TCONS_00012416 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012416
Unique NameTCONS_00012416
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2311

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012416 ID=TCONS_00012416|Name=TCONS_00012416|organism=Clytia hemisphaerica|type=transcript|length=2311bp
AACAGTAATGACGTCCAAAAAAAGATTGCCGGATCAAAAACAATACCGCG
TAGGAGTGCTCAAACCCTGTTGGGAATACCATATAATTGCTTGGAATGTA
CTCCGTGGCGGAGATGTTTTGATGTTAGGAGACATCTAACTCGAAGGTAA
CATACTTTCGGACGACACGACGTTGTGCAGACGACAGCTAGACAGAACTT
TCACCGATATTTGACGACCAAATACAACAACCATGGCTCTTTTCCTCAGA
AAACACACAGGAACTCCTTTCAAACATGCACAAGTATTATCCCGATCATT
TGCAGTTCGTGGTGTTGAAATGCCTTCAACTGATTTCCAACCGGCTGAAT
TCAAGGGAATGCCATACGATGAAGCACGTGCTGCACACGCCAAAAACCTT
TTCCCTCATGTCTCCGAACGTATGTTGTTATACAAAAGACCTGTCTATCT
CACTCAGGGTCATATGCAATGGTTGTGGGATAGTGAAGGCAAACGATATT
TAGATTTATTTGCTGGCATTGCTACTTGTGGTGTTGGACACTGTCACCCG
AAAATTACAGAATCGATTCAAGATCAAGCATCAAAATTGGTGCATTGCTC
AAACTTGTACATCAATGCTAAACAAGCGGAATATGCTGAAAAATTGTTGA
CAAAATTGCCCGAAAAATATAACCGTGTATACTTTGTGAACAGTGGATCA
GAAGCGAATGATTTCGCTATGACCATGATGAGAGTTTACACTGGAAGCTG
GGATATCATCGGATTGAGAAACGCTTACCACGGAGCCAGTCCCACCACTC
TTGGCATCACCAACATGGGTCAATACAAATTCCCAACTCCACAAAACTTT
GGTTGTCACACTattcCAAACCCAGATGTTTACAAAGGAATTTGGGGCGG
AAAGAATTGCCGCGATTCTCCCGTTCAAGCTGACAGAGATTGTGATTGTG
CTGAAGGAGTATGTGAGGCCACAGACCTTTACCTCGGTCAATTGGAAGAT
GTGTTGACCAATGTCACACCTCCAAAAGTTGCCGGATTCTTTGGTGAACC
CATCCAGGGTGTCGGTGGTAGCGTTCAATACCCACGTGACTTTTTACAAA
AGACCTACGAGAAGATTCACGCACGTGGTGGACTTTGTGTGGCTGATGAG
GTTCAAACAGGTTTCGGACGTACTGGTTCACATTATTGGGGATTCCAAGG
TTCTGGACTCAACCCTGACATCATCGTGTGCGCCAAGACCATCGCTAACG
GATTACCAATGGCTTGCGTTAtcacaacaaaagaaattgcTGACTCAATG
AACGTTGCTCTTCCATTCAACACCTACTCCTCAAATCCAGTCTCTTGCGC
CGCTGCTATCACCGCTCTCGATGTTATCGACGAAGAAGGTTTACAAGAGA
ACTGTCAACGTGTTGGAACATATTGTTTGGAAGAACTATCGAAGATCCGT
GATGATTACGAGATTGTCGGGGATGTCCGTGGTAAAGGATTGATGATCGG
TATCGAAATGGTCGCCGATAAAAAGACGAGAGCACCATTGCAACCAGAGA
GAGTTGGAGATATCATCGAACGAACGAAAGATTACGGAGTCTTGTTCGGT
AAAGGTGGACGATTTGGACAGGTTCTTCGTATCAAACCACCAATGAACGT
CACTAAAGAAGACATTGATTTCGGACTTGCTGTTCTCAGACAATCTATCG
AAGAACATCTCGCTCAATAGAAGGCGATGTTGTGAAACATACCAACGTTG
AACATACAATATCAATGCAGGGTTCACAAGAAGACGAGACTATTGTGTAT
TCTGGTTAGATATACATCGTCCCAGTAATTTTCGATGGAGCCTTGTCCTT
ATTGAAGAGCGTCATTGAAAATTCATGGACCGTACTGCTGTTCCACAGTg
gcaaaaaataaacaaagggAAGCATTATTCAGCACAGTTAAgtttataat
tttaaatcacCACGCCATTCCAAAAAtactcatttaaaaaaatatacgcT
CAAGGAACTAATTTGATATTCACACCTTACGTCATTAATGAGTTTTAGCA
AAGATTGACAAAAGGGGTTCTCTAAGATGTCTATAGAATTAATTCTTCCC
TCGCTATTTCTTCACTTGAGAATAAATTTCACATAAGGgtaattttcatc
aattttctaTATAATGCCGAAATAGGAGAtctaattatttcaaaatatac
aaagatttatataattaattttataatttttgtcgTTGTAAATATAATGA
ATACTCATTGACACAAAGTTCAAAACgaattgtttttcttctttggtTTT
CCTGAATGGCA
Run BLAST on NCBI

transcript from alignment at sc0000144:295684..306117+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012416 ID=TCONS_00012416|Name=TCONS_00012416|organism=Clytia hemisphaerica|type=transcript|length=10434bp|location=Sequence derived from alignment at sc0000144:295684..306117+ (Clytia hemisphaerica)
