TCONS_00012498 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012498
Unique NameTCONS_00012498
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1285

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012498 ID=TCONS_00012498|Name=TCONS_00012498|organism=Clytia hemisphaerica|type=transcript|length=1285bp
ttcgctcgaacttcaattttcgaaaagtgccaatatgttatggcactgat
tgtagccTTTTAAACAAAAGGCAATCTATATTATTAATTGTCAATTATAT
TTATTGTAAGCTGtgcaaaattatgaaaaaaaattttccctggtATGAGT
CAAAAAGGTCCCAAAAACTAAATATAAAAGTGCTGTAAAATTGTTATAAA
AGTTCTAAGTTTTAAATATCCGTCAATGTGGGTAGTAATTGTTTCAAATC
AAATATcctaaaattatcaaaatccaTCCAAAGCTTTACATGGTTTGAGA
AAATATGTCCATTTTCAAGGTGCTAAATAACTTCTTAGCCGAATATGAGC
GTGTCTTAAATGATCCTTCCTTTAATTGTCTGTAAAGTAACCATTATcca
ttttctccaaaaatatttccctAAATGTTATCAGCTCCTTTCAAAGCTCA
AAGCTTTCGGCAAAGAGTAACTCCATCAGCGATGTTTAAGAAAGACAATT
GAAAACGGTTATCTAATTTAAGTTTCTGATTTAACTTGTAGAGAAATTCG
GCTGAATGGCGTTGCTCAGGCGTCATTTCTTGTGTCAAATCTAACACTAA
GCCACCTTGCAACATATTATCAAAAGCTAAAATGCCACCGCTTTTCAACA
GCAGTATGGCACGATCTAAATACTTTTCATATGAAATTTTATCAGCATCC
ACATAAATGAAATCGAAGGTCTCCGTTTCTCCCTTAGAGATCAACTCATC
CAAAGATTCCACAGCCGGCCCAATCTTGACCACAATTTTATCTTTGACGC
CTGCTTTCTCGAAAAAGGGATACCCTTCCTTAACATAATCCTCGTTAATA
TCCAGGGCGTAAATAACGCCATCACTTGGAATGGTAAGGGCGGTGCTCAA
GACATTATACCCAGTATAGGTACCAACTTCAATGCATTTCTTCGCATCTA
ACATATTCAACAAAAGtcggaaaaattgaatttggcaTGGATCAGATACC
ATATCATAATCTTCAACGTTTTTTATAGTATGCTCACGCAATTCTTTCAA
AACAGCAGGCTCTCTCAACGAATTTTCTTTTACGTATTTGTCCGCTACCC
tcgaatttttcaaatcaattcccTGATTTACAGGTTCCTTTGGAGGGGTC
GGAGTTGCGGACATATACCGGACAGCCAAATTACCGGcaacaaatgacgt
cacagCAATGCCAGCGGCGATACCAAGCTCTTTGTTGAGTAaagaagaca
ttttttgtttttatgtttgtgtTTTTGTCTCTAAA
Run BLAST on NCBI

transcript from alignment at sc0000145:199129..202225+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012498 ID=TCONS_00012498|Name=TCONS_00012498|organism=Clytia hemisphaerica|type=transcript|length=3097bp|location=Sequence derived from alignment at sc0000145:199129..202225+ (Clytia hemisphaerica)
ttcgctcgaacttcaattttcgaaaagtgccaatatgttatggcactgat
tgtagccTTTTAAACAAAAGGCAATCTATATTATTAATTGTCAATTATAT
TTATTGTAAGCTGtgcaaaattatgaaaaaaaattttccctggtATGAGT
CAAAAAGGTCCCAAAAACTAAATATAAAAGTGCTGTAAAATTGTTATAAA
AGTTCTAAGTTTTAAATATCCGTCAATGTGGGTAGTAATTGTTTCAAATC
AAATATcctaaaattatcaaaatccaTCCAAAGCTTTACATGGTTTGAGA
AAATATGTCCATTTTCAAGGTGCTAAATAACTTCTTAGCCGAATATGAGC
GTGTCTTAAATGATCCTTCCTTTAATTGTCTGTAAAGTAACCATTATcca
ttttctccaaaaatatttccctAAATGTTATCAGCTCCTTTCAAAGCTCA
AAGCTTTCGGCAAAGAGTAACTCCATCAGCGATGTTTAAGAAAGACAATT
GAAAACGGTTATCTAATTTAAGTTTCTGATTTAACTTGTAGAGAAATTCG
GCTGAATGGCGTTGCTCAGGCGTCATTTCTTGTGTCAAATCTAACACTAA
