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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012428 ID=TCONS_00012428|Name=TCONS_00012428|organism=Clytia hemisphaerica|type=transcript|length=461bp
TGGCCCACGAAGCTGATTTCAGCTTCTTTGTCTCTGCTACTCCAGGAACA
GTTTCGTATCGTAATCCAACTAAGGGCACGTGGTTCATCCAAGAGCTATG
CAATGTGTTCACCGAAAATGCTAAAACCAACTCATGGACAAGGCTTCGGC
AAAAAGTTAATAGTAAAATTGGAGAGAGATTTCAGAAGTTACCAAAGAAT
CAAGGAGTTGCAAAAATGATGTCGGACGGTGGTTTAGATACATTGAGAAA
AGAAATTCGTTTCAGACCAAAAAAATCATATCAAAAATACTTGGAGGAGG
ATGAAATCTAGGAGACGTTTAAAATTAAGCTCTGGTTTAGTCGGCCCACT
TTtagccctgcctattctaattgctaGAGTTGGTATAAAGTGGATCGAAA
GTGGGCTGTCTATGTTTGACTTTAGACGGCCAACTCTTTGCCAACTTTTG
CGAAACAATAG Run BLAST on NCBI protein sequence of TCONS_00012428-protein >TCONS_00012428-protein ID=TCONS_00012428-protein|Name=TCONS_00012428-protein|organism=Clytia hemisphaerica|type=polypeptide|length=102bp
AHEADFSFFVSATPGTVSYRNPTKGTWFIQELCNVFTENAKTNSWTRLRQ
KVNSKIGERFQKLPKNQGVAKMMSDGGLDTLRKEIRFRPKKSYQKYLEED
EI Run BLAST on NCBI transcript from alignment at sc0000144:480165..481353+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012428 ID=TCONS_00012428|Name=TCONS_00012428|organism=Clytia hemisphaerica|type=transcript|length=1189bp|location=Sequence derived from alignment at sc0000144:480165..481353+ (Clytia hemisphaerica)
TGGCCCACGAAGCTGATTTCAGCTTCTTTGTCTCTGCTACTCCAGGTATA
TTAAATTAACTCACTGTCAAGCCCTtttcagaaaattcaaaaattgacca
aaaattgaCGTTCAGAGGTTCCTATCCTTGGTTTGGCTTCAGATGCCTGT
AAATTATGAATGATCGATGCAGAATTTCATGTAGagtcaaaaatgcaata
aaaatgtaaacagaggTTTCTGTATCAAAAGTTTTGGCCATTTATAGTGT
GTCCACGAAAAGATTGTCTCTACTCCGAGTAAAGTTATCATAGTCGGTAC
CAAGCAGCGTGTTAACGATGGAAATTATTTATAAGTTTGAGAAATACTCG
AGGTTTATGTTCCAGTGAGCCTTCTAGGTTTAGACTCGAAGAACCTACTA
AAATTATATTAGCCAAAAAAATCTGGCTCTGATTCTTTCTGTTACGATAC
CGTTGGTGAGAGAGCCAGATTGCACCTACACACGCCTTCTCATAAGGTTA
TGAAGTGCCACaattataaactttttgttgaaaaaatgtttctcttttca
ACTAAAACATCCGATTGTCTTTAGACGTGATAAAGAAAACTCTCCAAAGT
CATTAAGaggaaaataatttctttctcAGTAACCAATTAAAATACGTGCT
GAATACATCGCCTTCGAAAAAAAGATCGGGTTCAGCAAACGGCTTTTTGT
CTCCAGGTTTTGGTCGAACACTTTAATAACCCTAATATTTAGTTTAATGT
GTATATCGTTTGATCTTTTCCAGGAACAGTTTCGTATCGTAATCCAACTA
AGGGCACGTGGTTCATCCAAGAGCTATGCAATGTGTTCACCGAAAATGCT
AAAACCAACTCATGGACAAGGCTTCGGCAAAAAGTTAATAGTAAAATTGG
AGAGAGATTTCAGAAGTTACCAAAGAATCAAGGAGTTGCAAAAATGATGT
CGGACGGTGGTTTAGATACATTGAGAAAAGAAATTCGTTTCAGACCAAAA
AAATCATATCAAAAATACTTGGAGGAGGATGAAATCTAGGAGACGTTTAA
AATTAAGCTCTGGTTTAGTCGGCCCACTTTtagccctgcctattctaatt
