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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012438 ID=TCONS_00012438|Name=TCONS_00012438|organism=Clytia hemisphaerica|type=transcript|length=2486bp
TTCTTCCAAACGTTCAAGATCGTTTGAAAGCTCAGAGATAAGTTCCCCGG
AGTCTATGTGAAATCATAACAGAAATTTTCAGTAATTATTACCTGTCGTC
TTATTTATCTATTTCCAGtaaaagtatcaaaatattAAAGATTGTTTAAA
AATCTCACGATGGAAGCGGCAGAAGGCTTTATTGGTTACTACGTTTCTCT
ACAATGCGATAACGATTCCACTTATGAAGGTGAAGTCAAATCCATTGATC
CTGAACGCCAATTGATCACCCTTACACACGCCCATCAAATGACGGCGGAT
GGGCGGGACATGAAGTTTCCACAGATCACTTTGACAGGGAACCACGTCAA
TAATTTGAAGATCATccgacaaaagttgaaaataccTGATCTAAACCAAC
ATATTCAAGATCAACAGAAATCAGAGAAGAACAAGAAACGTACCAGTCCA
CCGAACCGCGACCCTGACAACACGTACAACTCTTACAACAACACCAAACC
AGCACAACAGCAACGCAAAAAGAGTGGTACGTTCACCAGTCAAGATGCTT
CGGAGATTTCCATGTTCCCCGACTTCGATTTCCAACAGAACAATGCGCGT
TTCGATAAGCAAGCAGTGTACGAAAAAATGTTGCAAGAAACGGACAGTAT
TCCGAACCCGGCGCCTCTCTATGATCCGAAAATGAGAAGTCAAGACAACA
TTTTAGAAAGTGAACCGGTTTCGTTACGCCAGATTCAAGTTCCGTTAGAA
CACGCTGGTAAAGAATTTGCAACGGAAGATGGTTTCATCATCCCTGCTAT
TACGTTATCGCTGAAAATGAAACTGTACGCAGCTGCTGAAAAAGCAGGAC
TTTCCATTCACCAGTTAGTTGAAACCTCCGGTATCTGTGTGTCACAAATG
GCTATTCAACTGGTCGGTGGTGCTTTGCGTTTGAATCCCAAGAACAGTCA
CCAGAGACCCGAAATTGTCGTGTTAGCTGGATGCCACACGCAGGGTCTAC
AAGCCATTTGTACTGCACGTCACTTAGCAAATCATCGTTGCAAAGTGGTC
CTCTATTTCCCTAACTCCTCACCAGAGTTGCAACCTCAAATCAATCTTTT
CCAATCAGCTGGCGGAAAGATCATCAAATCGACCAGGGAACTTCCCTCGC
AACCAGTCGATATGATCATCGATGCAATGGTGGGACACGAGAACCATCAA
CCTACACCGTGGCTTCCCTACGCCGTGTCATGGgcgaaccaaaacaaagc
accGGTAATGTCTATCGATCCTTGCATACCAAACTCTAAAGTAGATCTTC
CAAATATCAAATGGGCCATCTCGTTAGGTTTACCGTTAATAAAATCACCA
ACTCCGGGCCGTTTGTATCTGGCAGATTTGGGCATACCTCGCGGTGTTTT
CAGAGATGCTGGTATTCAATATGTTTCACCTTTCAAAGATAAATTTTGCA
TTCCTCTTTATGAATCTTAACTTGGTGTATAGTGTTCTTTGATTATTTCT
TTGTGTGCATCATTCatgattttttgatattttattttctgtagGCTTCG
TTATGTTAATTACGACGTTTTAAAACGCTATCGAGTTAAACAATACCTTG
AATATCTCGTGTTTTCTTAAGTCaatttaaagtgattttttttgaaggTT
TTGAGTTCTCTGAGAATGTTTCCTTCTTTGAGTTTCGTGttctacttttt
tgttttctttggtcATCTACGACATGATACCTAGAAATTTTAATCGATAT
TTTATAAAGTTCTATTTATTTCCAACATTTTCCAGTTTTATAAACTTAGT
