAGGTTTTAGC
TCGAAGCAAATATGAAGGTGTGGGGGTATGGAGTCTACTTTTGAAAACCT
TTCAAATAGTATATTAAGCATTTTCCAAGAATGCTTCTAAGACTTTGTTC
AAAATCTAAATCGATGGCAAACACTAGCCCAAATACTAATATCATGAATG
attgattttcaaataaaatacatGAAGCAAAGTCTAAGGGGAGTACTTTT
TTTCGGGATTACTTACTTCCGCTGACACCGGGCCCTAGAACACAACCAAC
ACACAGACACCAAAGTCTTAAATTCTAACGGTATTTGGACATCGGTTCAT
AAATTATTCTCCGGAAAGGCGCGGAAAAGGACTGATTTCAGTCAAACctt
taaacttttcaatataggATTTAATGGAATGGAACAGAAGGTTGGACCTG
GCTCCCCCTAGATTGTTATCACTTTATCTATATCATCAACTAGATTCTAG
GAACTTTGCCTAGGAGACTTGCTCCCTGGAAAATTGTcccctttaatttt
gatcaaattgAGATTATGAAggaatccggcgattctcgactgtgttctgg
cgatttttagaaagttcctgtaccaaaatcagtttcatcaaaaattgaac
catgcttaatcgtggacattcttataaatgaaaaaacattttctcaaaaa
tcgaactcggtcatgttttgagcattgcgaatcagggaaaaataaggatg
aaaattcgagaaaatgtaaaaaaaaacggtttttccggcatattcggccg
gaaaaaattttctccgaaaatcgggctctgtcacattttgggcattgcca
ttttgcgtcattgtgcaaaaaatcagacaaaactaatgagccaatcccga
gaaaagctggcaacagacgaaacgaacggacatggcttaatttaaaggac
ctccaccggggtacccggaggtaggtccaaaaagttggAAGGTTGGCATC
GTTGAAGAGATATTTGATATGGATATATTTTCCACtgatttgtttttcaa
aattcattcaagaaagtgaagaaaaatgaagaaaaaaatgattaatcaaa
tttttaagttagtccggcggcgatccaGGATCACCCTTACAATTATATTA
CAAttatatcagaaaattcaacataaacaaaaacttgagcaaacggcttt
aaaccttcaaaggatgtagaaaaagaatcccttagatgaaaatcatgtgt
ttgatttgccgaggtaaaaaattaataacagaaattgaagcttgcaacag
atttacactggaaatactttggaacaacactgacttatcacatctggcta
tcgcttgagccgccatcttgaaactacattatgatctgtaaaaacaacgc
acgctaaaagtacccaaaaagttaacccgatcggaagaaagtttagaaat
caaagtgagatcggaaaaccggattttttttgccgtcttatgatggaaga
accgaattttacctatttgaatgctcagcttaggctgaccaataaaccCA
GGTAAATTACTGCATGCCTATAGTTTCCAAAGACCTTGGTATTTCCATCC
CTCCAAAAATTACATTGTTACATCAAATTTGTACATGCAGTAATTCAATC
gagttttattttaacatttttttaccGTTTGATTCTTACGCTCTcaattt
aaactttaaaaatgaCCTCGCATGATTTCGTTTGAGTATTGTGTTTATAT
ATGATTTTTCAAATACAATAACATATTTCGTATTTTGACATTTGTAGACT
GGTTCATTGGAAGGACAACATTTCAAGAAAACTGGAAAATTGGTCAGTCT
CAGTGAACAAAACTTGGTTGATTGTTCAAGCAAAGAAGGAAACATGGGAT
GTAATGGTGGTTTGATGGATCAAGCTTTCGCTTACATCAAAACTAATGGT
GGTATTGATACTGAAGAAAGCTACCCATACAAAGGAGCTGTAAGTGTTTA
Acttagtccgtataaaaaaccctggtctggacgcgtattgttgtaacttt
ttgttaactttttcctttgttaaaagCGATTACAAAAATccatttgctca
gtttttgatcacgttaccaaatactCCTCTTAGGATTGGTTTGAaagtta
atcacatgatcaaaaagggagcaaaacaaaataatttctcaacgcaagct
CAAGTATAGAGCAAAAATAGAAAcgaaaggcttccagaccggggtttctT
ATACGGACCATGGTGTTAACAATGATATACATAGATTTGTATATTTATTT
GAAACGGGGAAAAACCTctacttttttattattttgtaataTTTCGCGTT
AACATTGACGGactcaaatttgaattttattgggTTTAtgtaggtttttt
ttttttccgacGGAGACGATTAGCCTCATATTTGTCTAGATTATAATCAG