AACAGTAATGACGTCCAAAAAAAGATTGCCGGATCAAAAACAATACCGCG
TAGGAGTGCTCAAACCCTGTTGGGAATACCATATAATTGCTTGGAATGTA
CTCCGTGGCGGAGATGTTTTGATGTTAGGAGACATCTAACTCGAAGGTTA
TCAATGCCATCAATAATTCATCTCGAGAAAAGAAGGGGTTTAAGACAGCA
AGCTTGCTATTATACTTTTTACTAGCTGATATCGGATATCTCAAAGTTGA
gggaaaacaaaaagattttgcAATACTttccgaaaatcttttttgagatC
TGCTTACACACTCTTGTTTAAGGTAACATACTTTCGGACGACACGACGTT
GTGCAGACGACAGCTAGACAGAACTTTCACCGATATTTGACGACCAAATA
CAACAACCATGGCTCTTTTCCTCAGAAAACACACAGGTATATTCCGCTTT
TCACTATTTTAGTTCGAGAAAGGTTGGTGGGATGGGAATATTTGGGTTTT
AAGCCAGGCTGgctcttttgaaatatttctgtTGCTTTGAGTTTTGATGT
AATACTGTACAGTTTTGAGTTGTAGCTGCATATGGTAATACACTTAAAAT
TTTCCttcttctaaaattttcataGGAACTCCTTTCAAACATGCACAAGT
ATTATCCCGATCATTTGCAGTTCGTGGTGTTGAAATGCCTTCAACTGATT
TCCAACCGGCTGAATTCAAGGTATCATTTTACTGTATGTTTGTCTTCAAT
AAAGGTTTCTGTCTTGGTAGATTCGAAGTGTATGTTATATTTGCAAtagt
ttgaaaatttgtgtCTAGTAGGTCTCGCTTGTGTTCTTTCAACcgtattt
ttcttcaaaacttttgTAAATTTCTGTTATATCATTGCGAACATGAAGTA
ATTAGATAGACGGGAGTAATGGAGCTATGGAAAAGCAAATTTTGCTGAGT
CATTATGTCAAatgatttgcataatttttcatacattcaacttattattt
ttttgttatcaACTCAATTATTTTCTTTACTGCTAAATCACAAAACGCTT
ATCTAATCATGGTATCTTTTCACGGCTTTCACGGCAAATCCTACTCGTAC
TATAACAACACAAAAACTTCATATCGAAActcaaacatttcaaaatttta
ctagTAGAAAAACAAAGTGCTGANAATCCTACTCGTACTATAACAACACA
AAAACTTCATATCGAAActcaaacatttcaaaattttactagTAGAAAAA
CAAAGTGCTGACCGCAATAGAGAAAACATTCCTAGTTATTTTTTGCTTGA
CTAATAAGAACTGCTATTTACACAAGCAACGATTCCCTTTTTTGGATAAT
CGAGGATTAAGCAATAAAGGAAGGATGGGGCTGGCCTGCATGTGGCAAAC
GATCTAGGCGGAAAATGACCACCATCATACCCTTGACTTTTTACCCTTGA
CAGTAAATTTGACAATTTACTGATTGAAATATTCCAGTCATATGTAATCA
TTTTGAAGCTTAAAAATCATGCGCTCACGATTATTTGTTTCAAAATCATG
TAACTATGGTTCTCCTGGGGACATACACGCTGACGCTCGCTAATTTGGAC
TTGGACGCACGGCGAGAATCTTATTTCCTCGAATTACAAAGAGATTCGAA
TTGTAGAAAGCATTTTAGAAGGGTTTTTCTTTGCCAGGGACTGCAaataa
gttcgaataagcgaaagTCTACTGTActtcaaaaaggttttttcctccag
aaaatatgaaatacaTAGATAGGCTGAAGTATTTTTCTAATGAGTATGAA
AATCTTACGTCAGCTGCTGTGTTCAGGTGACCTCCTTAGAAAGGGTCAGC
AGAAAATTTCCTCTAGTAAAAATACTGAGtgtccaattttccattgttcg
GTGGGCTATGCAATATTTACTTTAAAGACGTGATTGCGAATTTCGAGGAG
AAATTTGATATGGGTCAGAACTCTGTTTGTCAACTGCTTTTAGAAAAGTA
CATGAAGTTTGTTGACAAGTCATATTCATATGCTGATAAGCCAAAATACA
AAAAGGAGTACTCGAGATATCCCGATTAAAACCTTAAGATTACAGATCGC
CGATGAGATTGCCAGAATCTTGAAATTCTTTCTTCAAGGGCAAtgaaatc
tttttctcaaaactttatttttagctCTACTAtattttaccttccaaaaa
atTACGATGCAAAGAATAATTgtccttgaaaatttgaaatattcctCTTC
GTAAAGTTTCATTCAATTCTTTATACAATTTTGAACGCTTTTTTAAGTGG
TCAATTCAATCCTTGGTACTGTAGGCTTTAATACTTAACGAATCCCTAAT
CGAATATGATTCCTTGAACTATTTCAGGGAATGCCATACGATGAAGCACG
TGCTGCACACGCCAAAAACCTTTTCCCTCATGTCTCCGAACGTATGTTGT
TATACAAAAGACCTGTCTATCTCACTCAGGTAAGCGtgaaataaaatatt
aatttgtTAGTCTGAAGGTGACTGGCCCAGCTTCGGGCCTTTCACTAGCA
TGTCAATGTCCGTGATATGCTGTATTTCCCTTTTTCGAAGAAGCGGTGCT
TTGttaatttaagtttattttgaaaaaaacggcgcCTTGTAACAATCAAC
GAACAAATATTTGACTATTCCTATGTTGCTTCGGCTTCTTGTTATTTGTT