TCTACCATATTGACCAACGGTCTCTCCCCATTGGAGGTGTATAAATGGTT
TTGTCTTCGACACAGGCTTTACTCGAGTCGAAAAGCATCATTTGGCGACG
CGATCTCTTAATCATATAAGAAATAAGGGGAGAATACAATCTCGTTTTGT
AGGGAGTCTAGTCTAGCTCCAGTATTCTTATGCTATCAGTGAATTCATTC
ACGTTCAAATTTCACTGCATGCTTATGCTATGTGATATGTGAGCTTTTCG
GGTGCTTGAAATTAAAACGTTTATCAACATCAATACAATTTAAATCTTGT
TGAACGTCTATGTTGACAAAAAGATCTACTTTCACCCGAGTTCAGTAAAA
TAATTCACGTACTGAACctttataaagttttaaaatttcgaTTGCAATAC
AGTAATatcacacgttttttttatcagAATACCTAAAatgcctggatgtg
cttatatTTTTAGCAACTTTcagcttaaaatgttcttaaatgcgttctta
atttttcagactactcttaatcgacaatatcatgcgaaataaagagcact
taaaattgataaaatttggATAATATTTGAAtaacaatgggcttttccag
aaaaaatttgaatcccATTTGGAGGAATATGAGGttgaggatataacaat
tttgatttacgcccggacaacgggttttaccccccg Run BLAST on NCBI protein sequence of TCONS_00012438-protein >TCONS_00012438-protein ID=TCONS_00012438-protein|Name=TCONS_00012438-protein|organism=Clytia hemisphaerica|type=polypeptide|length=436bp
MEAAEGFIGYYVSLQCDNDSTYEGEVKSIDPERQLITLTHAHQMTADGRD
MKFPQITLTGNHVNNLKIIRQKLKIPDLNQHIQDQQKSEKNKKRTSPPNR
DPDNTYNSYNNTKPAQQQRKKSGTFTSQDASEISMFPDFDFQQNNARFDK
QAVYEKMLQETDSIPNPAPLYDPKMRSQDNILESEPVSLRQIQVPLEHAG
KEFATEDGFIIPAITLSLKMKLYAAAEKAGLSIHQLVETSGICVSQMAIQ
LVGGALRLNPKNSHQRPEIVVLAGCHTQGLQAICTARHLANHRCKVVLYF
PNSSPELQPQINLFQSAGGKIIKSTRELPSQPVDMIIDAMVGHENHQPTP
WLPYAVSWANQNKAPVMSIDPCIPNSKVDLPNIKWAISLGLPLIKSPTPG
RLYLADLGIPRGVFRDAGIQYVSPFKDKFCIPLYES Run BLAST on NCBI transcript from alignment at sc0000144:63217..66386- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012438 ID=TCONS_00012438|Name=TCONS_00012438|organism=Clytia hemisphaerica|type=transcript|length=3170bp|location=Sequence derived from alignment at sc0000144:63217..66386- (Clytia hemisphaerica)
TTCTTCCAAACGTTCAAGATCGTTTGAAAGCTCAGAGATAAGTTCCCCGG
AGTCTATGTGAAATCATAACAGAAATTTTCAGTAATTATTACCTGTCGTC
TTATTTATCTATTTCCAGTAAAAGTATCAAAATATTAAAGATTGTTTAAA
AATCTCACGATGGAAGCGGCAGAAGGCTTTATTGGTTACTACGTTTCTCT
ACAATGCGATAACGATTCCACTTATGAAGGTGAAGTCAAATCCATTGATC
CTGAACGCCAATTGATCACCCTTACACACGCCCATCAAATGACGGCGGAT
GGGCGGGACATGAAGTTTCCACAGATCACTTTGACAGGGAACCACGTCAA
TAATTTGAAGATCATCCGACAAAAGTTGAAAATACCTGATCTAAACCAAC
