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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012441 ID=TCONS_00012441|Name=TCONS_00012441|organism=Clytia hemisphaerica|type=transcript|length=4171bpRun BLAST on NCBI transcript from alignment at sc0000144:68426..74454- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00012441 ID=TCONS_00012441|Name=TCONS_00012441|organism=Clytia hemisphaerica|type=transcript|length=6029bp|location=Sequence derived from alignment at sc0000144:68426..74454- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00012441 vs. Swiss-Prot (Human)
Match: ZN420 (Zinc finger protein 420 OS=Homo sapiens GN=ZNF420 PE=1 SV=1) HSP 1 Score: 295.434 bits (755), Expect = 2.514e-85 Identity = 172/479 (35.91%), Postives = 243/479 (50.73%), Query Frame = 1
Query: 2398 FQCVQCLIYFPEHQLLIQHSETHKTAPKKPYMCNLCSKDFDECTELKMHMSEHSTTGKKPFRCGICGRCYSIPEVLERHLEIHLDDQSFVCTVCEKKFLRLQTYEKHILTHKSLQKLFLCEVCDKKFTKAENFEKHIRTHISDTTQETLQCGNCREFVKDPGVLIRHSRSHIGANCYKCKLCDEDFANGDEFEDHV----------CPYNDVATDEGQKIDFSPQLNTEEKSHNCDVCDEEFTNLGALQKHGLSHT-DKIYDCKFCNKKFADMVNMERHSLTHAGEKPYLCDYCGVTFAESAELQKHVRQHTGIKSFECKKCLGTFSTSANYKRHS---CKDRQHKCDTCGKGFSNGSNLLIHTRIHTGEKPYSCEYCEKRFNNIYHMRTHTRTHTGEKPYKCDHCTKTFGHPSNLQRHQRFHTGEKPYKCTHCERGFVATNDLKRHIRIHTGEKPFHCDVCGKSFTNSSNFQRHHQRH 3792
+ C +C F + LI H H +KPY C C K F ++L H H TG+KP+ C CG+ ++ L H +H ++ + C C K F +L H H +K + C+ C K F +H + H + E +CG R F++ +L++H R H G YKC+ C + F G + H C G ++ +++T EK + C C + F L +H HT +K Y+CK C K F+ + +H H GEKPY C CG +F ++L +H R HTG K +ECK+C F+ S++ +H ++ + C+ CGK F+ G L+ H RIHTGEKPY C+ C K F + H R HTGEKPY+C C K F H S L HQR HTGEKPY+C C + F ++ L RH RIHTGEKP+ C CGK+FT S +H + H
Sbjct: 195 YACKECGKAFTQSSQLILHHRIH--TGEKPYKCEECGKAFIRSSQLTRHQKVH--TGEKPYECKECGKAFTQNSQLTLHQRLHTGEKLYECKECRKVFTQLSQLILHKRIHTG-EKPYECKECGKAFICGSQLSQHQKIHNGEKPYECKECG--RAFIRGS-LLMQHQRIHTGEKPYKCEECGKAFIRGSQLTQHQRIHTNEKPYECKECGKMFSHGSQLTQHQRIHTGEKPYQCKECGKAFNRGSLLTRHQRIHTGEKPYECKECGKTFSRGSELTQHERIHTGEKPYECKECGKSFIRGSQLTQHQRIHTGEKPYECKECRMAFTQSSHLSQHQRLHTGEKPYVCNECGKAFARGLLLIQHQRIHTGEKPYQCKECGKAFIRGSQLTQHQRIHTGEKPYECKECGKAFSHGSQLTLHQRIHTGEKPYECRECRKAFTQSSHLSRHQRIHTGEKPYQCKECGKAFTRGSQLTQHQRIH 665 HSP 2 Score: 294.278 bits (752), Expect = 5.857e-85 Identity = 175/486 (36.01%), Postives = 243/486 (50.00%), Query Frame = 1