GGagagcattttttcgaatttcgaataTAAACACCTTAAATACCTACCGG
ATCCGccacaaaaaaagtttctctctttaaaaccaattttctcgaattct
aaaaatttcgaaagaatcattcctatttcattggaaagaaaaaagataaa
cttaaattttgatagtttgtttattaaatttgattctttgaatcaaaaat
gttcaattgaataaaaaagttgctTTCAGAAAGTGCTTGAGAACGTTAAA
AATCGGTCTATCAAGTTAAACAAAGGGAAACCTTtttgtggtgcacccgg
tagcAATTTCAATATAAACTGTCCACCATCCCCGGATTCTTTAAACAGTT
GATTCTTGATTTTTAGGGTCATATGCAATGGTTGTGGGATAGTGAAGGCA
AACGATATTTAGATTTATTTGCTGGCATTGCTACTTGTGGTGTTGGACAC
TGTCACCCGTAAGTTAAGAAAATAATATCTTGCTTCTCGAATACGACATT
TGGTAGTCCATCTCGTTCATTTTTTGATAGATGATTCCCCCTATTGGCAC
GAATTCAAAGCAACGTTTAACAATAACGTTTACACATTCTTCATTTTACT
TCAAAACGCTAGAAAGGTATCACCGGATCATTAATTCAATGTTGCTACAA
CTTATAGGTATTTATACATAATTAAGGTCTGGATGGGAAAAATAATCACC
CGCTAGGTTCTTGTGGTCATCTTTATCAGGAAACTGGGCTACAGTAACTA
ATAACCAGCATCGACTATCGAATATTTTGAGTGACTTCAGATTTCTCTTT
TAGGAAAATTACAGAATCGATTCAAGATCAAGCATCAAAATTGGTGCATT
GCTCAAACTTGTACATCAATGCTAAACAAGCGGAATATGCTGAAAAATTG
TTGACAAAATTGCCCGAAAAATATAACGTAAGAAAAGCCTTTCTTCTAAG
CCTTATCATTAGCTTTGTAAAAAGGGTATCCCTGTAAGCCGAGAAATTTC
ATGACAGTCTCCTCTGTTATTTTGAGCtagattttcaagttttgccTGAT
TTGGTTTGGATACAAAAATTCTATCTTTCCAAAAAGGTTGTCTATCATAG
TAAATAACAATGACGGGAGGCCGAAAATTCGGTAGAACATTCAACAATCC
AAAATGTTAATGTCTTTCTACTTATCCCTTAAATATTTTCCCTTTCATTC
TACAGCGTGTATACTTTGTGAACAGTGGATCAGAAGCGAATGATTTCGCT
ATGACCATGATGAGAGTTTACACTGGAAGCTGGGATATCATCGGATTGAG
GTATGATGTGTAGATCTTTATAGAAGAGTTCTTTCAGCTTTGATAAGGTT
ATGTAACTTACCGTGAAATCCACCATTATTGAATTTCTCCCAATCAAAAG
TTTTTCTACCGGTATATGTGCTATTCGAAATGCATTAAACTCAGAAAACG
TGCAAAAGAATACCTGCACTAAATCAATAGTCATCCATCTCGCTAGATTT
AAAATGGTAATGAGTGACGATAAAGGCTCATCCCATTACTAATATTCTTA
TGACCTTTAGACTTCCAATAGGCCCTAATACCCCTCAAACAAGTATTTCT
TCATTTCTActctatttttgaaatatttccttaTCATTTTCAGAAACGCT
TACCACGGAGCCAGTCCCACCACTCTTGGCATCACCAACATGGGTCAATA
CAAATTCCCAACTCCACAAAACTTTGGTTGTCACACTGTAAGAATCGGCA
ATGATCATTTTTTCGCCATCCGAatgctctctctctctctttgcAGTCTG
TTGAAAATTTTCGCATGCATGCTCCTAACCTCCTAACCTCATCAAAATTA
TACCTCTGAATCTAAATAGACCAACATaatatatttcccttttttcattt
cagattcCAAACCCAGATGTTTACAAAGGAATTTGGGGCGGAAAGAATTG
CCGCGATTCTCCCGTTCAAGTatgaattttaacaaaattaactttaaaat
ttAACTAAATTTTACTGCTACATAGATTCGTTCAAGAAATAACTTTCAAT
ATGCAACAATAAATTTAgactagccataattttcattaaagtgccaccgc
agaataacgatcaaataagttgttgaatttggaaagaaatgttactgata
gccgatagtctacaaatattagcaatttgtgtccatctcatagatatctt
cttatagagataagataaagttatttatctgttttttttgtcatctcNAC
GATGTGTAGATCTTTATAGAAAAGTTCTTTCAGCTTTGATAAGGTTATGT
AACTTACCGTGAAATCCACCATTATTGAATTTCTCCCAATCAAAAGTTTT
TCTACCGGTATATGTGCTNCAATGGCTTGTTTATGtcatactaaacgcta
ctgtGCTAAACTGCCATTTTACTGTAATAGTCAAACGACAAGTCTTAgaa
aggataaaaatttctaatttccgttgctcagagcggttaataactagttg
tggtttaaatagggaatttcccaacaaaaaaggaatttcccttaattcga
ctccctgaggtaataaaaaaagacatatagaggtttgaaaatgggtaatc
aaattaaaaaaaatccggaaaagtgtttttaatgatgataaaacaataga
aatacagtcaagctaagaatgttaccggtacaccatttaaccggaactaa
aatactgaNCTCTCTTTGCAGTCTGTTGAAAAAACCTCCTAACCTCATCA
AAATTATACCTCTGAATCTAAATAGACCAACATaatatatttcccttttt