ATATTCAAGATCAACAGGTAAGCTTTCTTTCTTTCTCATGGCCAGCTTTC
TGAAGGGCATAGGCTGAAATTCAGCAAATTAATGGAGTTAACTGAGGGGT
GCCTTACTTGGAAGTATATGTATACGTTGTCTTTAAAAGACCTAAAGTTT
TGCGGTGCAACTAAATATCTGAAGGAGTTGAAACCCTGAAAGGGTTATCC
ACGGGACGTTTAAAGCCTTGAAAACCTTGACGAGCTTTCATATCATTTTT
GTCCTGTTTCGATTCGGCTTGTTAATTGCAGTCTGTCTGGATTGTATTTG
TAAATATTTTAATGTTCAACTCGCTCTCGCTCTCTAGCAACCAAGTTGTC
ATTTATTTCAGTTTGGTCTCGGTAAAACCATTGATTTTCATTTAAAAACA
GTTAAAGATATAAAAGTCTTAAAAAAAACAGAATAAAATTTAGGCATTCT
GTGCTTTTTCTGACCTTTTCTGAATTTCCATCATAATGCCTTACGCTGAA
AGATGATAGAAAAAGTAATAAAAAATGTGTGTACTTTATGTGTTATGAGT
ATTACCCCTTTTGAAATTCAGGAATTTCCTGAGTTTTCGACTTGATATTT
TGACCAGTAATAGTTATTGGCAATCTCATACTGTGTGCAAAACTTCAACT
GCCAAAGCATGTTACAAAGGAATTTAATTTATCCAATTTCTTAACGTTTA
GAAATCAGAGAAGAACAAGAAACGTACCAGTCCACCGAACCGCGACCCTG
ACAACACGTACAACTCTTACAACAACACCAAACCAGCACAACAGCAACGC
AAAAAGAGTGGTACGTTCACCAGTCAAGATGCTTCGGAGATTTCCATGTT
CCCCGACTTCGATTTCCAACAGAACAATGCGCGTTTCGATAAGCAAGCAG
TGTACGAAAAAATGTTGCAAGAAACGGACAGTATTCCGAACCCGGCGCCT
CTCTATGATCCGAAAATGAGAAGTCAAGACAACATTTTAGAAAGTGAACC
GGTTTCGTTACGCCAGATTCAAGTTCCGTTAGAACACGCTGGTAAAGAAT
TTGCAACGGAAGATGGTTTCATCATCCCTGCTATTACGTTATCGCTGAAA
ATGAAACTGTACGCAGCTGCTGAAAAAGCAGGACTTTCCATTCACCAGTT
AGTTGAAACCTCCGGTATCTGTGTGTCACAAATGGCTATTCAACTGGTCG
GTGGTGCTTTGCGTTTGAATCCCAAGAACAGTCACCAGAGACCCGAAATT
GTCGTGTTAGCTGGATGCCACACGCAGGGTCTACAAGCCATTTGTACTGC
ACGTCACTTAGCAAATCATCGTTGCAAAGTGGTCCTCTATTTCCCTAACT
CCTCACCAGAGTTGCAACCTCAAATCAATCTTTTCCAATCAGCTGGCGGA
AAGATCATCAAATCGACCAGGGAACTTCCCTCGCAACCAGTCGATATGAT
CATCGATGCAATGGTGGGACACGAGAACCATCAACCTACACCGTGGCTTC
CCTACGCCGTGTCATGGGCGAACCAAAACAAAGCACCGGTAATGTCTATC
GATCCTTGCATACCAAACTCTAAAGTAGATCTTCCAAATATCAAATGGGC
CATCTCGTTAGGTTTACCGTTAATAAAATCACCAACTCCGGGCCGTTTGT
ATCTGGCAGATTTGGGCATACCTCGCGGTGTTTTCAGAGATGCTGGTATT
CAATATGTTTCACCTTTCAAAGATAAATTTTGCATTCCTCTTTATGAATC
TTAACTTGGTGTATAGTGTTCTTTGATTATTTCTTTGTGTGCATCATTCA
TGATTTTTTGATATTTTATTTTCTGTAGGCTTCGTTATGTTAATTACGAC
GTTTTAAAACGCTATCGAGTTAAACAATACCTTGAATATCTCGTGTTTTC
TTAAGTCAATTTAAAGTGATTTTTTTTGAAGGTTTTGAGTTCTCTGAGAA
TGTTTCCTTCTTTGAGTTTCGTGTTCTACTTTTTTGTTTTCTTTGGTCAT