CTAAAAAGGATGGTAAAACAGCACTTTTATCGTTCTCTATTTCAAGGGTC
AAAACTGTGGGttttctaaatcgctttagttaTTCCGCCGCCCTCAAAAG
GACGGTTGGATAAAAGATATGATTGAATGTCTGTATAATTATTTTAAACG
GGAGAAAGCCTCTTATATCTCTTATTCTGAGATTACATTATCTTTTCATA
AGCGTCTGATTTTTATCTGGAAGTGCTATCTGTGTGAAGTAAAGTTTCAA
CAGTAGATTTTTTCAACATCTATCTAATAGCTTAAAACATCTATAACCCT
TTGCATTAATTTACAGTCCCCTGGAAGGAAAGTAATAAATAGTTTTACTG
TTGAGAATCACATATTATTGATAAAATAGGACCgtaataatttttgattt
tgatttttacaagGACGGACAATGTAAATTCGACGCAAAGAACATTGGAG
CAAAcgacactggattcgttgacgTCAAGAGTGGTGATGAAGATGCTTTG
AAAACTGCTGTCGCCACAGgtaataaaaattcaaactaTTCAAACTCTTT
CCAGTGTGCAAAAGTCTTCTTTCTCAACGGGTACAAAATTTGtctccaaa
ttcaacaaaattctgGTAAATTTGAAGGGTCTTGCTTATTTGTTGTTTAG
AGTTTAATTTTCCGAGCAAGAACCTTTACTTTGACCACTGTCTTTCTCAT
TACATCTATCAACAGTTGGGTGTATTTCTGATTACTCATAActgatgttt
ttaaaacatcaGTAATTACACTTGTGTGTGTCCAACATAGCTAAATAACG
ATTTCAGCGCTATTGCTGAGCTTTCTTTCTTACCTTACCACAAAATTTTT
GACCGTACAAATCCCCTAGAAAATACTCAGAAAAGATTTCTTATTATCTT
ATTAACAAAacttctaattttcactttagTTGGACCAATCTCTGTTGCCA
TTGATGCATCTCACTTCTCGTTCCAATTCTACCACTCTGGTGTCTACAAC
TCATGGCTGTGCAGCTCTACACGTCTTGATCACGGTGTCTTAGCTATCGG
ATACGGTACTTACCAAGGAAAGGACTACTGGCTCGTCAAGAACAGGTGAG
AGTAATGGAATCATTGgtattcatttttgattttcctgaTGGATATAATA
CAACATTTCGTTATTGTCGCAACCAATCATTAAAAAGAGAAGTAAAGAGA
CTGGGAAAGTTTTTTCTAATACgctctttttataaaaaccagtaaatttt
ggttcAGACTGGGCTGCTTTTTGAAATTGTCAGGCTTAATATTCTTACGA
TGTTCCTAATACGCttagttttttttacttaaaaactgaaaatttgttTA
AATCTGTTAGAATCTGTACTTCTTTGTAATTTCTGAACTCTTAAGATCAC
ATTGCtcttaatttgtttttatcttttggccaattttcagcctcgtattc
ctTTGTTCCTGACTGTTGTCAAAAGTAAGATAAGAGAAGGCAGAAAAGTC
GACCGTCTAAACTAGATCATAGTCTTTctttttagaacaagtataaaccc
CTCAAATTGGATATCAATTAGATCATATATTAtgtttatctggcacccag
acggtgaaattttcatccgacacgctaaaggtctgaaggtcgggaaaatt
ttcggggaaattggcccgctcctttaggaCTTtcgcgtgggcggccgcca
atccaccatgggaatatcagataaatatTATGTCCAAAAAGTCTTTCTCT
TCatgattttctctctttttgctTTCCAGCTGGGGAACAGGATGGGGATT
AAAAGGTTACATCATGATGAGCcgaaacaagaaaaatcaatgtGGTATCG
CTACTCAAGCTTCATACCCACTCGTTTGAAACTAAAGACAACATGCTAGA
GGATTTGTAGATGATTTTTTTGTAGTGCATTTTTTTTACATAGGGTTATC
TTTAGTTGAAACTGATGCTTAGTTTTAAGGTAATTACAATCTTTCTCTTT
TTGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007029XLOC_007029Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012509-exon-sc0000145-1491911889:276644..277032TCONS_00012509-exon-sc0000145-1491911889:276644..277032Clytia hemisphaericaexon
TCONS_00012509-exon-sc0000145-1510915933:276644..277032TCONS_00012509-exon-sc0000145-1510915933:276644..277032Clytia hemisphaericaexon
