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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012431 ID=TCONS_00012431|Name=TCONS_00012431|organism=Clytia hemisphaerica|type=transcript|length=503bp
aaaaaactgccGTGTTCTTTCTCTATCTTATCATCTCAACACTTTGCCAT
ACTGCTAATGCTAAGCAGAAGAATGATAAATTCGAGAAAGCTAAGCAGGA
CTTGGCAAATTTCTCTAAAAGTAATATTATCAAGGATGGAAAAGCAGCTC
TGAAACATGCTGGGTTACTTCAAGATACTAAGAACTCTGGTGAAGCTGAA
AGTCTTATTGATGGTATCCAGAAAAGCAttgttgagaaatttgaatCATT
TGAATTTGATAAGGAAGAGGTTGGATCAGCTTTGGCATCTGGTGTGTCGA
AAGGTTTCCCTGATTTGGTAAAAGGCTTCCAAACTAAGCAATGGTACTAC
GCATTATCAGgaactttgaagaTCTTGACAGCACTCACCACAGCTGCAGG
ACCTTATGGTGCAATTGCTGCTCCAATACTTAAGTTGTTGACCATCATTT
TGAATATGTATGGAGCACCAGTGCAAGAATCACAAGAAGATATGATTAAA
AGG Run BLAST on NCBI protein sequence of TCONS_00012431-protein >TCONS_00012431-protein ID=TCONS_00012431-protein|Name=TCONS_00012431-protein|organism=Clytia hemisphaerica|type=polypeptide|length=167bp
KTAVFFLYLIISTLCHTANAKQKNDKFEKAKQDLANFSKSNIIKDGKAAL
KHAGLLQDTKNSGEAESLIDGIQKSIVEKFESFEFDKEEVGSALASGVSK
GFPDLVKGFQTKQWYYALSGTLKILTALTTAAGPYGAIAAPILKLLTIIL
NMYGAPVQESQEDMIKR Run BLAST on NCBI transcript from alignment at sc0000144:540793..541929+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012431 ID=TCONS_00012431|Name=TCONS_00012431|organism=Clytia hemisphaerica|type=transcript|length=1137bp|location=Sequence derived from alignment at sc0000144:540793..541929+ (Clytia hemisphaerica)
aaaaaactgccGTGTTCTTTCTCTATCTTATCATCTCAACACTTTGCCAT
ACTGCTAATGCTAAGCAGAAGAATGATAAATTCGAGAAAGCTAAGCAGGA
CTTGGCAAATTTCTCTAAAAGTAATATTATCAAGGATGGAAAAGCAGCTC
TGAAACATGCTGGGTTACTTCAAGATACTAAGAACTCTGGTGAAGCTGAA
AGTCTTATTGATGGTATCCAGAAAAGCAttgttgagaaatttgaatCATT
TGAATTTGATAAGGAAGAGGTTGGATCAGCTTTGGCATCTGGTGTGTCGA
AAGGTTTCCCTGATTTGGTAAAAGGCTTCCAAACTAAGCAATGGTACTAC
GCATTATCAGGTATattaagctctagtttagataGGCTTccgctcatcct
ctagcgaaaaaagtttcttataggaagtatataggtctgcgaatcagact
ttagcttagacggcccacttttcgccctgcctattctaattgtgaattaa
agttgaCTGATAGTTGGCTGTCAATGCATTGttctcttttgacgtcaatg
gaatgtcttctttcaatcttttccaagcaaataTTTTACCTTCCAACTTT
GCGCCCACTTTTGGCCTTACtcaaacaattagaataggcagggcagaaag
tcggccgtctaaactagagctaagttATCATTTGATGACTGAAAAAATTT
ACACCTTAGCTCTTTCTGTACCAAaaggcaaatttttttctttttagcta
aGATTATTTTTTCGTCTATAGTGAGAACCTTTAACAGATTTAGCgctaaa
aaattaacaaagatcaattttttttcaaaaaataagagctaaaaatcttc
aaagtttgTGAACCTACGCAGTACTACAAGAAACTCGACGCCATCCTATT
CGATACAGTACAAATTCTAATTCtacttgaaaatcgaattaaggAACGTC
AGCTGTATTTTAGAttctgtttttatcttttttatcactttcaggaactt
tgaagaTCTTGACAGCACTCACCACAGCTGCAGGACCTTATGGTGCAATT