CTACGACATGATACCTAGAAATTTTAATCGATATTTTATAAAGTTCTATT
TATTTCCAACATTTTCCAGTTTTATAAACTTAGTTCTACCATATTGACCA
ACGGTCTCTCCCCATTGGAGGTGTATAAATGGTTTTGTCTTCGACACAGG
CTTTACTCGAGTCGAAAAGCATCATTTGGCGACGCGATCTCTTAATCATA
TAAGAAATAAGGGGAGAATACAATCTCGTTTTGTAGGGAGTCTAGTCTAG
CTCCAGTATTCTTATGCTATCAGTGAATTCATTCACGTTCAAATTTCACT
GCATGCTTATGCTATGTGATATGTGAGCTTTTCGGGTGCTTGAAATTAAA
ACGTTTATCAACATCAATACAATTTAAATCTTGTTGAACGTCTATGTTGA
CAAAAAGATCTACTTTCACCCGAGTTCAGTAAAATAATTCACGTACTGAA
CCTTTATAAAGTTTTAAAATTTCGATTGCAATACAGTAATATCACACGTT
TTTTTTATCAGAATACCTAAAATGCCTGGATGTGCTTATATTTTTAGCAA
CTTTCAGCTTAAAATGTTCTTAAATGCGTTCTTAATTTTTCAGACTACTC
TTAATCGACAATATCATGCGAAATAAAGAGCACTTAAAATTGATAAAATT
TGGATAATATTTGAATAACAATGGGCTTTTCCAGAAAAAATTTGAATCCC
ATTTGGAGGAATATGAGGTTGAGGATATAACAATTTTGATTTACGCCCGG
ACAACGGGTTTTACCCCCCG Coding sequence (CDS) from alignment at sc0000144:63217..66386- >TCONS_00012438 ID=TCONS_00012438|Name=TCONS_00012438|organism=Clytia hemisphaerica|type=CDS|length=2622bp|location=Sequence derived from alignment at sc0000144:63217..66386- (Clytia hemisphaerica)
AAATCAGAGAAGAACAAGAAACGTACCAGTCCACCGAACCGCGACCCTGA
CAACACGTACAACTCTTACAACAACACCAAACCAGCACAACAGCAACGCA
AAAAGAGTGGTACGTTCACCAGTCAAGATGCTTCGGAGATTTCCATGTTC
CCCGACTTCGATTTCCAACAGAACAATGCGCGTTTCGATAAGCAAGCAGT
GTACGAAAAAATGTTGCAAGAAACGGACAGTATTCCGAACCCGGCGCCTC
TCTATGATCCGAAAATGAGAAGTCAAGACAACATTTTAGAAAGTGAACCG
GTTTCGTTACGCCAGATTCAAGTTCCGTTAGAACACGCTGGTAAAGAATT
TGCAACGGAAGATGGTTTCATCATCCCTGCTATTACGTTATCGCTGAAAA
TGAAACTGTACGCAGCTGCTGAAAAAGCAGGACTTTCCATTCACCAGTTA
GTTGAAACCTCCGGTATCTGTGTGTCACAAATGGCTATTCAACTGGTCGG
TGGTGCTTTGCGTTTGAATCCCAAGAACAGTCACCAGAGACCCGAAATTG
TCGTGTTAGCTGGATGCCACACGCAGGGTCTACAAGCCATTTGTACTGCA
CGTCACTTAGCAAATCATCGTTGCAAAGTGGTCCTCTATTTCCCTAACTC
CTCACCAGAGTTGCAACCTCAAATCAATCTTTTCCAATCAGCTGGCGGAA
AGATCATCAAATCGACCAGGGAACTTCCCTCGCAACCAGTCGATATGATC
ATCGATGCAATGGTGGGACACGAGAACCATCAACCTACACCGTGGCTTCC
CTACGCCGTGTCATGGGCGAACCAAAACAAAGCACCGGTAATGTCTATCG
ATCCTTGCATACCAAACTCTAAAGTAGATCTTCCAAATATCAAATGGGCC
ATCTCGTTAGGTTTACCGTTAATAAAATCACCAACTCCGGGCCGTTTGTA
TCTGGCAGATTTGGGCATACCTCGCGGTGTTTTCAGAGATGCTGGTATTC