gctaGAGTTGGTATAAAGTGGATCGAAAGTGGGCTGTCTATGTTTGACTT
TAGACGGCCAACTCTTTGCCAACTTTTGCGAAACAATAG Coding sequence (CDS) from alignment at sc0000144:480165..481353+ >TCONS_00012428 ID=TCONS_00012428|Name=TCONS_00012428|organism=Clytia hemisphaerica|type=CDS|length=618bp|location=Sequence derived from alignment at sc0000144:480165..481353+ (Clytia hemisphaerica)
GCCCACGAAGCTGATTTCAGCTTCTTTGTCTCTGCTACTCCAGGAACAGT
TTCGTATCGTAATCCAACTAAGGGCACGTGGTTCATCCAAGAGCTATGCA
ATGTGTTCACCGAAAATGCTAAAACCAACTCATGGACAAGGCTTCGGCAA
AAAGTTAATAGTAAAATTGGAGAGAGATTTCAGAAGTTACCAAAGAATCA
AGGAGTTGCAAAAATGATGTCGGACGGTGGTTTAGATACATTGAGAAAAG
AAATTCGTTTCAGACCAAAAAAATCATATCAAAAATACTTGGAGGAGGAT
GAAATCTAGGCCCACGAAGCTGATTTCAGCTTCTTTGTCTCTGCTACTCC
AGGAACAGTTTCGTATCGTAATCCAACTAAGGGCACGTGGTTCATCCAAG
AGCTATGCAATGTGTTCACCGAAAATGCTAAAACCAACTCATGGACAAGG
CTTCGGCAAAAAGTTAATAGTAAAATTGGAGAGAGATTTCAGAAGTTACC
AAAGAATCAAGGAGTTGCAAAAATGATGTCGGACGGTGGTTTAGATACAT
TGAGAAAAGAAATTCGTTTCAGACCAAAAAAATCATATCAAAAATACTTG
GAGGAGGATGAAATCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012428-exon-sc0000144-1491911889:480165..480209 | TCONS_00012428-exon-sc0000144-1491911889:480165..480209 | Clytia hemisphaerica | exon |
| TCONS_00012428-exon-sc0000144-1510915933:480165..480209 | TCONS_00012428-exon-sc0000144-1510915933:480165..480209 | Clytia hemisphaerica | exon |
| TCONS_00012428-exon-sc0000144-1575043694:480165..480209 | TCONS_00012428-exon-sc0000144-1575043694:480165..480209 | Clytia hemisphaerica | exon |
| TCONS_00012428-exon-sc0000144-1491911889:480938..481353 | TCONS_00012428-exon-sc0000144-1491911889:480938..481353 | Clytia hemisphaerica | exon |
| TCONS_00012428-exon-sc0000144-1510915933:480938..481353 | TCONS_00012428-exon-sc0000144-1510915933:480938..481353 | Clytia hemisphaerica | exon |
| TCONS_00012428-exon-sc0000144-1575043694:480938..481353 | TCONS_00012428-exon-sc0000144-1575043694:480938..481353 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000144 | supercontig | sc0000144:480165..481353 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004197 | cysteine-type endopeptidase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006508 | proteolysis |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006508 |
proteolysis |
| molecular_function |
GO:0004197 |
cysteine-type endopeptidase activity |
Blast
The following BLAST results are available for this feature:
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