GCCACCTTGCAACATATTATCAAAAGCTAAAATGCCACCGCTTTTCAACA
GCAGTATGGCACGATCTAAATACTTTTCATATGAAATTTTATCAGCATCC
ACATAAATGAAATCGAAGGTCTCCGTTTCTCCCTTAGAGATCAACTCATC
CAAAGATTCCACAGCCGGCCCAATCTTGACCACAATTTTATCTTTGACGC
CTGCTTTCTCGAAAAAGGGATACCCTTCCTTAACATAATCCTCGTTAACA
TCCAGGGCGTAAATAACGCCATCACTTGGAATGGTAAGGGCGGTGCTCAA
GACATTATACCCAGTATAGGTACCAACTTCAATGCATTTCTTCGCATCTA
ACATATTCAACAAAAGtcggaaaaattgaatttgacatGGATCAGACACC
ATCTTAGCCATTGGGACATTCTTGAAAGTATACTCACGCAATTCTTTTAA
AACAGCAGGCTCTCTCAACGAATTTTCTTCTACATATTCGTCCGCTGTCC
GCGATTTCTTCAAATTATCTTGCTTTGCAGATTGTTGTTCCTTTGGAGGG
GTAGGAGTTGCGGACATATACCGGGCAGCCAAATTACCGGcaacaaatga
cgtcacagCAATGCCAGCGGCGATACCAAGCTCTTTGTTGAGTAAAGAag
acatttttatgtttttgtgtTTGTGTTTTTGTCTCTAAAATGaaaggaaa
caaaaattgagttactttgaaattttgccattccaaaagttaaatttaaa
gaaaaacaacgaagttttatttcaaaattgagcaaaagcttttcgataaa
aaaaaatcttcgatGCTACAAGCGATGATTtaatcgaaaagcttttgcgc
aattttaaaataaaacttagTTGTTTTTCGTTAAGTTCAAAAGTTTAGTT
ACTAACGTAAAATCGGGTGAACAAATTTAGCACCGGTGAGAAAAATCCAA
AACATCTTAAAGCTCCTTCTCAGCAATCTAAATTACAATTTAATAATACT
TTGTAGTCGTTGAATGGAAAAATACTGTATAAAAAGGGTATAAATATCTA
ATAATTTTCTAAATATTGCAATCAACCtattaaagatgaaaaaaaagatt
ttagcgCGGTGGATCAACTTGTAAGAGTAAATTATAATAtgtaaaatttc
gcgaaaactATTAACTTCAAGAGGACATTTTGAAACAATTGAATTACCAA
ACGAAAATAAGACATTTTTATGCAaattccagtcaaaatttgttATTTAG
AAGCATATTCAGCAGTTTCTACACGCTTTATCGTTATTGACGTCATCAAT
AGGCGAAAACTCAGAATTGGAAAGCGGCGGCATGAAAGGGTTGATAAAGT
CTATGAAAAAGTGTCAggtcaagtcaaaaaaattgttatgcaaaataaat
taaaaatactaaaaaagtttataaaattaaaaaaaagaaaacgctaTAGC
CCGATTACATTAAAAAAGCCTAGCATAAAAATTTCATTCACTTACAGTAG
TCATATTGTTTAGTTTCTTGGAATGTCTTTGTTGAGTCACTGAATATACT
GCATTAAATGTAAAAAAAGATACCGTGTAATCTCGTCCAAAATTTGTACA
CATCCTCACCAAGAATCTCGTCCAAAATTCAGATTTAACACCAGCTCCTT
CAAAAACACTCAAAGTTTTCGGCAAAGAGTAAGTCCATCAGCGATGTTTA
AGAAAGACAATTGAAAACGTTTatctaatttcaatttctgatttAGCTTG
TGAATATATTCAGCTCTATGGCGTCGCTCAGGCGTCATTTCTTGTGTCAA
ATCGGCCACTCGACCCGCTTGCAACATATTATCAAAAGCTAAAATGCCAC
CGCATCTAAGCAATAGCATAGCACGATCTAGATACTTTTCATAAGAGGTT
TTGTCAGCATCCACATAAATGAAATCGAAGGTCTCCGTTTCTCCCTTAGA
GATCAACTCATCCAAAGATTCCACAGCCGGCCCAATCTTGACCACAATTT
TATCTTTGACGCCAGCTTTCTCGAAAAAGGGATACCCTTCCTTAACATAA
TCCTCGTTAATATCCAGGGCGTAAATAACGCCATCACTTGGAATGGTAAG
GGCGGTGCTCAAGACATTATACCCAGTATAGGTACCAACTTCAATGCATT
TCTTCGCATCTAACATATTCAACAAAAGtcggaaaaattgaatttggcaT
GGATCAGATACCATATCATAATCTTCAACGTTTTTTATAGTATGCTCACG
CAATTCTTTCAAAACAGCAGGCTCTCTCAACGAATTTTCTTTTACGTATT
TGTCCGCTACCCtcgaatttttcaaatcaattcccTGATTTACAGGTTCC
TTTGGAGGGGTCGGAGTTGCGGACATATACCGGACAGCCAAATTACCGGc
aacaaatgacgtcacagCAATGCCAGCGGCGATACCAAGCTCTTTGTTGA