TCONS_00012509-exon-sc0000145-1575043694:276644..277032TCONS_00012509-exon-sc0000145-1575043694:276644..277032Clytia hemisphaericaexon
TCONS_00012509-exon-sc0000145-1491911889:280370..281082TCONS_00012509-exon-sc0000145-1491911889:280370..281082Clytia hemisphaericaexon
TCONS_00012509-exon-sc0000145-1510915933:280370..281082TCONS_00012509-exon-sc0000145-1510915933:280370..281082Clytia hemisphaericaexon
TCONS_00012509-exon-sc0000145-1575043694:280370..281082TCONS_00012509-exon-sc0000145-1575043694:280370..281082Clytia hemisphaericaexon
TCONS_00012509-exon-sc0000145-1491911889:282994..283428TCONS_00012509-exon-sc0000145-1491911889:282994..283428Clytia hemisphaericaexon
TCONS_00012509-exon-sc0000145-1510915933:282994..283428TCONS_00012509-exon-sc0000145-1510915933:282994..283428Clytia hemisphaericaexon
TCONS_00012509-exon-sc0000145-1575043694:282994..283428TCONS_00012509-exon-sc0000145-1575043694:282994..283428Clytia hemisphaericaexon
TCONS_00012509-exon-sc0000145-1491911889:283773..283910TCONS_00012509-exon-sc0000145-1491911889:283773..283910Clytia hemisphaericaexon
TCONS_00012509-exon-sc0000145-1510915933:283773..283910TCONS_00012509-exon-sc0000145-1510915933:283773..283910Clytia hemisphaericaexon
TCONS_00012509-exon-sc0000145-1575043694:283773..283910TCONS_00012509-exon-sc0000145-1575043694:283773..283910Clytia hemisphaericaexon
TCONS_00012509-exon-sc0000145-1491911889:289079..289132TCONS_00012509-exon-sc0000145-1491911889:289079..289132Clytia hemisphaericaexon
TCONS_00012509-exon-sc0000145-1510915933:289079..289132TCONS_00012509-exon-sc0000145-1510915933:289079..289132Clytia hemisphaericaexon
TCONS_00012509-exon-sc0000145-1575043694:289079..289132TCONS_00012509-exon-sc0000145-1575043694:289079..289132Clytia hemisphaericaexon
TCONS_00012509-exon-sc0000145-1491911889:290007..290112TCONS_00012509-exon-sc0000145-1491911889:290007..290112Clytia hemisphaericaexon
TCONS_00012509-exon-sc0000145-1510915933:290007..290112TCONS_00012509-exon-sc0000145-1510915933:290007..290112Clytia hemisphaericaexon
TCONS_00012509-exon-sc0000145-1575043694:290007..290112TCONS_00012509-exon-sc0000145-1575043694:290007..290112Clytia hemisphaericaexon
TCONS_00012509-exon-sc0000145-1491911889:290523..290688TCONS_00012509-exon-sc0000145-1491911889:290523..290688Clytia hemisphaericaexon
TCONS_00012509-exon-sc0000145-1510915933:290523..290688TCONS_00012509-exon-sc0000145-1510915933:290523..290688Clytia hemisphaericaexon