GCTGCTCCAATACTTAAGTTGTTGACCATCATTTTGAATATGTATGGAGC
ACCAGTGCAAGAATCACAAGAAGATATGATTAAAAGG Coding sequence (CDS) from alignment at sc0000144:540793..541929+ >TCONS_00012431 ID=TCONS_00012431|Name=TCONS_00012431|organism=Clytia hemisphaerica|type=CDS|length=1002bp|location=Sequence derived from alignment at sc0000144:540793..541929+ (Clytia hemisphaerica)
aaaactgccGTGTTCTTTCTCTATCTTATCATCTCAACACTTTGCCATAC
TGCTAATGCTAAGCAGAAGAATGATAAATTCGAGAAAGCTAAGCAGGACT
TGGCAAATTTCTCTAAAAGTAATATTATCAAGGATGGAAAAGCAGCTCTG
AAACATGCTGGGTTACTTCAAGATACTAAGAACTCTGGTGAAGCTGAAAG
TCTTATTGATGGTATCCAGAAAAGCAttgttgagaaatttgaatCATTTG
AATTTGATAAGGAAGAGGTTGGATCAGCTTTGGCATCTGGTGTGTCGAAA
GGTTTCCCTGATTTGGTAAAAGGCTTCCAAACTAAGCAATGGTACTACGC
ATTATCAGgaactttgaagaTCTTGACAGCACTCACCACAGCTGCAGGAC
CTTATGGTGCAATTGCTGCTCCAATACTTAAGTTGTTGACCATCATTTTG
AATATGTATGGAGCACCAGTGCAAGAATCACAAGAAGATATGATTAAAAG
GaaaactgccGTGTTCTTTCTCTATCTTATCATCTCAACACTTTGCCATA
CTGCTAATGCTAAGCAGAAGAATGATAAATTCGAGAAAGCTAAGCAGGAC
TTGGCAAATTTCTCTAAAAGTAATATTATCAAGGATGGAAAAGCAGCTCT
GAAACATGCTGGGTTACTTCAAGATACTAAGAACTCTGGTGAAGCTGAAA
GTCTTATTGATGGTATCCAGAAAAGCAttgttgagaaatttgaatCATTT
GAATTTGATAAGGAAGAGGTTGGATCAGCTTTGGCATCTGGTGTGTCGAA
AGGTTTCCCTGATTTGGTAAAAGGCTTCCAAACTAAGCAATGGTACTACG
CATTATCAGgaactttgaagaTCTTGACAGCACTCACCACAGCTGCAGGA
CCTTATGGTGCAATTGCTGCTCCAATACTTAAGTTGTTGACCATCATTTT
GAATATGTATGGAGCACCAGTGCAAGAATCACAAGAAGATATGATTAAAA
GG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012431-exon-sc0000144-1491911889:540793..541152 | TCONS_00012431-exon-sc0000144-1491911889:540793..541152 | Clytia hemisphaerica | exon |
| TCONS_00012431-exon-sc0000144-1510915933:540793..541152 | TCONS_00012431-exon-sc0000144-1510915933:540793..541152 | Clytia hemisphaerica | exon |
| TCONS_00012431-exon-sc0000144-1575043694:540793..541152 | TCONS_00012431-exon-sc0000144-1575043694:540793..541152 | Clytia hemisphaerica | exon |
| TCONS_00012431-exon-sc0000144-1491911889:541787..541929 | TCONS_00012431-exon-sc0000144-1491911889:541787..541929 | Clytia hemisphaerica | exon |
| TCONS_00012431-exon-sc0000144-1510915933:541787..541929 | TCONS_00012431-exon-sc0000144-1510915933:541787..541929 | Clytia hemisphaerica | exon |
| TCONS_00012431-exon-sc0000144-1575043694:541787..541929 | TCONS_00012431-exon-sc0000144-1575043694:541787..541929 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000144 | supercontig | sc0000144:540793..541929 + |
Blast
The following BLAST results are available for this feature:
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