Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012495 ID=TCONS_00012495|Name=TCONS_00012495|organism=Clytia hemisphaerica|type=transcript|length=3088bpRun BLAST on NCBI protein sequence of TCONS_00012495-protein >TCONS_00012495-protein ID=TCONS_00012495-protein|Name=TCONS_00012495-protein|organism=Clytia hemisphaerica|type=polypeptide|length=423bp MARAARAITKDIQSYIKKYSRYHQSVLSIEQFTHFGKTASVKESFSFLRFRun BLAST on NCBI transcript from alignment at sc0000145:73460..84453+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00012495 ID=TCONS_00012495|Name=TCONS_00012495|organism=Clytia hemisphaerica|type=transcript|length=10994bp|location=Sequence derived from alignment at sc0000145:73460..84453+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000145:73460..84453+ >TCONS_00012495 ID=TCONS_00012495|Name=TCONS_00012495|organism=Clytia hemisphaerica|type=CDS|length=15264bp|location=Sequence derived from alignment at sc0000145:73460..84453+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00012495 vs. Swiss-Prot (Human)
Match: PDK2 ([Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 2, mitochondrial OS=Homo sapiens GN=PDK2 PE=1 SV=2) HSP 1 Score: 358.221 bits (918), Expect = 8.627e-113 Identity = 182/370 (49.19%), Postives = 251/370 (67.84%), Query Frame = 1 Query: 112 YIKKYSRYHQSVLSIEQFTHFGKT-ASVKESFSFLRFEVPIRLAHIMQEINHLPKVLLQTPSVELVKSWYVQSFVDLMDFLNDDFSED--DIERFTDTLYTIKQRHDKTVETMAQGVIELKSA-QNKFIIDPKMQYFLDRFYMNRIGIRLLMTNHIALF-GKHPPSSGKFIGVFEPNCRIKKVLEDAVAGASDLCARTYFDSPMVKINEHGVREGEDEVIAAYVPSHLHFMLFELLKNAMRATVEKHEAKDEIPDINIDIVKGNEDLTIRISDLGGGICRNKIKDLFTYHYSTAPEPDQLEGMAPLAGYGYGLPLSKLYAKYFGGDIHISSLEGLGSDTFVYLKALSQDAQEVIPMYNSLVAKEYEEIDQ 1206 YI+ +S++ S LS++QF FG + A K SF+FLR E+P+RLA+IM+EIN LP +L TPSV+LV+SWYVQS +D+M+FL+ D ED + +FTD L TI+ RH+ V TMAQGV+E K + + + +QYFLDRFY++RI IR+L+ H +F G P+ K IG +PNC + +V++DA A LC + Y SP ++I E + + YVPSHL+ MLFEL KNAMRATVE HE+ +P I + + G EDL+I++SD GGG+ KI+ LF+Y YSTAP P G PLAG+GYGLP+S+LYAKYF GD+ + S+EG G+D +YLKALS D+ E +P+YN + Y+ I + Sbjct: 19 YIEHFSKFSPSPLSMKQFLDFGSSNACEKTSFTFLRQELPVRLANIMKEINLLPDRVLSTPSVQLVQSWYVQSLLDIMEFLDKD-PEDHRTLSQFTDALVTIRNRHNDVVPTMAQGVLEYKDTYGDDPVSNQNIQYFLDRFYLSRISIRMLINQHTLIFDGSTNPAHPKHIGSIDPNCNVSEVVKDAYDMAKLLCDKYYMASPDLEIQEINAANSKQPIHMVYVPSHLYHMLFELFKNAMRATVESHESSLILPPIKVMVALGEEDLSIKMSDRGGGVPLRKIERLFSYMYSTAPTPQPGTGGTPLAGFGYGLPISRLYAKYFQGDLQLFSMEGFGTDAVIYLKALSTDSVERLPVYNKSAWRHYQTIQE 387 The following BLAST results are available for this feature:
BLAST of TCONS_00012495 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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