Query: 2398 FQCVQCLIYFPEHQLLIQHSETHKTAPKKPYMCNLCSKDFDECTELKMHMSEHSTTGKKPFRCGICGRCYSIPEVLERHLEIHLDDQSFVCTVCEKKFLRLQTYEKHILTHKSLQKLFLCEVCDKKFTKAENFEKHIRTHISDTTQETLQCGNCREFVKDPGVLIRHSRSHIGANCYKCKLCDEDFANGDEFEDHVCPYN----------DVATDEGQKIDFSPQLNTEEKSHNCDVCDEEFTNLGALQKHGLSHT-DKIYDCKFCNKKFADMVNMERHSLTHAGEKPYLCDYCGVTFAESAELQKHVRQHTGIKSFECKKCLGTFSTSANYKRHS---CKDRQHKCDTCGKGFSNGSNLLIHTRIHTGEKPYSCEYCEKRFNNIYHMRTHTRTHTGEKPYKCDHCTKTFGHPSNLQRHQRFHTGEKPYKCTHCERGFVATNDLKRHIRIHTGEKPFHCDVCGKSFTNSSNFQRHHQRHRPKDKHE 3813
++C +C F L QH H +KPY C C K F ++L +H H TG+KP+ C CG+ ++ L H IH ++ + C C K F+R +H H +K + C+ C K FT+ H R H T ++ +C CR+ LI H R H G Y+CK C + F G + H +N A G + +++T EK + C+ C + F L +H HT +K Y+CK C K F+ + +H H GEKPY C CG F + L +H R HTG K +ECK+C TFS + +H ++ ++C CGK F GS L H RIHTGEKPY C+ C F H+ H R HTGEKPY C+ C K F L +HQR HTGEKPY+C C + F+ + L +H RIHTGEKP+ C CGK+F++ S H + H + +E
Sbjct: 139 YKCKECGKAFRRASHLTQHQSIH--TGEKPYECKQCGKAFSRDSQLSLHQRLH--TGEKPYACKECGKAFTQSSQLILHHRIHTGEKPYKCEECGKAFIRSSQLTRHQKVHTG-EKPYECKECGKAFTQNSQLTLHQRLH---TGEKLYECKECRKVFTQLSQLILHKRIHTGEKPYECKECGKAFICGSQLSQHQKIHNGEKPYECKECGRAFIRGSLLMQHQRIHTGEKPYKCEECGKAFIRGSQLTQHQRIHTNEKPYECKECGKMFSHGSQLTQHQRIHTGEKPYQCKECGKAFNRGSLLTRHQRIHTGEKPYECKECGKTFSRGSELTQHERIHTGEKPYECKECGKSFIRGSQLTQHQRIHTGEKPYECKECRMAFTQSSHLSQHQRLHTGEKPYVCNECGKAFARGLLLIQHQRIHTGEKPYQCKECGKAFIRGSQLTQHQRIHTGEKPYECKECGKAFSHGSQLTLHQRIHTGEKPYE 616 HSP 3 Score: 261.151 bits (666), Expect = 2.345e-73 Identity = 158/430 (36.74%), Postives = 220/430 (51.16%), Query Frame = 1
Query: 2515 FDECTELKMHMSEHSTTGKKPFRCGICGRCYSIPEVLERHLEIHLDDQSFVCTVCEKKFLRLQTYEKHILTHKSLQKLFLCEVCDKKFTKAENFEKHIRTHISDTTQETLQCGNCREFVKDPGVLIRHSRSHIGANCYKCKLCDEDFANGDEFEDHVCPYNDVATDEGQKIDFSPQLNTEEKSHNCDVCDEEFTNLGALQKHGLSHT-DKIYDCKFCNKKFADMVNMERHSLTHAGEKPYLCDYCGVTFAESAELQKHVRQHTGIKSFECKKCLGTFSTSANYKRHS---CKDRQHKCDTCGKGFSNGSNLLIHTRIHTGEKPYSCEYCEKRFNNIYHMRTHTRTHTGEKPYKCDHCTKTFGHPSNLQRHQRFHTGEKPYKCTHCERGFVATNDLKRHIRIHTGEKPFHCDVCGKSFTNSSNFQRHHQRH 3792
F++ T L H HST +KP++C CG+ + L +H IH ++ + C C K F R H H +K + C+ C K FT++ H R H + + +CG + F++ L RH + H G Y+CK C + F + H +L+T EK + C C + FT L L H HT +K Y+CK C K F + +H H GEKPY C CG F + L +H R HTG K ++C++C F + +H ++ ++C CGK FS+GS L H RIHTGEKPY C+ C K FN + H R HTGEKPY+C C KTF S L +H+R HTGEKPY+C C + F+ + L +H RIHTGEKP+ C C +FT SS+ +H + H