TCONS_00012509-exon-sc0000145-1575043694:290523..290688TCONS_00012509-exon-sc0000145-1575043694:290523..290688Clytia hemisphaericaexon
TCONS_00012509-exon-sc0000145-1491911889:291373..291598TCONS_00012509-exon-sc0000145-1491911889:291373..291598Clytia hemisphaericaexon
TCONS_00012509-exon-sc0000145-1510915933:291373..291598TCONS_00012509-exon-sc0000145-1510915933:291373..291598Clytia hemisphaericaexon
TCONS_00012509-exon-sc0000145-1575043694:291373..291598TCONS_00012509-exon-sc0000145-1575043694:291373..291598Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000145supercontigsc0000145:276644..291598 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
30.5462	33.4967	30.9727	28.8665	20.4058	15.6887	17.7605	20.1712	56.4947	47.7054	62.4378	42.3942	79.8123	84.8358	176.346	189.109	118.567	114.384	119.18	128.678	62.355	64.4561	107.189	132.135	198.545	186.171	123.275	201.474	500.168	453.231
Blast
[Close]
BLAST of TCONS_00012509 vs. Swiss-Prot (Human)
Match: CATL2 (Cathepsin L2 OS=Homo sapiens GN=CTSV PE=1 SV=2)

HSP 1 Score: 341.658 bits (875), Expect = 3.627e-110
Identity = 171/313 (54.63%), Postives = 212/313 (67.73%), Query Frame = 2 
Query: 1187 DKSWHLWKGVHNKYYPNMFVEKIRYNIWQDNSNRIE----NFNKLNQGYSLRMNHFGDLTNTEYRQHMNGYKMRSTKHSEAATFLSPTNVKVPDTVDWRQQGFVTPVKNQGQCGSCWAFSTTGSLEGQHFKKTGKLVSLSEQNLVDCSSKEGNMGCNGGLMDQAFAYIKTNGGIDTEESYPYKGADGQCKFDAKNIGANDTGFVDVKSGDEDALKTAVATVGPISVAIDASHFSFQFYHSGVYNSWLCSSTRLDHGVLAIGYGTYQGKD-----YWLVKNSWGTGWGLKGYIMMSRNKKNQCGIATQASYPLV 2098
            D  W+ WK  H + Y     E  R  +W+ N   IE     +++   G+++ MN FGD+TN E+RQ M  +  R+ K  +   F  P  + +P +VDWR++G+VTPVKNQ QCGSCWAFS TG+LEGQ F+KTGKLVSLSEQNLVDCS  +GN GCNGG M +AF Y+K NGG+D+EESYPY   D  CK+  +N  ANDTGF  V  G E AL  AVATVGPISVA+DA H SFQFY SG+Y    CSS  LDHGVL +GYG ++G +     YWLVKNSWG  WG  GY+ ++++K N CGIAT ASYP V
Sbjct:   26 DTKWYQWKATHRRLY-GANEEGWRRAVWEKNMKMIELHNGEYSQGKHGFTMAMNAFGDMTNEEFRQMMGCF--RNQKFRKGKVFREPLFLDLPKSVDWRKKGYVTPVKNQKQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQGNQGCNGGFMARAFQYVKENGGLDSEESYPYVAVDEICKYRPENSVANDTGFTVVAPGKEKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSKNLDHGVLVVGYG-FEGANSNNSKYWLVKNSWGPEWGSNGYVKIAKDKNNHCGIATAASYPNV 334
The following BLAST results are available for this feature:
BLAST of TCONS_00012509 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CATL23.627e-11054.63Cathepsin L2 OS=Homo sapiens GN=CTSV PE=1 SV=2[more]
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