TCONS_00012459 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012459
Unique NameTCONS_00012459
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length807

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012459 ID=TCONS_00012459|Name=TCONS_00012459|organism=Clytia hemisphaerica|type=transcript|length=807bp
gaaaagggaacaggattaaagaataaaaagaagaccatattatgttagat
ttaaatcattctttttaataattttcctaacttaattggaaaatagatga
ttaacttttatatttgaacaatatatttgaataaagatgaagatttttaa
atttgtttgctaaaataaggaatttaaaatataaatattgggacctgaaa
ttacacgcgcaaaatctggcccgaacatggtctgAAACTGTGCGGGCTCG
cgcgggccatttttaaaaagtattaatcaagaggcctgaacatgttcggg
ccatgttgtGGGTCGTATATACTGTACTTATTATTTTCAACTAGCAGTTT
GTTTCCCTGTTCATATTCAAGATTCAACAAAACATCCTAGGGCTTCTCTT
TTTCACGGCATCACAAATAAGCCGATATAGAAAAATACAGGAGATGCTAT
GTTTAAAAGTTTGGGAATTTTTTTCCCGCGTCATAACTTATACGGGTCTG
GGAACCAGACTGTGCAAAAGTCATATACCGAAACCACTACTCGAAAAAAA
AGCGAAATGTACCAAGCAGAAGTGGGAAGAAGCGTCTCTGGCAGTGGAAC
ATCAATACTTGAAGTGAGAAAGGAAAAAAggttttcatcaattttcagtA
TATATATTTCATAATATGACGCTAAGGGTAGGGGGTGGGTGGGTTTTTTA
ATTAGCGTCAGAATGACGCTGCTTAAGCGTGGgaaaaatcgatatgtgag
tgccCCCTTAGAGTGAAGAGATATCAAcgcgttatgtaatgttaattgct
attagta
Run BLAST on NCBI

transcript from alignment at sc0000144:28130..28936

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012459 ID=TCONS_00012459|Name=TCONS_00012459|organism=Clytia hemisphaerica|type=transcript|length=807bp|location=Sequence derived from alignment at sc0000144:28130..28936 (Clytia hemisphaerica)
tactaatagcaattaacattacataacgcgTTGATATCTCTTCACTCTAA
GGGggcactcacatatcgatttttcCCACGCTTAAGCAGCGTCATTCTGA
CGCTAATTAAAAAACCCACCCACCCCCTACCCTTAGCGTCATATTATGAA
ATATATATactgaaaattgatgaaaaccTTTTTTCCTTTCTCACTTCAAG
TATTGATGTTCCACTGCCAGAGACGCTTCTTCCCACTTCTGCTTGGTACA
TTTCGCTTTTTTTTCGAGTAGTGGTTTCGGTATATGACTTTTGCACAGTC
TGGTTCCCAGACCCGTATAAGTTATGACGCGGGAAAAAAATTCCCAAACT
TTTAAACATAGCATCTCCTGTATTTTTCTATATCGGCTTATTTGTGATGC
CGTGAAAAAGAGAAGCCCTAGGATGTTTTGTTGAATCTTGAATATGAACA
GGGAAACAAACTGCTAGTTGAAAATAATAAGTACAGTATATACGACCCac
aacatggcccgaacatgttcaggcctcttgattaatactttttaaaaatg
gcccgcgCGAGCCCGCACAGTTTcagaccatgttcgggccagattttgcg
cgtgtaatttcaggtcccaatatttatattttaaattccttattttagca
aacaaatttaaaaatcttcatctttattcaaatatattgttcaaatataa
aagttaatcatctattttccaattaagttaggaaaattattaaaaagaat
gatttaaatctaacataatatggtcttctttttattctttaatcctgttc
ccttttc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006998XLOC_006998Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012459-exon-sc0000144-1491911889:28130..28936TCONS_00012459-exon-sc0000144-1491911889:28130..28936Clytia hemisphaericaexon
TCONS_00012459-exon-sc0000144-1510915933:28130..28936TCONS_00012459-exon-sc0000144-1510915933:28130..28936Clytia hemisphaericaexon
TCONS_00012459-exon-sc0000144-1575043694:28130..28936TCONS_00012459-exon-sc0000144-1575043694:28130..28936Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000144supercontigsc0000144:28130..28936 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.84771	2.14058	3.35867	3.68025	3.52027	3.60365	2.13569	3.99881	3.19962	3.09628	3.12554	4.22775	2.99871	2.90931	2.32447	3.54294	2.40499	2.60198	3.40558	3.36571	4.01527	2.51808	0.612212	1.79346	2.99376	3.69513	2.60319	3.21228	2.6998	2.48231
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00012459 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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