Sbjct: 120 FNQHTYLSQHSRCHST--EKPYKCKECGKAFRRASHLTQHQSIHTGEKPYECKQCGKAFSRDSQLSLHQRLHTG-EKPYACKECGKAFTQSSQLILHHRIHTGEKPYKCEECG--KAFIRS-SQLTRHQKVHTGEKPYECKECGKAFTQNSQLTLH------------------QRLHTGEKLYECKECRKVFTQLSQLILHKRIHTGEKPYECKECGKAFICGSQLSQHQKIHNGEKPYECKECGRAFIRGSLLMQHQRIHTGEKPYKCEECGKAFIRGSQLTQHQRIHTNEKPYECKECGKMFSHGSQLTQHQRIHTGEKPYQCKECGKAFNRGSLLTRHQRIHTGEKPYECKECGKTFSRGSELTQHERIHTGEKPYECKECGKSFIRGSQLTQHQRIHTGEKPYECKECRMAFTQSSHLSQHQRLH 525 HSP 4 Score: 227.639 bits (579), Expect = 4.313e-62 Identity = 153/456 (33.55%), Postives = 210/456 (46.05%), Query Frame = 1
Query: 2494 CNLCSKDFDECTELKMHMSEHSTTGKKPFRCGIC----GRCYSIPEVLERHLEIHLDDQSFVCTVCEKKFLRLQTYEKHILTHKSL---QKLFLCEVCDKKFTKAENFEKHIRTHISDTTQETLQCGNCREFVKDPGVLIRHSRSHIGANCYKCKLCDEDFANGDEFEDHVCPYNDVATDEGQKIDFSPQLNTEEKSHNCDVCDEEFTNLGALQKHGLSHT-DKIYDCKFCNKKFADMVNMERHSLTHAGEKPYLCDYCGVTFAESAELQKHVRQHTGIKSFECKKCLGTFSTSANYKRHSCKDRQHKCDTCGKGFSNGSNLLIHTRIHTGEKPYSCEYCEKRFNNIYHMRTHTRTHTGEKPYKCDHCTKTFGHPSNLQRHQRFHTGEKPYKCTHCERGFVATNDLKRHIRIHTGEKPFHCDVCGKSFTNSSNFQRHHQRHRPKDKHEPKPSSQSV 3837
C+L + + E K M + K+ FR G+ ++ L +H H ++ + C C K F R H+ H+S+ +K + C+ C K F++ H R H T ++ C C + LI H R H G YKC+ C + F + H QK+ +T EK + C C + FT L H HT +K+Y+CK C K F + + H H GEKPY C CG F ++L +H + H G K +ECK+C G+ F GS L+ H RIHTGEKPY CE C K F + H R HT EKPY+C C K F H S L +HQR HTGEKPY+C C + F + L RH RIHTGEKP+ C CGK+F+ S +H + H + +E K +S
Sbjct: 79 CDLEESNSRDYLEAKGKMEKQQENQKEYFRQGMIIYDKMSIFNQHTYLSQHSRCHSTEKPYKCKECGKAFRRA----SHLTQHQSIHTGEKPYECKQCGKAFSRDSQLSLHQRLH---TGEKPYACKECGKAFTQSSQLILHHRIHTGEKPYKCEECGKAFIRSSQLTRH------------QKV------HTGEKPYECKECGKAFTQNSQLTLHQRLHTGEKLYECKECRKVFTQLSQLILHKRIHTGEKPYECKECGKAFICGSQLSQHQKIHNGEKPYECKEC-------------------------GRAFIRGSLLMQHQRIHTGEKPYKCEECGKAFIRGSQLTQHQRIHTNEKPYECKECGKMFSHGSQLTQHQRIHTGEKPYQCKECGKAFNRGSLLTRHQRIHTGEKPYECKECGKTFSRGSELTQHERIHTGEKPYECKECGKSF 484 HSP 5 Score: 209.92 bits (533), Expect = 3.537e-56 Identity = 136/417 (32.61%), Postives = 196/417 (47.00%), Query Frame = 1
