TCONS_00012417 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012417
Unique NameTCONS_00012417
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2309

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012417 ID=TCONS_00012417|Name=TCONS_00012417|organism=Clytia hemisphaerica|type=transcript|length=2309bp
CAGTAATGACGTCCAAAAAAAGATTGCCGGATCAAAAACAATACCGCGTA
GGAGTGCTCAAACCCTGTTGGGAATACCATATAATTGCTTGGAATGTACT
CCGTGGCGGAGATGTTTTGATGTTAGGAGACATCTAACTCGAAGGTAACA
TACTTTCGGACGACACGACGTTGTGCAGACGACAGCTAGACAGAACTTTC
ACCGATATTTGACGACCAAATACAACAACCATGGCTCTTTTCCTCAGAAA
ACACACAGGAACTCCTTTCAAACATGCACAAGTATTATCCCGATCATTTG
CAGTTCGTGGTGTTGAAATGCCTTCAACTGATTTCCAACCGGCTGAATTC
AAGGGAATGCCATACGATGAAGCACGTGCTGCACACGCCAAAAACCTTTT
CCCTCATGTCTCCGAACGTATGTTGTTATACAAAAGACCTGTCTATCTCA
CTCAGGGTCATATGCAATGGTTGTGGGATAGTGAAGGCAAACGATATTTA
GATTTATTTGCTGGCATTGCTACTTGTGGTGTTGGACACTGTCACCCGAA
AATTACAGAATCGATTCAAGATCAAGCATCAAAATTGGTGCATTGCTCAA
ACTTGTACATCAATGCTAAACAAGCGGAATATGCTGAAAAATTGTTGACA
AAATTGCCCGAAAAATATAACCGTGTATACTTTGTGAACAGTGGATCAGA
AGCGAATGATTTCGCTATGACCATGATGAGAGTTTACACTGGAAGCTGGG
ATATCATCGGATTGAGAAACGCTTACCACGGAGCCAGTCCCACCACTCTT
GGCATCACCAACATGGGTCAATACAAATTCCCAACTCCACAAAACTTTGG
TTGTCACACTattcCAAACCCAGATGTTTACAAAGGAATTTGGGGCGGAA
AGAATTGCCGCGATTCTCCCGTTCAAGCTGACAGAGATTGTGATTGTGCT
GAAGGAGTATGTGAGGCCACAGACCTTTACCTCGGTCAATTGGAAGATGT
GTTGACCAATGTCACACCTCCAAAAGTTGCCGGATTCTTTGGTGAACCCA
TCCAGGGTGTCGGTGGTAGCGTTCAATACCCACGTGACTTTTTACAAAAG
ACCTACGAGAAGATTCACGCACGTGGTGGACTTTGTGTGGCTGATGAGGT
TCAAACAGGTTTCGGACGTACTGGTTCACATTATTGGGGATTCCAAGGTT
CTGGACTCAACCCTGACATCATCGTGTGCGCCAAGACCATCGCTAACGGA
TTACCAATGGCTTGCGTTAtcacaacaaaagaaattgcTGACTCAATGAA
CGTTGCTCTTCCATTCAACACCTACTCCTCAAATCCAGTCTCTTGCGCCG
CTGCTATCACCGCTCTCGATGTTATCGACGAAGAAGGTTTACAAGAGAAC
TGTCAACGTGTTGGAACATATTGTTTGGAAGAACTATCGAAGATCCGTGA
TGATTACGAGATTGTCGGGGATGTCCGTGGTAAAGGATTGATGATCGGTA
TCGAAATGGTCGCCGATAAAAAGACGAGAGCACCATTGCAACCAGAGAGA
GTTGGAGATATCATCGAACGAACGAAAGATTACGGAGTCTTGTTTGGTAA
AGGTGGACGATTTGGACAGGTTCTTCGTATCAAACCACCAATGAACGTCA
CTAAAGAAGACATTGATTTCGGACTTGCTGTTCTCAGACAATCTATCGAA
GAACATCTCGCTCAATAGAAGGCGATGTTGTGAAACATACCAACGTTGAA
CATACAATATCAATGCAGGGTTCACAAGAAGACGAGACTATTGTGTATTC
TGGTTAGATATACATCGTCCCAGTAATTTTCGATGGAGCCTTGTCCTTAT
TGAAGAGCGTCATTGAAAATTCATGGACCGTACTGCTGTTCCACAGTggc
aaaaaataaacaaagggAAGCATTATTCAGCACAGTTAAgtttataattt
taaatcacCACGCCATTCCAAAAAtactcatttaaaaaaatatacgcTCA
AGGAACTAATTTGATATTCACACCTTACGTCATTAATGAGTTTTAGCAAA
GATTGACAAAAGGGGTTCTCTAAGATGTCTATAGAATTAATTCTTCCCTC
GCTATTTCTTCACTTGAGAATAAATTTCACATAAGGgtaattttcatcaa
ttttctaTATAATGCCGAAATAGGAGAtctaattatttcaaaatatacaa
agatttatataattaattttataatttttgtcgTTGTAAATATAATGAAT
ACTCATTGACACAAAGTTCAAAACgaattgtttttcttctttggtTTTCC
TGAATGGCA
Run BLAST on NCBI

transcript from alignment at sc0000144:295686..306117+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012417 ID=TCONS_00012417|Name=TCONS_00012417|organism=Clytia hemisphaerica|type=transcript|length=10432bp|location=Sequence derived from alignment at sc0000144:295686..306117+ (Clytia hemisphaerica)