GTAaagaagacattttttgtttttatgtttgtgtTTTTGTCTCTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007027XLOC_007027Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012498-exon-sc0000145-1491911889:199129..199962TCONS_00012498-exon-sc0000145-1491911889:199129..199962Clytia hemisphaericaexon
TCONS_00012498-exon-sc0000145-1510915933:199129..199962TCONS_00012498-exon-sc0000145-1510915933:199129..199962Clytia hemisphaericaexon
TCONS_00012498-exon-sc0000145-1575043694:199129..199962TCONS_00012498-exon-sc0000145-1575043694:199129..199962Clytia hemisphaericaexon
TCONS_00012498-exon-sc0000145-1491911889:201775..202225TCONS_00012498-exon-sc0000145-1491911889:201775..202225Clytia hemisphaericaexon
TCONS_00012498-exon-sc0000145-1510915933:201775..202225TCONS_00012498-exon-sc0000145-1510915933:201775..202225Clytia hemisphaericaexon
TCONS_00012498-exon-sc0000145-1575043694:201775..202225TCONS_00012498-exon-sc0000145-1575043694:201775..202225Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000145supercontigsc0000145:199129..202225 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
21.7499	27.7681	26.5848	32.7812	32.5258	27.5084	23.9516	33.0646	27.7378	22.5489	28.8799	19.6745	19.0214	17.1857	22.2256	24.6005	29.279	24.9581	15.1602	13.8231	10.2814	13.5838	25.5657	18.8997	12.8961	16.2377	21.6852	15.9922	20.2849	18.5856
Blast
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BLAST of TCONS_00012498 vs. Swiss-Prot (Human)
Match: CMTD1 (Catechol O-methyltransferase domain-containing protein 1 OS=Homo sapiens GN=COMTD1 PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.353e-33
Identity = 76/214 (35.51%), Postives = 126/214 (58.88%), Query Frame = -2 
Query:  451 KYVKENSLREPAVLKELREHTIKNVEDYDMVSDPC-QIQFFRLLLNMLDAKKCIEVGTYTGYNVLSTALTIPSDGVIYALDINEDYVKEGYPFFEKAGVKDKIVVKIGPAVESLDELISKGETETFDFIYVDADKISYEKYLDRAILLLKSGGILAFDNMLQGGLVLDLTQEMTPEQRHSAEFLYKLNQKLKLDNRFQLSFLNIADGVTLCRKL 1089
            +Y+   S+RE   L+ LR  T++  +   M++  C Q Q    L  ++ AKK +++GT+TGY+ L+ AL +P+DG +   +++    + G P + +A  + KI +++ PA+E+LDEL++ GE  TFD   VDADK +   Y +R + LL+ GGILA   +L  G VL       P+   +AE +  LN++++ D R  +S L + DG+TL  K+
Sbjct:   56 QYLLSRSMREHPALRSLRLLTLEQPQGDSMMT--CEQAQLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVAVVDADKENCSAYYERCLQLLRPGGILAVLRVLWRGKVLQ-----PPKGDVAAECVRNLNERIRRDVRVYISLLPLGDGLTLAFKI 262
The following BLAST results are available for this feature:
BLAST of TCONS_00012498 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CMTD11.353e-3335.51Catechol O-methyltransferase domain-containing pro... [more]
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