AATATGTTTCACCTTTCAAAGATAAATTTTGCATTCCTCTTTATGAATCT
TAAATGGAAGCGGCAGAAGGCTTTATTGGTTACTACGTTTCTCTACAATG
CGATAACGATTCCACTTATGAAGGTGAAGTCAAATCCATTGATCCTGAAC
GCCAATTGATCACCCTTACACACGCCCATCAAATGACGGCGGATGGGCGG
GACATGAAGTTTCCACAGATCACTTTGACAGGGAACCACGTCAATAATTT
GAAGATCATCCGACAAAAGTTGAAAATACCTGATCTAAACCAACATATTC
AAGATCAACAGAAATCAGAGAAGAACAAGAAACGTACCAGTCCACCGAAC
CGCGACCCTGACAACACGTACAACTCTTACAACAACACCAAACCAGCACA
ACAGCAACGCAAAAAGAGTGGTACGTTCACCAGTCAAGATGCTTCGGAGA
TTTCCATGTTCCCCGACTTCGATTTCCAACAGAACAATGCGCGTTTCGAT
AAGCAAGCAGTGTACGAAAAAATGTTGCAAGAAACGGACAGTATTCCGAA
CCCGGCGCCTCTCTATGATCCGAAAATGAGAAGTCAAGACAACATTTTAG
AAAGTGAACCGGTTTCGTTACGCCAGATTCAAGTTCCGTTAGAACACGCT
GGTAAAGAATTTGCAACGGAAGATGGTTTCATCATCCCTGCTATTACGTT
ATCGCTGAAAATGAAACTGTACGCAGCTGCTGAAAAAGCAGGACTTTCCA
TTCACCAGTTAGTTGAAACCTCCGGTATCTGTGTGTCACAAATGGCTATT
CAACTGGTCGGTGGTGCTTTGCGTTTGAATCCCAAGAACAGTCACCAGAG
ACCCGAAATTGTCGTGTTAGCTGGATGCCACACGCAGGGTCTACAAGCCA
TTTGTACTGCACGTCACTTAGCAAATCATCGTTGCAAAGTGGTCCTCTAT
TTCCCTAACTCCTCACCAGAGTTGCAACCTCAAATCAATCTTTTCCAATC
AGCTGGCGGAAAGATCATCAAATCGACCAGGGAACTTCCCTCGCAACCAG
TCGATATGATCATCGATGCAATGGTGGGACACGAGAACCATCAACCTACA
CCGTGGCTTCCCTACGCCGTGTCATGGGCGAACCAAAACAAAGCACCGGT
AATGTCTATCGATCCTTGCATACCAAACTCTAAAGTAGATCTTCCAAATA
TCAAATGGGCCATCTCGTTAGGTTTACCGTTAATAAAATCACCAACTCCG
GGCCGTTTGTATCTGGCAGATTTGGGCATACCTCGCGGTGTTTTCAGAGA
TGCTGGTATTCAATATGTTTCACCTTTCAAAGATAAATTTTGCATTCCTC
TTTATGAATCTTAAATGGAAGCGGCAGAAGGCTTTATTGGTTACTACGTT
TCTCTACAATGCGATAACGATTCCACTTATGAAGGTGAAGTCAAATCCAT
TGATCCTGAACGCCAATTGATCACCCTTACACACGCCCATCAAATGACGG
CGGATGGGCGGGACATGAAGTTTCCACAGATCACTTTGACAGGGAACCAC
GTCAATAATTTGAAGATCATCCGACAAAAGTTGAAAATACCTGATCTAAA
CCAACATATTCAAGATCAACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012438-exon-sc0000144-1575043694:65970..66386 | TCONS_00012438-exon-sc0000144-1575043694:65970..66386 | Clytia hemisphaerica | exon |
| TCONS_00012438-exon-sc0000144-1575043694:63217..65285 | TCONS_00012438-exon-sc0000144-1575043694:63217..65285 | Clytia hemisphaerica | exon |
| TCONS_00012438-exon-sc0000144-1510915933:65970..66386 | TCONS_00012438-exon-sc0000144-1510915933:65970..66386 | Clytia hemisphaerica | exon |