tcatttcagattcCAAACCCAGATGTTTACAAAGGAATTTGGGGCGGAAA
GAATTGCCGCGATTCTCCCGTTCAAGTatgaattttaacaaaattaactt
taaaatttAACTAAATTTTACTGCTACATAGATTCGTTCAAGAAATAACT
TTCAATATGCAACAATAGATTTAGATTAGATTGCCCACCAATGTGGTTCA
TAATAATCTCTATTATTATAATCTACTATTTTTTAGGCTGACAGAGATTG
TGATTGTGCTGAAGGTATTTAATTCTTTTTCTAAACGAGTTCAGAATATT
TTGCCATTTCGAGGGTATTTTAgcgttttgcagaatttaaaaTTCAGGCG
AGAATGACATTTCTAGGCTTTCTACTTTACCTAATgggatatttcgattt
gggaggagTATAATGGCTTCCagactatattctcagcctaggGGGACCAT
AAAtaagcttttggatcctcagaccAGAGTCTTAAGTCTCCTGtttaaac
tcagagttaaaactgtACTTTCCAACCCTAAGTTAAGGCACTTAAAACTA
CTtgccctttttttaattttgcaagGAAATTCTTTTTGTGCAAAATGTTA
TAGGCCATAGATAGTTTTGTGTACATAGAAAAATTAGTGAAATGGGAATA
TTAAAGAACATAGGATCCCAAAGTAGTCAAACTACTGGCCAAAATTCCTC
TACTTTTATCTTTGTCTTTCAGGAGTATGTGAGGCCACAGACCTTTACCT
CGGTCAATTGGAAGATGTGTTGACCAATGTCACACCTCCAAAAGTTGCCG
GATTCTTTGGTGAACCCATCCAGGTcagatttttgttttaaatttgataa
CTTAACTTGCCTTTTCAgattaaaactttcttttctccataacttttttt
ttgctgagtaTGAACTGTTTATTTAAAAACACAGCTTCATTAGCTAAGCC
ATGTATcattgatccagtaaaaaatctgtttttccagaatgaaacaatga
aaatatagtTTACCAATGGGGAATTAGTTTCAGGATCTTTTAAGCGACTA
TTACCGTTGGGGTCTTTATTGCACAGGAATCTTTATAACAAGTTAGCTAC
TTATACTAAATTGGCGTTTTTCTGATCATATCATGTAGGGTGTCGGTGGT
AGCGTTCAATACCCACGTGACTTTTTACAAAAGACCTACGAGAAGATTCA
CGCACGTGGTGGACTTTGTGTGGCTGATGAGGTAgccatttttttatttc
caaatttGTTTACACATTCATTGTATAGTTCTTTATTCACCATTTCCCAT
GCTTTCGTGTAAACATTTCAAAGTCAATTATTCTGTCATTCACCAAAATC
CATCCGGATTCATATCTTATAGTTTcatcagaaaattattttgcacAGAA
GTAATCTATTATAATATCTATAGAATTTAGTAAATGTTATTTGTTCTCCT
TCAAAAAGGTTCAAACAGGTTTCGGACGTACTGGTTCACATTATTGGGGA
TTCCAAGGTTCTGGACTCAACCCTGACATCAGTAAGTGATTCGCTCTCCT
GGTTTCTTTCTAATTCTTGAAACGGAAATTTACAATTAATATCATAACAT
TTCCTGATAAATTCAGTCAGGCTAAcaataaaagataaaagattTAGGCT
TTAACGGGTGGTCAGATCTGAGATTTAGTGTGAATTAATAAACCAGATAC
TCTGGACGGGTTTCATAGAGTTTTTTCGATAAAGTGAAGTATTATATTTA
CTTACTTGTTGTTCACAGTCGTGTGCGCCAAGACCATCGCTAACGGATTA
CCAATGGCTTGCGTTAtcacaacaaaagaaattgcTGACTCAATGAACGT
TGCTCTTCCATTCAACACCTACTCCTCAAATCCAGTCTCTTGCGCCGCTG
CTATCACCGCTCTCGATGTAAGCTCTCTCTCATGGAATCATTCAATTAAG
GTTACATACCAGGTTGATTTCATGGATTATGTTAACAGTTTTTCTCTGAC
CGCAATACTTGTTCGTCTGATGATTTCCAATTACTTTAAACTCACGAGTG
AACTTTTTTTCTGAcgccaaaacttttttttagaaTTAATACTCGATTAA
AAGCAATTACCTGATTTGATTAGATCCCTTGAATGGTCTTGAGTTCAGTT
ACAGTTGCACAAATAATGTGCTGAACCTTTCTACGGGATGTAAGACAGCA
TAAAAATTGGCACCTTTACCAGTTTCCCAATATTCCGTTTCTATTTTGTG
GCGATACGCCTTGTTAATAAAGGCAGTTTCATAACGACGTTGTTTTCATT
GTAGGTTATCGACGAAGAAGGTTTACAAGAGAACTGTCAACGTGTTGGAA
CATATTGTTTGGAAGAACTATCGAAGATCCGTGATGATTACGAGATTGTC
GGGGATGTCCGTGGTAAAGGATTGATGATCGGTATCGAAATGGTCGCCGA
TAAAAAGGTATGCGTAAAGTTTGGTATGTCAGTTCAGTCGATATTATCCT
CCTTGTCTCCTTGTGTATTCAAATCTCAATCCTCTGTAAGGTCTATACCG
ACTTAATAGTTGCTTACGGATTACTATCAAAAGTATGTTAAATTTCTACA
ATAAAGGTTACCAATAATTTCACAATTATACCCTTTTCGAAGATAATGAG
GTTCATTCTTTATTCACTTTCCAGACGAGAGCACCATTGCAACCAGAGAG
AGTTGGAGATATCATCGAACGAACGAAAGATTACGGAGTCTTGTTTGGTA
AAGGTGGACGATTTGGACAGGTAGATTTTCTTCTCATCATGCTTTGATCT
TTGTTGACCACCTCCTAGTCAAAcaaacatttttcattttgatgtgTCTG
