|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012468 ID=TCONS_00012468|Name=TCONS_00012468|organism=Clytia hemisphaerica|type=transcript|length=830bp
tgatatctttctctACGTCTTTCCAGACTGTatagttttagagttttaag
tttttcccAATAGTTCAGTTTTTGTAAAGAGAATATTCCATTTAAGAATG
ATTTTTGAAGCTGTTCTAGTCGTTGCATTTGGTGTCTCTTGGATGGTGAC
CATAGCTGTGAACAGTAATCAATGTCTGCCAATGTCTTCCATAAGGTCAG
CATTACAGTAGGGTcccttgttttgaaagttcgaTATATCCATGAACTGA
TCCCTTTGACTTTGTCGATTACATTTTCTATATGATTGTCATATGTCATA
CCCACATCTAAAGTGATCCCAAGGTCTTTGACTGTAGTCTTGGTCTCTAT
CACCTTTTGGGTATCAGAGAAGTATTTGGAGAGTTCTTTAAGTTCTTCAT
TTCTACCATAATTGAGATGCTCAAATTTAAGTCCATTCAATTTCATGTTA
TTCAATCCAGTCCACTCATAGACTGCGTTCATGTCATCTTGGATCTGAAT
GATATCAGCAtggtttttgatttctttcattaGACGTGTATCATCAGCAA
ATGATGATAAGAAAGAGTGTAATATCTTTTTGTCAATGTCTTGTATCATT
ATCAGAAACAGTAGTGGTCCAAGCACAGATCCTTGGGGAACACCAGAGAT
GACTGCTGACCTTTCTGATAGTGTGTAGTCAACAGAGACTTGTTGCGTTC
TACCTGTTAGGAAGGATTTGATCCAAGCAAGCAGTTTGCCTTTGATGCCA
TTGGTTTTAATTTTGTTCAGAAGAATGGTATGGTCGACTCTGTCGAAAGC
CTTGCGAAAGTCAAGGTAGATCACGTCCAC Run BLAST on NCBI protein sequence of TCONS_00012468-protein >TCONS_00012468-protein ID=TCONS_00012468-protein|Name=TCONS_00012468-protein|organism=Clytia hemisphaerica|type=polypeptide|length=276bp
VDVIYLDFRKAFDRVDHTILLNKIKTNGIKGKLLAWIKSFLTGRTQQVSV
DYTLSERSAVISGVPQGSVLGPLLFLIMIQDIDKKILHSFLSSFADDTRL
MKEIKNHADIIQIQDDMNAVYEWTGLNNMKLNGLKFEHLNYGRNEELKEL
SKYFSDTQKVIETKTTVKDLGITLDVGMTYDNHIENVIDKVKGISSWIYR
TFKTRDPTVMLTLWKTLADIDYCSQLWSPSKRHQMQRLEQLQKSFLNGIF
SLQKLNYWEKLKTLKLYSLERRRERY Run BLAST on NCBI transcript from alignment at sc0000144:249790..250619 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012468 ID=TCONS_00012468|Name=TCONS_00012468|organism=Clytia hemisphaerica|type=transcript|length=830bp|location=Sequence derived from alignment at sc0000144:249790..250619 (Clytia hemisphaerica)
GTGGACGTGATCTACCTTGACTTTCGCAAGGCTTTCGACAGAGTCGACCA
TACCATTCTTCTGAACAAAATTAAAACCAATGGCATCAAAGGCAAACTGC
TTGCTTGGATCAAATCCTTCCTAACAGGTAGAACGCAACAAGTCTCTGTT
GACTACACACTATCAGAAAGGTCAGCAGTCATCTCTGGTGTTCCCCAAGG
ATCTGTGCTTGGACCACTACTGTTTCTGATAATGATACAAGACATTGACA
AAAAGATATTACACTCTTTCTTATCATCATTTGCTGATGATACACGTCta
atgaaagaaatcaaaaaccaTGCTGATATCATTCAGATCCAAGATGACAT
GAACGCAGTCTATGAGTGGACTGGATTGAATAACATGAAATTGAATGGAC
TTAAATTTGAGCATCTCAATTATGGTAGAAATGAAGAACTTAAAGAACTC
TCCAAATACTTCTCTGATACCCAAAAGGTGATAGAGACCAAGACTACAGT
CAAAGACCTTGGGATCACTTTAGATGTGGGTATGACATATGACAATCATA
TAGAAAATGTAATCGACAAAGTCAAAGGGATCAGTTCATGGATATAtcga
actttcaaaacaagggACCCTACTGTAATGCTGACCTTATGGAAGACATT
GGCAGACATTGATTACTGTTCACAGCTATGGTCACCATCCAAGAGACACC
AAATGCAACGACTAGAACAGCTTCAAAAATCATTCTTAAATGGAATATTC
TCTTTACAAAAACTGAACTATTgggaaaaacttaaaactctaaaactatA
CAGTCTGGAAAGACGTagagaaagatatca Coding sequence (CDS) from alignment at sc0000144:249790..250619 >TCONS_00012468 ID=TCONS_00012468|Name=TCONS_00012468|organism=Clytia hemisphaerica|type=CDS|length=828bp|location=Sequence derived from alignment at sc0000144:249790..250619 (Clytia hemisphaerica)
GTGGACGTGATCTACCTTGACTTTCGCAAGGCTTTCGACAGAGTCGACCA
TACCATTCTTCTGAACAAAATTAAAACCAATGGCATCAAAGGCAAACTGC
TTGCTTGGATCAAATCCTTCCTAACAGGTAGAACGCAACAAGTCTCTGTT
GACTACACACTATCAGAAAGGTCAGCAGTCATCTCTGGTGTTCCCCAAGG
ATCTGTGCTTGGACCACTACTGTTTCTGATAATGATACAAGACATTGACA
AAAAGATATTACACTCTTTCTTATCATCATTTGCTGATGATACACGTCta
atgaaagaaatcaaaaaccaTGCTGATATCATTCAGATCCAAGATGACAT
GAACGCAGTCTATGAGTGGACTGGATTGAATAACATGAAATTGAATGGAC
TTAAATTTGAGCATCTCAATTATGGTAGAAATGAAGAACTTAAAGAACTC
TCCAAATACTTCTCTGATACCCAAAAGGTGATAGAGACCAAGACTACAGT
CAAAGACCTTGGGATCACTTTAGATGTGGGTATGACATATGACAATCATA
TAGAAAATGTAATCGACAAAGTCAAAGGGATCAGTTCATGGATATAtcga
actttcaaaacaagggACCCTACTGTAATGCTGACCTTATGGAAGACATT
GGCAGACATTGATTACTGTTCACAGCTATGGTCACCATCCAAGAGACACC
AAATGCAACGACTAGAACAGCTTCAAAAATCATTCTTAAATGGAATATTC
TCTTTACAAAAACTGAACTATTgggaaaaacttaaaactctaaaactatA
CAGTCTGGAAAGACGTagagaaagatat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012468-exon-sc0000144-1491911889:249790..250619 | TCONS_00012468-exon-sc0000144-1491911889:249790..250619 | Clytia hemisphaerica | exon |
| TCONS_00012468-exon-sc0000144-1510915933:249790..250619 | TCONS_00012468-exon-sc0000144-1510915933:249790..250619 | Clytia hemisphaerica | exon |
| TCONS_00012468-exon-sc0000144-1575043694:249790..250619 | TCONS_00012468-exon-sc0000144-1575043694:249790..250619 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000144 | supercontig | sc0000144:249790..250619 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
|