CAGTAATGACGTCCAAAAAAAGATTGCCGGATCAAAAACAATACCGCGTA
GGAGTGCTCAAACCCTGTTGGGAATACCATATAATTGCTTGGAATGTACT
CCGTGGCGGAGATGTTTTGATGTTAGGAGACATCTAACTCGAAGGTTATC
AATGCCATCAATAATTCATCTCGAGAAAAGAAGGGGTTTAAGACAGCAAG
CTTGCTATTATACTTTTTACTAGCTGATATCGGATATCTCAAAGTTGAgg
gaaaacaaaaagattttgcAATACTttccgaaaatcttttttgagatCTG
CTTACACACTCTTGTTTAAGGTAACATACTTTCGGACGACACGACGTTGT
GCAGACGACAGCTAGACAGAACTTTCACCGATATTTGACGACCAAATACA
ACAACCATGGCTCTTTTCCTCAGAAAACACACAGGTATATTCCGCTTTTC
ACTATTTTAGTTCGAGAAAGGTTGGTGGGATGGGAATATTTGGGTTTTAA
GCCAGGCTGgctcttttgaaatatttctgtTGCTTTGAGTTTTGATGTAA
TACTGTACAGTTTTGAGTTGTAGCTGCATATGGTAATACACTTAAAATTT
TCCttcttctaaaattttcataGGAACTCCTTTCAAACATGCACAAGTAT
TATCCCGATCATTTGCAGTTCGTGGTGTTGAAATGCCTTCAACTGATTTC
CAACCGGCTGAATTCAAGGTATCATTTTACTGTATGTTTGTCTTCAATAA
AGGTTTCTGTCTTGGTAGATTCGAAGTGTATGTTATATTTGCAAtagttt
gaaaatttgtgtCTAGTAGGTCTCGCTTGTGTTCTTTCAACcgtattttt
cttcaaaacttttgTAAATTTCTGTTATATCATTGCGAACATGAAGTAAT
TAGATAGACGGGAGTAATGGAGCTATGGAAAAGCAAATTTTGCTGAGTCA
TTATGTCAAatgatttgcataatttttcatacattcaacttattattttt
ttgttatcaACTCAATTATTTTCTTTACTGCTAAATCACAAAACGCTTAT
CTAATCATGGTATCTTTTCACGGCTTTCACGGCAAATCCTACTCGTACTA
TAACAACACAAAAACTTCATATCGAAActcaaacatttcaaaattttact
agTAGAAAAACAAAGTGCTGANAATCCTACTCGTACTATAACAACACAAA
AACTTCATATCGAAActcaaacatttcaaaattttactagTAGAAAAACA
AAGTGCTGACCGCAATAGAGAAAACATTCCTAGTTATTTTTTGCTTGACT
AATAAGAACTGCTATTTACACAAGCAACGATTCCCTTTTTTGGATAATCG
AGGATTAAGCAATAAAGGAAGGATGGGGCTGGCCTGCATGTGGCAAACGA
TCTAGGCGGAAAATGACCACCATCATACCCTTGACTTTTTACCCTTGACA
GTAAATTTGACAATTTACTGATTGAAATATTCCAGTCATATGTAATCATT
TTGAAGCTTAAAAATCATGCGCTCACGATTATTTGTTTCAAAATCATGTA
ACTATGGTTCTCCTGGGGACATACACGCTGACGCTCGCTAATTTGGACTT
GGACGCACGGCGAGAATCTTATTTCCTCGAATTACAAAGAGATTCGAATT
GTAGAAAGCATTTTAGAAGGGTTTTTCTTTGCCAGGGACTGCAaataagt
tcgaataagcgaaagTCTACTGTActtcaaaaaggttttttcctccagaa
aatatgaaatacaTAGATAGGCTGAAGTATTTTTCTAATGAGTATGAAAA
TCTTACGTCAGCTGCTGTGTTCAGGTGACCTCCTTAGAAAGGGTCAGCAG
AAAATTTCCTCTAGTAAAAATACTGAGtgtccaattttccattgttcgGT
GGGCTATGCAATATTTACTTTAAAGACGTGATTGCGAATTTCGAGGAGAA
ATTTGATATGGGTCAGAACTCTGTTTGTCAACTGCTTTTAGAAAAGTACA
TGAAGTTTGTTGACAAGTCATATTCATATGCTGATAAGCCAAAATACAAA
AAGGAGTACTCGAGATATCCCGATTAAAACCTTAAGATTACAGATCGCCG
ATGAGATTGCCAGAATCTTGAAATTCTTTCTTCAAGGGCAAtgaaatctt
tttctcaaaactttatttttagctCTACTAtattttaccttccaaaaaat
TACGATGCAAAGAATAATTgtccttgaaaatttgaaatattcctCTTCGT
AAAGTTTCATTCAATTCTTTATACAATTTTGAACGCTTTTTTAAGTGGTC
AATTCAATCCTTGGTACTGTAGGCTTTAATACTTAACGAATCCCTAATCG
AATATGATTCCTTGAACTATTTCAGGGAATGCCATACGATGAAGCACGTG
CTGCACACGCCAAAAACCTTTTCCCTCATGTCTCCGAACGTATGTTGTTA
TACAAAAGACCTGTCTATCTCACTCAGGTAAGCGtgaaataaaatattaa
tttgtTAGTCTGAAGGTGACTGGCCCAGCTTCGGGCCTTTCACTAGCATG
TCAATGTCCGTGATATGCTGTATTTCCCTTTTTCGAAGAAGCGGTGCTTT
GttaatttaagtttattttgaaaaaaacggcgcCTTGTAACAATCAACGA