GTTTAAGGTCTTGTTTACCAATAGATCATCCACGTCGCAAATTAAGGATG
TAGCTCATGCACACTCCGTCGACTTAGTTATTGTACGTGATTAAAAATTA
GCAGCAACTTTGGTTCAGTGCGTTATAGTTGCACCAAAAGTTTCAGAACT
TTTATGTCTCATGGTCTAATAAAAACTGGAGCAAGAATTCATGTTTCTTC
GAATGTCAAAGAGAGTCGAAATTTAAGAAGTATGACTGTTTCTTCACTAG
TTTGAATTACCTTATTAACTCGAAACTGGAATTATAGCGTCCACTGTGTC
TTGTAGAAATTAGTTGATTGCCCTAAATGACCAGAGTTGCAATCAAATTA
TGTTTTCCATTCAGGTTCTTCGTATCAAACCACCAATGAACGTCACTAAA
GAAGACATTGATTTCGGACTTGCTGTTCTCAGACAATCTATCGAAGAACA
TCTCGCTCAATAGAAGGCGATGTTGTGAAACATACCAACGTTGAACATAC
AATATCAATGCAGGGTTCACAAGAAGACGAGACTATTGTGTATTCTGGTT
AGATATACATCGTCCCAGTAATTTTCGATGGAGCCTTGTCCTTATTGAAG
AGCGTCATTGAAAATTCATGGACCGTACTGCTGTTCCACAggcaaaaaat
aaacaaagggAAGCATTATTCAGCACAGTTAAgtttataattttaaatca
cCACGCCATTCCAAAAAtgctcatttaaaaaaataatttgatattCACAC
CTTACGTCATTAATGAGTTTTAGCAAAGATTGACAAAAGGGGTTCTCTAA
GATGTCTATAGAATTAATTCTTCCCNCGAGGTTCACTCTTTATTCCTTTT
CCAGACGAGAGCACCATTGCAACCAGAGAGAGTTGGAGATATCATCGAAC
GAACGAAAGATTACGGAGTCTTGTTCGGTAAAGGTGGACGATTTGGACAG
GTAGATTTTCTTCTCAGCATGCTATGATCTTAGTTGACCACCTCCTAGTC
AAACAAACAGTTTTCATTTTGATGTGTCTGGTTTAAGGTCTAGTTTACCT
ATAGATCATCCACGTCGCAAATTAAGGATGTAGCTCATGCACACTCCGTC
GACTTAGTTATTGTACGTGATTAAAAATTAGCAGTAAGTTTGGTTCAGTG
CGTTATAGTTGCACCAAAAGTTTCAGAACTTTTATGTCTCATGGTCTAAT
AAAAACTTGAGCGAGAATTCATATTTCTTCAAATGTCAAAGAGAGTCGAA
ATTTAAGAAGTATGACTGTTTCTTCACTAGTTTGAATTACCTTATTAACT
CGAAACTGGAATTATAGCGTCCACTGTGTCTTGTAGAAATTAGTTGATTG
CCCTAAATGACCAGAGTTGCAATCAAATTATGTTTTCCATTCAGGTTCTT
CGTATCAAACCACCAATGAACGTCACTAAAGAAGACATTGATTTCGGACT
TGCTGTTCTCAGACAATCTATCGAAGAACATCTCGCTCAATAGAAGGCGA
TGTTGTGAAACATACCAACGTTGAACATACAATATCAATGCAGGGTTCAC
AAGAAGACGAGACTATTGTGTATTCTGGTTAGATATACATCGTCCCAGTA
ATTTTCGATGGAGCCTTGTCCTTATTGAAGAGCGTCATTGAAAATTCATG
GACCGTACTGCTGTTCCACAGTggcaaaaaataaacaaagggAAGCATTA
TTCAGCACAGTTAAgtttataattttaaatcacCACGCCATTCCAAAAAt
actcatttaaaaaaatatacgcTCAAGGAACTAATTTGATATTCACACCT
TACGTCATTAATGAGTTTTAGCAAAGATTGACAAAAGGGGTTCTCTAAGA
TGTCTATAGAATTAATTCTTCCCTCGCTATTTCTTCACTTGAGAATAAAT
TTCACATAAGGgtaattttcatcaattttctaTATAATGCCGAAATAGGA
GAtctaattatttcaaaatatacaaagatttatataattaattttataat
ttttgtcgTTGTAAATATAATGAATACTCATTGACACAAAGTTCAAAACg
aattgtttttcttctttggtTTTCCTGAATGGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006972XLOC_006972Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012416-exon-sc0000144-1491911889:295684..295829TCONS_00012416-exon-sc0000144-1491911889:295684..295829Clytia hemisphaericaexon
TCONS_00012416-exon-sc0000144-1510915933:295684..295829TCONS_00012416-exon-sc0000144-1510915933:295684..295829Clytia hemisphaericaexon
TCONS_00012416-exon-sc0000144-1575043694:295684..295829TCONS_00012416-exon-sc0000144-1575043694:295684..295829Clytia hemisphaericaexon
TCONS_00012416-exon-sc0000144-1491911889:296006..296119TCONS_00012416-exon-sc0000144-1491911889:296006..296119Clytia hemisphaericaexon
TCONS_00012416-exon-sc0000144-1510915933:296006..296119TCONS_00012416-exon-sc0000144-1510915933:296006..296119Clytia hemisphaericaexon