| TCONS_00012438-exon-sc0000144-1510915933:63217..65285 | TCONS_00012438-exon-sc0000144-1510915933:63217..65285 | Clytia hemisphaerica | exon |
| TCONS_00012438-exon-sc0000144-1491911889:65970..66386 | TCONS_00012438-exon-sc0000144-1491911889:65970..66386 | Clytia hemisphaerica | exon |
| TCONS_00012438-exon-sc0000144-1491911889:63217..65285 | TCONS_00012438-exon-sc0000144-1491911889:63217..65285 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000144 | supercontig | sc0000144:63217..66386 - |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00012438 vs. Swiss-Prot (Human)
Match: EDC3 (Enhancer of mRNA-decapping protein 3 OS=Homo sapiens GN=EDC3 PE=1 SV=1) HSP 1 Score: 254.218 bits (648), Expect = 2.736e-74 Identity = 149/374 (39.84%), Postives = 223/374 (59.63%), Query Frame = 1
Query: 391 LNQHIQDQQKSEKNKKR---TSPPNRDPDNTYNSYNNTKPAQQQRKKSGTFTSQDASEISMFPDFDFQQNNARFDKQAVYEKM-------LQETDSIPNPAPLYDPKMRSQDNILESEPVSLRQIQVPLEHAGKEFATEDGFIIPAITLSLKMKLYAAAEKAGLSIHQLVETSGICVSQMAIQLVGGALRLNPKNSHQRPEIVVLAGCHTQGLQAICTARHLANHRCKVVLYFPNSSPELQP---QINLFQSAGGKIIKSTRELPSQPVDMIIDAMVGHEN--HQPTPWLPYAVSWANQNKAPVMSIDPCIPNSKVDLPNIKWAISLGLPLIKSPTPGRLYLADLGIPRGVFRDAGIQYVSPFKDKFCIPLYES 1467
+++H++ +S+ ++R S +R P+ + K Q + K F D EI DFDF+ N A FDK AV+E++ + IPN P + R +NILESEP+ R+I VP + KEF T+ G ++P+I+ L KL + AEK GL++ + +E +G+C SQMA+ L+GG RLNPKN HQRP + +L G H +G Q I RHLANH +V+L+ PN L+ +++LF G+ + S ++LP+ PVD++I+ + EN + PW AV+WANQN+APV+SIDP + + + + KW+++LGLPL GR+YL D+GIP+ VF++ GI Y SPF KF IPL+ +
Sbjct: 142 VDRHMESLSQSKSFRRRHNSWSSSSRHPNQATPKKSGLKNGQMKNKDDECF-GDDIEEIPD-TDFDFEGNLALFDKAAVFEEIDTYERRSGTRSRGIPNERPT---RYRHDENILESEPIVYRRIIVP-HNVSKEFCTDSGLVVPSISYELHKKLLSVAEKHGLTLERRLEMTGVCASQMALTLLGGPNRLNPKNVHQRPTVALLCGPHVKGAQGISCGRHLANHDVQVILFLPNFVKMLESITNELSLFSKTQGQQVSSLKDLPTSPVDLVINCLDCPENVFLRDQPWYKAAVAWANQNRAPVLSIDPPVHEVEQGI-DAKWSLALGLPLPLGEHAGRIYLCDIGIPQQVFQEVGINYHSPFGCKFVIPLHSA 508
The following BLAST results are available for this feature:
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