ACAAATATTTGACTATTCCTATGTTGCTTCGGCTTCTTGTTATTTGTTGG
agagcattttttcgaatttcgaataTAAACACCTTAAATACCTACCGGAT
CCGccacaaaaaaagtttctctctttaaaaccaattttctcgaattctaa
aaatttcgaaagaatcattcctatttcattggaaagaaaaaagataaact
taaattttgatagtttgtttattaaatttgattctttgaatcaaaaatgt
tcaattgaataaaaaagttgctTTCAGAAAGTGCTTGAGAACGTTAAAAA
TCGGTCTATCAAGTTAAACAAAGGGAAACCTTtttgtggtgcacccggta
gcAATTTCAATATAAACTGTCCACCATCCCCGGATTCTTTAAACAGTTGA
TTCTTGATTTTTAGGGTCATATGCAATGGTTGTGGGATAGTGAAGGCAAA
CGATATTTAGATTTATTTGCTGGCATTGCTACTTGTGGTGTTGGACACTG
TCACCCGTAAGTTAAGAAAATAATATCTTGCTTCTCGAATACGACATTTG
GTAGTCCATCTCGTTCATTTTTTGATAGATGATTCCCCCTATTGGCACGA
ATTCAAAGCAACGTTTAACAATAACGTTTACACATTCTTCATTTTACTTC
AAAACGCTAGAAAGGTATCACCGGATCATTAATTCAATGTTGCTACAACT
TATAGGTATTTATACATAATTAAGGTCTGGATGGGAAAAATAATCACCCG
CTAGGTTCTTGTGGTCATCTTTATCAGGAAACTGGGCTACAGTAACTAAT
AACCAGCATCGACTATCGAATATTTTGAGTGACTTCAGATTTCTCTTTTA
GGAAAATTACAGAATCGATTCAAGATCAAGCATCAAAATTGGTGCATTGC
TCAAACTTGTACATCAATGCTAAACAAGCGGAATATGCTGAAAAATTGTT
GACAAAATTGCCCGAAAAATATAACGTAAGAAAAGCCTTTCTTCTAAGCC
TTATCATTAGCTTTGTAAAAAGGGTATCCCTGTAAGCCGAGAAATTTCAT
GACAGTCTCCTCTGTTATTTTGAGCtagattttcaagttttgccTGATTT
GGTTTGGATACAAAAATTCTATCTTTCCAAAAAGGTTGTCTATCATAGTA
AATAACAATGACGGGAGGCCGAAAATTCGGTAGAACATTCAACAATCCAA
AATGTTAATGTCTTTCTACTTATCCCTTAAATATTTTCCCTTTCATTCTA
CAGCGTGTATACTTTGTGAACAGTGGATCAGAAGCGAATGATTTCGCTAT
GACCATGATGAGAGTTTACACTGGAAGCTGGGATATCATCGGATTGAGGT
ATGATGTGTAGATCTTTATAGAAGAGTTCTTTCAGCTTTGATAAGGTTAT
GTAACTTACCGTGAAATCCACCATTATTGAATTTCTCCCAATCAAAAGTT
TTTCTACCGGTATATGTGCTATTCGAAATGCATTAAACTCAGAAAACGTG
CAAAAGAATACCTGCACTAAATCAATAGTCATCCATCTCGCTAGATTTAA
AATGGTAATGAGTGACGATAAAGGCTCATCCCATTACTAATATTCTTATG
ACCTTTAGACTTCCAATAGGCCCTAATACCCCTCAAACAAGTATTTCTTC
ATTTCTActctatttttgaaatatttccttaTCATTTTCAGAAACGCTTA
CCACGGAGCCAGTCCCACCACTCTTGGCATCACCAACATGGGTCAATACA
AATTCCCAACTCCACAAAACTTTGGTTGTCACACTGTAAGAATCGGCAAT
GATCATTTTTTCGCCATCCGAatgctctctctctctctttgcAGTCTGTT
GAAAATTTTCGCATGCATGCTCCTAACCTCCTAACCTCATCAAAATTATA
CCTCTGAATCTAAATAGACCAACATaatatatttcccttttttcatttca
gattcCAAACCCAGATGTTTACAAAGGAATTTGGGGCGGAAAGAATTGCC
GCGATTCTCCCGTTCAAGTatgaattttaacaaaattaactttaaaattt
AACTAAATTTTACTGCTACATAGATTCGTTCAAGAAATAACTTTCAATAT
GCAACAATAAATTTAgactagccataattttcattaaagtgccaccgcag
aataacgatcaaataagttgttgaatttggaaagaaatgttactgatagc
cgatagtctacaaatattagcaatttgtgtccatctcatagatatcttct
tatagagataagataaagttatttatctgttttttttgtcatctcNACGA
TGTGTAGATCTTTATAGAAAAGTTCTTTCAGCTTTGATAAGGTTATGTAA
CTTACCGTGAAATCCACCATTATTGAATTTCTCCCAATCAAAAGTTTTTC
TACCGGTATATGTGCTNCAATGGCTTGTTTATGtcatactaaacgctact
gtGCTAAACTGCCATTTTACTGTAATAGTCAAACGACAAGTCTTAgaaag
gataaaaatttctaatttccgttgctcagagcggttaataactagttgtg
gtttaaatagggaatttcccaacaaaaaaggaatttcccttaattcgact
ccctgaggtaataaaaaaagacatatagaggtttgaaaatgggtaatcaa
attaaaaaaaatccggaaaagtgtttttaatgatgataaaacaatagaaa
tacagtcaagctaagaatgttaccggtacaccatttaaccggaactaaaa
tactgaNCTCTCTTTGCAGTCTGTTGAAAAAACCTCCTAACCTCATCAAA