TCONS_00012416-exon-sc0000144-1575043694:296006..296119TCONS_00012416-exon-sc0000144-1575043694:296006..296119Clytia hemisphaericaexon
TCONS_00012416-exon-sc0000144-1491911889:296309..296403TCONS_00012416-exon-sc0000144-1491911889:296309..296403Clytia hemisphaericaexon
TCONS_00012416-exon-sc0000144-1510915933:296309..296403TCONS_00012416-exon-sc0000144-1510915933:296309..296403Clytia hemisphaericaexon
TCONS_00012416-exon-sc0000144-1575043694:296309..296403TCONS_00012416-exon-sc0000144-1575043694:296309..296403Clytia hemisphaericaexon
TCONS_00012416-exon-sc0000144-1491911889:298061..298162TCONS_00012416-exon-sc0000144-1491911889:298061..298162Clytia hemisphaericaexon
TCONS_00012416-exon-sc0000144-1510915933:298061..298162TCONS_00012416-exon-sc0000144-1510915933:298061..298162Clytia hemisphaericaexon
TCONS_00012416-exon-sc0000144-1575043694:298061..298162TCONS_00012416-exon-sc0000144-1575043694:298061..298162Clytia hemisphaericaexon
TCONS_00012416-exon-sc0000144-1491911889:298750..298841TCONS_00012416-exon-sc0000144-1491911889:298750..298841Clytia hemisphaericaexon
TCONS_00012416-exon-sc0000144-1510915933:298750..298841TCONS_00012416-exon-sc0000144-1510915933:298750..298841Clytia hemisphaericaexon
TCONS_00012416-exon-sc0000144-1575043694:298750..298841TCONS_00012416-exon-sc0000144-1575043694:298750..298841Clytia hemisphaericaexon
TCONS_00012416-exon-sc0000144-1491911889:299187..299310TCONS_00012416-exon-sc0000144-1491911889:299187..299310Clytia hemisphaericaexon
TCONS_00012416-exon-sc0000144-1510915933:299187..299310TCONS_00012416-exon-sc0000144-1510915933:299187..299310Clytia hemisphaericaexon
TCONS_00012416-exon-sc0000144-1575043694:299187..299310TCONS_00012416-exon-sc0000144-1575043694:299187..299310Clytia hemisphaericaexon
TCONS_00012416-exon-sc0000144-1491911889:299589..299683TCONS_00012416-exon-sc0000144-1491911889:299589..299683Clytia hemisphaericaexon
TCONS_00012416-exon-sc0000144-1510915933:299589..299683TCONS_00012416-exon-sc0000144-1510915933:299589..299683Clytia hemisphaericaexon
TCONS_00012416-exon-sc0000144-1575043694:299589..299683TCONS_00012416-exon-sc0000144-1575043694:299589..299683Clytia hemisphaericaexon
TCONS_00012416-exon-sc0000144-1491911889:300027..300120TCONS_00012416-exon-sc0000144-1491911889:300027..300120Clytia hemisphaericaexon
TCONS_00012416-exon-sc0000144-1510915933:300027..300120TCONS_00012416-exon-sc0000144-1510915933:300027..300120Clytia hemisphaericaexon
TCONS_00012416-exon-sc0000144-1575043694:300027..300120TCONS_00012416-exon-sc0000144-1575043694:300027..300120Clytia hemisphaericaexon
TCONS_00012416-exon-sc0000144-1491911889:301193..301258TCONS_00012416-exon-sc0000144-1491911889:301193..301258Clytia hemisphaericaexon
TCONS_00012416-exon-sc0000144-1510915933:301193..301258TCONS_00012416-exon-sc0000144-1510915933:301193..301258Clytia hemisphaericaexon