Query: 2395 LFQCVQCLIYFPEHQLLIQHSETHKTAPKKPYMCNLCSKDFDECTELKMHMSEHSTTGKKPFRCGICGRCYSIPEVLERHLEIHLDDQSFVCTVCEKKFLRLQTYEKHILTHKSLQKLFLCEVCDKKFTKAENFEKHIRTHISDTTQETLQCGNCREFVKDPGVLIRHSRSHIGANCYKCKLCDEDFANGDEFEDHV----------CPYNDVATDEGQKIDFSPQLNTEEKSHNCDVCDEEFTNLGALQKHGLSHT-DKIYDCKFCNKKFADMVNMERHSLTHAGEKPYLCDYCGVTFAESAELQKHVRQHTGIKSFECKKCLGTFSTSANYKRHS---CKDRQHKCDTCGKGFSNGSNLLIHTRIHTGEKPYSCEYCEKRFNNIYHMRTHTRTHTGEKPYKCDHCTKTFGHPSNL 3603
L++C +C F + LI H H +KPY C C K F ++L H H+ G+KP+ C CGR + +L +H IH ++ + C C K F+R +H H + +K + C+ C K F+ +H R H T ++ QC C + +L RH R H G Y+CK C + F+ G E H C + G ++ +++T EK + C C FT L +H HT +K Y C C K FA + + +H H GEKPY C CG F ++L +H R HTG K +ECK+C FS + H ++ ++C C K F+ S+L H RIHTGEKPY C+ C K F + H R H EK ++ C F H S +
Sbjct: 278 LYECKECRKVFTQLSQLILHKRIH--TGEKPYECKECGKAFICGSQLSQHQKIHN--GEKPYECKECGRAFIRGSLLMQHQRIHTGEKPYKCEECGKAFIRGSQLTQHQRIHTN-EKPYECKECGKMFSHGSQLTQHQRIH---TGEKPYQCKECGKAFNRGSLLTRHQRIHTGEKPYECKECGKTFSRGSELTQHERIHTGEKPYECKECGKSFIRGSQLTQHQRIHTGEKPYECKECRMAFTQSSHLSQHQRLHTGEKPYVCNECGKAFARGLLLIQHQRIHTGEKPYQCKECGKAFIRGSQLTQHQRIHTGEKPYECKECGKAFSHGSQLTLHQRIHTGEKPYECRECRKAFTQSSHLSRHQRIHTGEKPYQCKECGKAFTRGSQLTQHQRIHISEKSFEYKECGIDFSHGSQV 686 HSP 6 Score: 147.517 bits (371), Expect = 2.949e-36 Identity = 94/277 (33.94%), Postives = 138/277 (49.82%), Query Frame = 1
Query: 2992 YNDVATDEGQKIDFSPQ----LNTEEKSHNCDVCDEEFTNLGAL------QKHGLSHTDKIYDCKFCNKKFADMVNMERHSLTHAGEKPYLCDYCGVTFAESAELQKHVRQHTGIKSFECKKCLGTFSTSANYKRHSCKDRQHKCDTCGKGFSNGSNLLIHTRIHTGEKPYSCEYCEKRFNNIYHMRTHTRTHTGEKPYKCDHCTKTFGHPSNLQRHQRFHTGEKPYKCTHCERGFVATNDLKRHIRIHTGEKPFHCDVCGKSFTNSSNFQRHHQRH 3792
+ DVA IDFS + L++ ++ DV E ++NL +L LS Y+ + + +D +E L + + YL + G + +++ RQ G+ ++ + + + R ++ +KC CGK F S+L H IHTGEKPY C+ C K F+ + H R HTGEKPY C C K F S L H R HTGEKPYKC C + F+ ++ L RH ++HTGEKP+ C CGK+FT +S H + H
Sbjct: 8 FRDVA------IDFSQEEWECLDSAQRDLYRDVMLENYSNLVSLDLPSRCASKDLSPEKNTYETELSQWEMSD--RLENCDLEESNSRDYL-EAKGKMEKQQENQKEYFRQ--GMIIYDKMSIFNQHTYLSQHSRCHSTEKPYKCKECGKAFRRASHLTQHQSIHTGEKPYECKQCGKAFSRDSQLSLHQRLHTGEKPYACKECGKAFTQSSQLILHHRIHTGEKPYKCEECGKAFIRSSQLTRHQKVHTGEKPYECKECGKAFTQNSQLTLHQRLH 273 The following BLAST results are available for this feature:
BLAST of TCONS_00012441 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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