ATTATACCTCTGAATCTAAATAGACCAACATaatatatttcccttttttc
atttcagattcCAAACCCAGATGTTTACAAAGGAATTTGGGGCGGAAAGA
ATTGCCGCGATTCTCCCGTTCAAGTatgaattttaacaaaattaacttta
aaatttAACTAAATTTTACTGCTACATAGATTCGTTCAAGAAATAACTTT
CAATATGCAACAATAGATTTAGATTAGATTGCCCACCAATGTGGTTCATA
ATAATCTCTATTATTATAATCTACTATTTTTTAGGCTGACAGAGATTGTG
ATTGTGCTGAAGGTATTTAATTCTTTTTCTAAACGAGTTCAGAATATTTT
GCCATTTCGAGGGTATTTTAgcgttttgcagaatttaaaaTTCAGGCGAG
AATGACATTTCTAGGCTTTCTACTTTACCTAATgggatatttcgatttgg
gaggagTATAATGGCTTCCagactatattctcagcctaggGGGACCATAA
AtaagcttttggatcctcagaccAGAGTCTTAAGTCTCCTGtttaaactc
agagttaaaactgtACTTTCCAACCCTAAGTTAAGGCACTTAAAACTACT
tgccctttttttaattttgcaagGAAATTCTTTTTGTGCAAAATGTTATA
GGCCATAGATAGTTTTGTGTACATAGAAAAATTAGTGAAATGGGAATATT
AAAGAACATAGGATCCCAAAGTAGTCAAACTACTGGCCAAAATTCCTCTA
CTTTTATCTTTGTCTTTCAGGAGTATGTGAGGCCACAGACCTTTACCTCG
GTCAATTGGAAGATGTGTTGACCAATGTCACACCTCCAAAAGTTGCCGGA
TTCTTTGGTGAACCCATCCAGGTcagatttttgttttaaatttgataaCT
TAACTTGCCTTTTCAgattaaaactttcttttctccataacttttttttt
gctgagtaTGAACTGTTTATTTAAAAACACAGCTTCATTAGCTAAGCCAT
GTATcattgatccagtaaaaaatctgtttttccagaatgaaacaatgaaa
atatagtTTACCAATGGGGAATTAGTTTCAGGATCTTTTAAGCGACTATT
ACCGTTGGGGTCTTTATTGCACAGGAATCTTTATAACAAGTTAGCTACTT
ATACTAAATTGGCGTTTTTCTGATCATATCATGTAGGGTGTCGGTGGTAG
CGTTCAATACCCACGTGACTTTTTACAAAAGACCTACGAGAAGATTCACG
CACGTGGTGGACTTTGTGTGGCTGATGAGGTAgccatttttttatttcca
aatttGTTTACACATTCATTGTATAGTTCTTTATTCACCATTTCCCATGC
TTTCGTGTAAACATTTCAAAGTCAATTATTCTGTCATTCACCAAAATCCA
TCCGGATTCATATCTTATAGTTTcatcagaaaattattttgcacAGAAGT
AATCTATTATAATATCTATAGAATTTAGTAAATGTTATTTGTTCTCCTTC
AAAAAGGTTCAAACAGGTTTCGGACGTACTGGTTCACATTATTGGGGATT
CCAAGGTTCTGGACTCAACCCTGACATCAGTAAGTGATTCGCTCTCCTGG
TTTCTTTCTAATTCTTGAAACGGAAATTTACAATTAATATCATAACATTT
CCTGATAAATTCAGTCAGGCTAAcaataaaagataaaagattTAGGCTTT
AACGGGTGGTCAGATCTGAGATTTAGTGTGAATTAATAAACCAGATACTC
TGGACGGGTTTCATAGAGTTTTTTCGATAAAGTGAAGTATTATATTTACT
TACTTGTTGTTCACAGTCGTGTGCGCCAAGACCATCGCTAACGGATTACC
AATGGCTTGCGTTAtcacaacaaaagaaattgcTGACTCAATGAACGTTG
CTCTTCCATTCAACACCTACTCCTCAAATCCAGTCTCTTGCGCCGCTGCT
ATCACCGCTCTCGATGTAAGCTCTCTCTCATGGAATCATTCAATTAAGGT
TACATACCAGGTTGATTTCATGGATTATGTTAACAGTTTTTCTCTGACCG
CAATACTTGTTCGTCTGATGATTTCCAATTACTTTAAACTCACGAGTGAA
CTTTTTTTCTGAcgccaaaacttttttttagaaTTAATACTCGATTAAAA
GCAATTACCTGATTTGATTAGATCCCTTGAATGGTCTTGAGTTCAGTTAC
AGTTGCACAAATAATGTGCTGAACCTTTCTACGGGATGTAAGACAGCATA
AAAATTGGCACCTTTACCAGTTTCCCAATATTCCGTTTCTATTTTGTGGC
GATACGCCTTGTTAATAAAGGCAGTTTCATAACGACGTTGTTTTCATTGT
AGGTTATCGACGAAGAAGGTTTACAAGAGAACTGTCAACGTGTTGGAACA
TATTGTTTGGAAGAACTATCGAAGATCCGTGATGATTACGAGATTGTCGG
GGATGTCCGTGGTAAAGGATTGATGATCGGTATCGAAATGGTCGCCGATA
AAAAGGTATGCGTAAAGTTTGGTATGTCAGTTCAGTCGATATTATCCTCC
TTGTCTCCTTGTGTATTCAAATCTCAATCCTCTGTAAGGTCTATACCGAC
TTAATAGTTGCTTACGGATTACTATCAAAAGTATGTTAAATTTCTACAAT
AAAGGTTACCAATAATTTCACAATTATACCCTTTTCGAAGATAATGAGGT
TCATTCTTTATTCACTTTCCAGACGAGAGCACCATTGCAACCAGAGAGAG
TTGGAGATATCATCGAACGAACGAAAGATTACGGAGTCTTGTTTGGTAAA