TCONS_00012416-exon-sc0000144-1575043694:301193..301258TCONS_00012416-exon-sc0000144-1575043694:301193..301258Clytia hemisphaericaexon
TCONS_00012416-exon-sc0000144-1491911889:301420..301447TCONS_00012416-exon-sc0000144-1491911889:301420..301447Clytia hemisphaericaexon
TCONS_00012416-exon-sc0000144-1510915933:301420..301447TCONS_00012416-exon-sc0000144-1510915933:301420..301447Clytia hemisphaericaexon
TCONS_00012416-exon-sc0000144-1575043694:301420..301447TCONS_00012416-exon-sc0000144-1575043694:301420..301447Clytia hemisphaericaexon
TCONS_00012416-exon-sc0000144-1491911889:301906..302006TCONS_00012416-exon-sc0000144-1491911889:301906..302006Clytia hemisphaericaexon
TCONS_00012416-exon-sc0000144-1510915933:301906..302006TCONS_00012416-exon-sc0000144-1510915933:301906..302006Clytia hemisphaericaexon
TCONS_00012416-exon-sc0000144-1575043694:301906..302006TCONS_00012416-exon-sc0000144-1575043694:301906..302006Clytia hemisphaericaexon
TCONS_00012416-exon-sc0000144-1491911889:302322..302414TCONS_00012416-exon-sc0000144-1491911889:302322..302414Clytia hemisphaericaexon
TCONS_00012416-exon-sc0000144-1510915933:302322..302414TCONS_00012416-exon-sc0000144-1510915933:302322..302414Clytia hemisphaericaexon
TCONS_00012416-exon-sc0000144-1575043694:302322..302414TCONS_00012416-exon-sc0000144-1575043694:302322..302414Clytia hemisphaericaexon
TCONS_00012416-exon-sc0000144-1491911889:302642..302714TCONS_00012416-exon-sc0000144-1491911889:302642..302714Clytia hemisphaericaexon
TCONS_00012416-exon-sc0000144-1510915933:302642..302714TCONS_00012416-exon-sc0000144-1510915933:302642..302714Clytia hemisphaericaexon
TCONS_00012416-exon-sc0000144-1575043694:302642..302714TCONS_00012416-exon-sc0000144-1575043694:302642..302714Clytia hemisphaericaexon
TCONS_00012416-exon-sc0000144-1491911889:302952..303100TCONS_00012416-exon-sc0000144-1491911889:302952..303100Clytia hemisphaericaexon
TCONS_00012416-exon-sc0000144-1510915933:302952..303100TCONS_00012416-exon-sc0000144-1510915933:302952..303100Clytia hemisphaericaexon
TCONS_00012416-exon-sc0000144-1575043694:302952..303100TCONS_00012416-exon-sc0000144-1575043694:302952..303100Clytia hemisphaericaexon
TCONS_00012416-exon-sc0000144-1491911889:303488..303640TCONS_00012416-exon-sc0000144-1491911889:303488..303640Clytia hemisphaericaexon
TCONS_00012416-exon-sc0000144-1510915933:303488..303640TCONS_00012416-exon-sc0000144-1510915933:303488..303640Clytia hemisphaericaexon
TCONS_00012416-exon-sc0000144-1575043694:303488..303640TCONS_00012416-exon-sc0000144-1575043694:303488..303640Clytia hemisphaericaexon
TCONS_00012416-exon-sc0000144-1491911889:304888..304983TCONS_00012416-exon-sc0000144-1491911889:304888..304983Clytia hemisphaericaexon
TCONS_00012416-exon-sc0000144-1510915933:304888..304983TCONS_00012416-exon-sc0000144-1510915933:304888..304983Clytia hemisphaericaexon