GGTGGACGATTTGGACAGGTAGATTTTCTTCTCATCATGCTTTGATCTTT
GTTGACCACCTCCTAGTCAAAcaaacatttttcattttgatgtgTCTGGT
TTAAGGTCTTGTTTACCAATAGATCATCCACGTCGCAAATTAAGGATGTA
GCTCATGCACACTCCGTCGACTTAGTTATTGTACGTGATTAAAAATTAGC
AGCAACTTTGGTTCAGTGCGTTATAGTTGCACCAAAAGTTTCAGAACTTT
TATGTCTCATGGTCTAATAAAAACTGGAGCAAGAATTCATGTTTCTTCGA
ATGTCAAAGAGAGTCGAAATTTAAGAAGTATGACTGTTTCTTCACTAGTT
TGAATTACCTTATTAACTCGAAACTGGAATTATAGCGTCCACTGTGTCTT
GTAGAAATTAGTTGATTGCCCTAAATGACCAGAGTTGCAATCAAATTATG
TTTTCCATTCAGGTTCTTCGTATCAAACCACCAATGAACGTCACTAAAGA
AGACATTGATTTCGGACTTGCTGTTCTCAGACAATCTATCGAAGAACATC
TCGCTCAATAGAAGGCGATGTTGTGAAACATACCAACGTTGAACATACAA
TATCAATGCAGGGTTCACAAGAAGACGAGACTATTGTGTATTCTGGTTAG
ATATACATCGTCCCAGTAATTTTCGATGGAGCCTTGTCCTTATTGAAGAG
CGTCATTGAAAATTCATGGACCGTACTGCTGTTCCACAggcaaaaaataa
acaaagggAAGCATTATTCAGCACAGTTAAgtttataattttaaatcacC
ACGCCATTCCAAAAAtgctcatttaaaaaaataatttgatattCACACCT
TACGTCATTAATGAGTTTTAGCAAAGATTGACAAAAGGGGTTCTCTAAGA
TGTCTATAGAATTAATTCTTCCCNCGAGGTTCACTCTTTATTCCTTTTCC
AGACGAGAGCACCATTGCAACCAGAGAGAGTTGGAGATATCATCGAACGA
ACGAAAGATTACGGAGTCTTGTTCGGTAAAGGTGGACGATTTGGACAGGT
AGATTTTCTTCTCAGCATGCTATGATCTTAGTTGACCACCTCCTAGTCAA
ACAAACAGTTTTCATTTTGATGTGTCTGGTTTAAGGTCTAGTTTACCTAT
AGATCATCCACGTCGCAAATTAAGGATGTAGCTCATGCACACTCCGTCGA
CTTAGTTATTGTACGTGATTAAAAATTAGCAGTAAGTTTGGTTCAGTGCG
TTATAGTTGCACCAAAAGTTTCAGAACTTTTATGTCTCATGGTCTAATAA
AAACTTGAGCGAGAATTCATATTTCTTCAAATGTCAAAGAGAGTCGAAAT
TTAAGAAGTATGACTGTTTCTTCACTAGTTTGAATTACCTTATTAACTCG
AAACTGGAATTATAGCGTCCACTGTGTCTTGTAGAAATTAGTTGATTGCC
CTAAATGACCAGAGTTGCAATCAAATTATGTTTTCCATTCAGGTTCTTCG
TATCAAACCACCAATGAACGTCACTAAAGAAGACATTGATTTCGGACTTG
CTGTTCTCAGACAATCTATCGAAGAACATCTCGCTCAATAGAAGGCGATG
TTGTGAAACATACCAACGTTGAACATACAATATCAATGCAGGGTTCACAA
GAAGACGAGACTATTGTGTATTCTGGTTAGATATACATCGTCCCAGTAAT
TTTCGATGGAGCCTTGTCCTTATTGAAGAGCGTCATTGAAAATTCATGGA
CCGTACTGCTGTTCCACAGTggcaaaaaataaacaaagggAAGCATTATT
CAGCACAGTTAAgtttataattttaaatcacCACGCCATTCCAAAAAtac
tcatttaaaaaaatatacgcTCAAGGAACTAATTTGATATTCACACCTTA
CGTCATTAATGAGTTTTAGCAAAGATTGACAAAAGGGGTTCTCTAAGATG
TCTATAGAATTAATTCTTCCCTCGCTATTTCTTCACTTGAGAATAAATTT
CACATAAGGgtaattttcatcaattttctaTATAATGCCGAAATAGGAGA
tctaattatttcaaaatatacaaagatttatataattaattttataattt
ttgtcgTTGTAAATATAATGAATACTCATTGACACAAAGTTCAAAACgaa
ttgtttttcttctttggtTTTCCTGAATGGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006972XLOC_006972Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012417-exon-sc0000144-1491911889:295686..295829TCONS_00012417-exon-sc0000144-1491911889:295686..295829Clytia hemisphaericaexon
TCONS_00012417-exon-sc0000144-1510915933:295686..295829TCONS_00012417-exon-sc0000144-1510915933:295686..295829Clytia hemisphaericaexon
TCONS_00012417-exon-sc0000144-1575043694:295686..295829TCONS_00012417-exon-sc0000144-1575043694:295686..295829Clytia hemisphaericaexon
TCONS_00012417-exon-sc0000144-1491911889:296006..296119TCONS_00012417-exon-sc0000144-1491911889:296006..296119Clytia hemisphaericaexon
TCONS_00012417-exon-sc0000144-1510915933:296006..296119TCONS_00012417-exon-sc0000144-1510915933:296006..296119Clytia hemisphaericaexon
TCONS_00012417-exon-sc0000144-1575043694:296006..296119TCONS_00012417-exon-sc0000144-1575043694:296006..296119Clytia hemisphaericaexon
TCONS_00012417-exon-sc0000144-1491911889:296309..296403TCONS_00012417-exon-sc0000144-1491911889:296309..296403Clytia hemisphaericaexon
TCONS_00012417-exon-sc0000144-1510915933:296309..296403TCONS_00012417-exon-sc0000144-1510915933:296309..296403Clytia hemisphaericaexon
TCONS_00012417-exon-sc0000144-1575043694:296309..296403TCONS_00012417-exon-sc0000144-1575043694:296309..296403Clytia hemisphaericaexon
TCONS_00012417-exon-sc0000144-1491911889:298061..298162TCONS_00012417-exon-sc0000144-1491911889:298061..298162Clytia hemisphaericaexon
TCONS_00012417-exon-sc0000144-1510915933:298061..298162TCONS_00012417-exon-sc0000144-1510915933:298061..298162Clytia hemisphaericaexon
TCONS_00012417-exon-sc0000144-1575043694:298061..298162TCONS_00012417-exon-sc0000144-1575043694:298061..298162Clytia hemisphaericaexon
TCONS_00012417-exon-sc0000144-1491911889:298750..298841TCONS_00012417-exon-sc0000144-1491911889:298750..298841Clytia hemisphaericaexon
TCONS_00012417-exon-sc0000144-1510915933:298750..298841TCONS_00012417-exon-sc0000144-1510915933:298750..298841Clytia hemisphaericaexon
TCONS_00012417-exon-sc0000144-1575043694:298750..298841TCONS_00012417-exon-sc0000144-1575043694:298750..298841Clytia hemisphaericaexon
TCONS_00012417-exon-sc0000144-1491911889:299187..299310TCONS_00012417-exon-sc0000144-1491911889:299187..299310Clytia hemisphaericaexon
TCONS_00012417-exon-sc0000144-1510915933:299187..299310TCONS_00012417-exon-sc0000144-1510915933:299187..299310Clytia hemisphaericaexon
TCONS_00012417-exon-sc0000144-1575043694:299187..299310TCONS_00012417-exon-sc0000144-1575043694:299187..299310Clytia hemisphaericaexon
TCONS_00012417-exon-sc0000144-1491911889:299589..299683TCONS_00012417-exon-sc0000144-1491911889:299589..299683Clytia hemisphaericaexon
TCONS_00012417-exon-sc0000144-1510915933:299589..299683TCONS_00012417-exon-sc0000144-1510915933:299589..299683Clytia hemisphaericaexon
TCONS_00012417-exon-sc0000144-1575043694:299589..299683TCONS_00012417-exon-sc0000144-1575043694:299589..299683Clytia hemisphaericaexon
TCONS_00012417-exon-sc0000144-1491911889:300027..300120TCONS_00012417-exon-sc0000144-1491911889:300027..300120Clytia hemisphaericaexon
TCONS_00012417-exon-sc0000144-1510915933:300027..300120TCONS_00012417-exon-sc0000144-1510915933:300027..300120Clytia hemisphaericaexon
TCONS_00012417-exon-sc0000144-1575043694:300027..300120TCONS_00012417-exon-sc0000144-1575043694:300027..300120Clytia hemisphaericaexon
TCONS_00012417-exon-sc0000144-1491911889:300287..300352TCONS_00012417-exon-sc0000144-1491911889:300287..300352Clytia hemisphaericaexon