TCONS_00012416-exon-sc0000144-1575043694:304888..304983TCONS_00012416-exon-sc0000144-1575043694:304888..304983Clytia hemisphaericaexon
TCONS_00012416-exon-sc0000144-1491911889:305428..306117TCONS_00012416-exon-sc0000144-1491911889:305428..306117Clytia hemisphaericaexon
TCONS_00012416-exon-sc0000144-1510915933:305428..306117TCONS_00012416-exon-sc0000144-1510915933:305428..306117Clytia hemisphaericaexon
TCONS_00012416-exon-sc0000144-1575043694:305428..306117TCONS_00012416-exon-sc0000144-1575043694:305428..306117Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000144supercontigsc0000144:295684..306117 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.216915	0.709468	0.926826	0.928892	147.864	103.983	148.518	148.69	71.2876	94.3264	83.1464	81.3667	155.42	150.088	122.379	158.945	138.515	106.573	115.567	102.139	144.22	154.323	84.561	90.3511	41.1043	25.7159	28.6238	42.3675	217.466	160.523
Blast
[Close]
BLAST of TCONS_00012416 vs. Swiss-Prot (Human)
Match: AGT2 (Alanine--glyoxylate aminotransferase 2, mitochondrial OS=Homo sapiens GN=AGXT2 PE=1 SV=1)

HSP 1 Score: 499.59 bits (1285), Expect = 2.475e-168
Identity = 237/467 (50.75%), Postives = 305/467 (65.31%), Query Frame = 2 
Query:  320 MPSTDFQPAEFKGMPYDEARAAHAKNLFPHVSERMLLYKRPVYLTQGHMQWLWDSEGKRYLDLFAGIATCGVGHCHPKITESIQDQASKLVHCSNLYINAKQAEYAEKLLTKLPEKYNRVYFVNSGSEANDFAMTMMRVYTGSWDIIGLRNAYHGASPTTLGITNMGQYKFPTPQNFGCHTIPNPDVYKGIWGGKNCRDSPVQADRDCDCAEGVCEATDLYLGQLEDVLTNVTPPKVAGFFGEPIQGVGGSVQYPRDFLQKTYEKIHARGGLCVADEVQTGFGRTGSHYWGFQGSGLNPDIIVCAKTIANGLPMACVITTKEIADSMNVALP-FNTYSSNPVSCAAAITALDVIDEEGLQENCQRVGTYCLEELSKIRDDYEIVGDVRGKGLMIGIEMVADKKTRAPLQPERVGDIIERTKDYGVLFGKGGRFGQVLRIKPPMNVTKEDIDFGLAVLRQSIEEHLAQ 1717
            MP  DF P  ++ + Y+     H ++L P V+     +++P+ L QGHM+WL+D+EG RYLD F+GI T  VGHCHPK+    Q Q  +L H S ++ +    EYAEKL   LPE    ++ VNSGSEAN+ AM M R ++ + DII  R AYHG SP TLG+TN+G YK   P   GC     PDV++G WGG +CRDSPVQ  R C CA   C+A D Y+ Q +D L+      +AGFF EPIQGV G VQYP+ FL++ +E + ARGG+C+ADEVQTGFGR GSH+WGFQ   + PDI+  AK I NG PMA VITT EIA S+   L  FNT+  NP++CA     L+VI EE LQEN Q VGTY L + +K+RD++EIVGDVRGKGLMIGIEMV DK +  PL  E V  I E  K  G+L G+G  F Q  RI P M +TK ++DF + V R ++ +H+ +
Sbjct:   48 MPPCDFMPERYQSLGYNRVLEIHKEHLSPVVTA---YFQKPLLLHQGHMEWLFDAEGSRYLDFFSGIVTVSVGHCHPKVNAVAQKQLGRLWHTSTVFFHPPMHEYAEKLAALLPEPLKVIFLVNSGSEANELAMLMARAHSNNIDIISFRGAYHGCSPYTLGLTNVGTYKMELPGGTGCQPTMCPDVFRGPWGGSHCRDSPVQTIRKCSCAPDCCQAKDQYIEQFKDTLSTSVAKSIAGFFAEPIQGVNGVVQYPKGFLKEAFELVRARGGVCIADEVQTGFGRLGSHFWGFQTHDVLPDIVTMAKGIGNGFPMAAVITTPEIAKSLAKCLQHFNTFGGNPMACAIGSAVLEVIKEENLQENSQEVGTYMLLKFAKLRDEFEIVGDVRGKGLMIGIEMVQDKISCRPLPREEVNQIHEDCKHMGLLVGRGSIFSQTFRIAPSMCITKPEVDFAVEVFRSALTQHMER 511
The following BLAST results are available for this feature:
BLAST of TCONS_00012416 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
AGT22.475e-16850.75Alanine--glyoxylate aminotransferase 2, mitochondr... [more]
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