TCONS_00012417-exon-sc0000144-1510915933:300287..300352TCONS_00012417-exon-sc0000144-1510915933:300287..300352Clytia hemisphaericaexon
TCONS_00012417-exon-sc0000144-1575043694:300287..300352TCONS_00012417-exon-sc0000144-1575043694:300287..300352Clytia hemisphaericaexon
TCONS_00012417-exon-sc0000144-1491911889:301420..301447TCONS_00012417-exon-sc0000144-1491911889:301420..301447Clytia hemisphaericaexon
TCONS_00012417-exon-sc0000144-1510915933:301420..301447TCONS_00012417-exon-sc0000144-1510915933:301420..301447Clytia hemisphaericaexon
TCONS_00012417-exon-sc0000144-1575043694:301420..301447TCONS_00012417-exon-sc0000144-1575043694:301420..301447Clytia hemisphaericaexon
TCONS_00012417-exon-sc0000144-1491911889:301906..302006TCONS_00012417-exon-sc0000144-1491911889:301906..302006Clytia hemisphaericaexon
TCONS_00012417-exon-sc0000144-1510915933:301906..302006TCONS_00012417-exon-sc0000144-1510915933:301906..302006Clytia hemisphaericaexon
TCONS_00012417-exon-sc0000144-1575043694:301906..302006TCONS_00012417-exon-sc0000144-1575043694:301906..302006Clytia hemisphaericaexon
TCONS_00012417-exon-sc0000144-1491911889:302322..302414TCONS_00012417-exon-sc0000144-1491911889:302322..302414Clytia hemisphaericaexon
TCONS_00012417-exon-sc0000144-1510915933:302322..302414TCONS_00012417-exon-sc0000144-1510915933:302322..302414Clytia hemisphaericaexon
TCONS_00012417-exon-sc0000144-1575043694:302322..302414TCONS_00012417-exon-sc0000144-1575043694:302322..302414Clytia hemisphaericaexon
TCONS_00012417-exon-sc0000144-1491911889:302642..302714TCONS_00012417-exon-sc0000144-1491911889:302642..302714Clytia hemisphaericaexon
TCONS_00012417-exon-sc0000144-1510915933:302642..302714TCONS_00012417-exon-sc0000144-1510915933:302642..302714Clytia hemisphaericaexon
TCONS_00012417-exon-sc0000144-1575043694:302642..302714TCONS_00012417-exon-sc0000144-1575043694:302642..302714Clytia hemisphaericaexon
TCONS_00012417-exon-sc0000144-1491911889:302952..303100TCONS_00012417-exon-sc0000144-1491911889:302952..303100Clytia hemisphaericaexon
TCONS_00012417-exon-sc0000144-1510915933:302952..303100TCONS_00012417-exon-sc0000144-1510915933:302952..303100Clytia hemisphaericaexon
TCONS_00012417-exon-sc0000144-1575043694:302952..303100TCONS_00012417-exon-sc0000144-1575043694:302952..303100Clytia hemisphaericaexon
TCONS_00012417-exon-sc0000144-1491911889:303488..303640TCONS_00012417-exon-sc0000144-1491911889:303488..303640Clytia hemisphaericaexon
TCONS_00012417-exon-sc0000144-1510915933:303488..303640TCONS_00012417-exon-sc0000144-1510915933:303488..303640Clytia hemisphaericaexon
TCONS_00012417-exon-sc0000144-1575043694:303488..303640TCONS_00012417-exon-sc0000144-1575043694:303488..303640Clytia hemisphaericaexon
TCONS_00012417-exon-sc0000144-1491911889:303858..303953TCONS_00012417-exon-sc0000144-1491911889:303858..303953Clytia hemisphaericaexon
TCONS_00012417-exon-sc0000144-1510915933:303858..303953TCONS_00012417-exon-sc0000144-1510915933:303858..303953Clytia hemisphaericaexon
TCONS_00012417-exon-sc0000144-1575043694:303858..303953TCONS_00012417-exon-sc0000144-1575043694:303858..303953Clytia hemisphaericaexon
TCONS_00012417-exon-sc0000144-1491911889:305428..306117TCONS_00012417-exon-sc0000144-1491911889:305428..306117Clytia hemisphaericaexon
TCONS_00012417-exon-sc0000144-1510915933:305428..306117TCONS_00012417-exon-sc0000144-1510915933:305428..306117Clytia hemisphaericaexon
TCONS_00012417-exon-sc0000144-1575043694:305428..306117TCONS_00012417-exon-sc0000144-1575043694:305428..306117Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000144supercontigsc0000144:295686..306117 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.75486	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.000681104	3.73553	0	0	0	0
Blast
[Close]
BLAST of TCONS_00012417 vs. Swiss-Prot (Human)
Match: AGT2 (Alanine--glyoxylate aminotransferase 2, mitochondrial OS=Homo sapiens GN=AGXT2 PE=1 SV=1)

HSP 1 Score: 499.59 bits (1285), Expect = 2.401e-168
Identity = 237/467 (50.75%), Postives = 305/467 (65.31%), Query Frame = 3 
Query:  318 MPSTDFQPAEFKGMPYDEARAAHAKNLFPHVSERMLLYKRPVYLTQGHMQWLWDSEGKRYLDLFAGIATCGVGHCHPKITESIQDQASKLVHCSNLYINAKQAEYAEKLLTKLPEKYNRVYFVNSGSEANDFAMTMMRVYTGSWDIIGLRNAYHGASPTTLGITNMGQYKFPTPQNFGCHTIPNPDVYKGIWGGKNCRDSPVQADRDCDCAEGVCEATDLYLGQLEDVLTNVTPPKVAGFFGEPIQGVGGSVQYPRDFLQKTYEKIHARGGLCVADEVQTGFGRTGSHYWGFQGSGLNPDIIVCAKTIANGLPMACVITTKEIADSMNVALP-FNTYSSNPVSCAAAITALDVIDEEGLQENCQRVGTYCLEELSKIRDDYEIVGDVRGKGLMIGIEMVADKKTRAPLQPERVGDIIERTKDYGVLFGKGGRFGQVLRIKPPMNVTKEDIDFGLAVLRQSIEEHLAQ 1715
            MP  DF P  ++ + Y+     H ++L P V+     +++P+ L QGHM+WL+D+EG RYLD F+GI T  VGHCHPK+    Q Q  +L H S ++ +    EYAEKL   LPE    ++ VNSGSEAN+ AM M R ++ + DII  R AYHG SP TLG+TN+G YK   P   GC     PDV++G WGG +CRDSPVQ  R C CA   C+A D Y+ Q +D L+      +AGFF EPIQGV G VQYP+ FL++ +E + ARGG+C+ADEVQTGFGR GSH+WGFQ   + PDI+  AK I NG PMA VITT EIA S+   L  FNT+  NP++CA     L+VI EE LQEN Q VGTY L + +K+RD++EIVGDVRGKGLMIGIEMV DK +  PL  E V  I E  K  G+L G+G  F Q  RI P M +TK ++DF + V R ++ +H+ +
Sbjct:   48 MPPCDFMPERYQSLGYNRVLEIHKEHLSPVVTA---YFQKPLLLHQGHMEWLFDAEGSRYLDFFSGIVTVSVGHCHPKVNAVAQKQLGRLWHTSTVFFHPPMHEYAEKLAALLPEPLKVIFLVNSGSEANELAMLMARAHSNNIDIISFRGAYHGCSPYTLGLTNVGTYKMELPGGTGCQPTMCPDVFRGPWGGSHCRDSPVQTIRKCSCAPDCCQAKDQYIEQFKDTLSTSVAKSIAGFFAEPIQGVNGVVQYPKGFLKEAFELVRARGGVCIADEVQTGFGRLGSHFWGFQTHDVLPDIVTMAKGIGNGFPMAAVITTPEIAKSLAKCLQHFNTFGGNPMACAIGSAVLEVIKEENLQENSQEVGTYMLLKFAKLRDEFEIVGDVRGKGLMIGIEMVQDKISCRPLPREEVNQIHEDCKHMGLLVGRGSIFSQTFRIAPSMCITKPEVDFAVEVFRSALTQHMER 511
The following BLAST results are available for this feature:
BLAST of TCONS_00012417 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
AGT22.401e-16850.75Alanine--glyoxylate aminotransferase 2, mitochondr... [more]
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